BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.068P15F020924.3.1
(625 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF390060.1|CF390060 RTDR2_12_A06.b1_A021 Loblolly pine r... 40 0.11
gb|CF477126.1|CF477126 RTWW3_5_G08.g1_A022 Well-watered lob... 40 0.11
gb|DR079462.1|DR079462 RTFEPL1_11_A03.g1_A029 Roots plus ad... 40 0.11
gb|DR094118.1|DR094118 STRR1_12_C07.g1_A033 Stem Response R... 40 0.11
>gb|CF390060.1|CF390060 RTDR2_12_A06.b1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_12_A06_A021 3', mRNA
sequence
Length = 668
Score = 40.1 bits (20), Expect = 0.11
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 352 ttcttcctgctagcgctgtgtgggataactgcgaaccagggcttctacctcctggg 407
||||||||||| || | |||||||||||||| || || || |||||||| |||||
Sbjct: 478 ttcttcctgcttgcattatgtgggataactgcaaatcaaggattctacctgctggg 423
>gb|CF477126.1|CF477126 RTWW3_5_G08.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_5_G08_A022 5', mRNA sequence
Length = 735
Score = 40.1 bits (20), Expect = 0.11
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 352 ttcttcctgctagcgctgtgtgggataactgcgaaccagggcttctacctcctggg 407
||||||||||| || | |||||||||||||| || || || |||||||| |||||
Sbjct: 337 ttcttcctgcttgcattatgtgggataactgcaaatcaaggattctacctgctggg 392
>gb|DR079462.1|DR079462 RTFEPL1_11_A03.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_11_A03_A029 5', mRNA sequence
Length = 843
Score = 40.1 bits (20), Expect = 0.11
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 352 ttcttcctgctagcgctgtgtgggataactgcgaaccagggcttctacctcctggg 407
||||||||||| || | |||||||||||||| || || || |||||||| |||||
Sbjct: 315 ttcttcctgcttgcattatgtgggataactgcaaatcaaggattctacctgctggg 370
>gb|DR094118.1|DR094118 STRR1_12_C07.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_12_C07_A033 5', mRNA sequence
Length = 838
Score = 40.1 bits (20), Expect = 0.11
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 352 ttcttcctgctagcgctgtgtgggataactgcgaaccagggcttctacctcctggg 407
||||||||||| || | |||||||||||||| || || || |||||||| |||||
Sbjct: 336 ttcttcctgcttgcattatgtgggataactgcaaatcaaggattctacctgctggg 391
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 57,637
Number of Sequences: 355925
Number of extensions: 57637
Number of successful extensions: 17745
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17741
Number of HSP's gapped (non-prelim): 4
length of query: 625
length of database: 217,277,237
effective HSP length: 19
effective length of query: 606
effective length of database: 210,514,662
effective search space: 127571885172
effective search space used: 127571885172
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)