BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QBTB.006B01F020311.3.1
         (609 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BX253468.1|BX253468  BX253468 Pinus pinaster differenciat...    38   0.41 
gb|BG317675.1|BG317675  NXPV_004_E02_F NXPV (Nsf Xylem Plani...    38   0.41 
gb|BQ697132.1|BQ697132  NXPV_049_G09_F NXPV (Nsf Xylem Plani...    38   0.41 
gb|BQ697518.1|BQ697518  NXPV_054_D09_F NXPV (Nsf Xylem Plani...    38   0.41 
gb|BQ698458.1|BQ698458  NXPV_070_B08_F NXPV (Nsf Xylem Plani...    38   0.41 
gb|DR682666.1|DR682666  EST1072741 Normalized pine embryo li...    38   0.41 
gb|DR682667.1|DR682667  EST1072742 Normalized pine embryo li...    38   0.41 
gb|DT631281.1|DT631281  EST1146212 Normalized pine embryo li...    38   0.41 

>gb|BX253468.1|BX253468 BX253468 Pinus pinaster differenciating xylem adult Pinus pinaster
           cDNA clone PP083H03, mRNA sequence
          Length = 566

 Score = 38.2 bits (19), Expect = 0.41
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 67  ctcctgctcctacttctct 85
           |||||||||||||||||||
Sbjct: 294 ctcctgctcctacttctct 312



>gb|BG317675.1|BG317675 NXPV_004_E02_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
           cDNA clone NXPV_004_E02 5', mRNA sequence
          Length = 368

 Score = 38.2 bits (19), Expect = 0.41
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 67  ctcctgctcctacttctct 85
           |||||||||||||||||||
Sbjct: 270 ctcctgctcctacttctct 288



>gb|BQ697132.1|BQ697132 NXPV_049_G09_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
           cDNA clone NXPV_049_G09 5' similar to Arabidopsis
           thaliana sequence At5g19940 unknown protein see
           http://mips.gsf.de/proj/thal/db/index.html, mRNA
           sequence
          Length = 589

 Score = 38.2 bits (19), Expect = 0.41
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 67  ctcctgctcctacttctct 85
           |||||||||||||||||||
Sbjct: 270 ctcctgctcctacttctct 288



>gb|BQ697518.1|BQ697518 NXPV_054_D09_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
           cDNA clone NXPV_054_D09 5' similar to Arabidopsis
           thaliana sequence At5g19940 unknown protein see
           http://mips.gsf.de/proj/thal/db/index.html, mRNA
           sequence
          Length = 570

 Score = 38.2 bits (19), Expect = 0.41
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 67  ctcctgctcctacttctct 85
           |||||||||||||||||||
Sbjct: 271 ctcctgctcctacttctct 289



>gb|BQ698458.1|BQ698458 NXPV_070_B08_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
           cDNA clone NXPV_070_B08 5', mRNA sequence
          Length = 326

 Score = 38.2 bits (19), Expect = 0.41
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 67  ctcctgctcctacttctct 85
           |||||||||||||||||||
Sbjct: 176 ctcctgctcctacttctct 194



>gb|DR682666.1|DR682666 EST1072741 Normalized pine embryo library, Lib_D Pinus taeda cDNA
           clone PWAAB39, mRNA sequence
          Length = 868

 Score = 38.2 bits (19), Expect = 0.41
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 67  ctcctgctcctacttctct 85
           |||||||||||||||||||
Sbjct: 774 ctcctgctcctacttctct 756



>gb|DR682667.1|DR682667 EST1072742 Normalized pine embryo library, Lib_D Pinus taeda cDNA
           clone PWAAB39 3' end, mRNA sequence
          Length = 766

 Score = 38.2 bits (19), Expect = 0.41
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 67  ctcctgctcctacttctct 85
           |||||||||||||||||||
Sbjct: 257 ctcctgctcctacttctct 275



>gb|DT631281.1|DT631281 EST1146212 Normalized pine embryo library, Lib_D Pinus taeda cDNA
           clone PIMF704 3' end, mRNA sequence
          Length = 774

 Score = 38.2 bits (19), Expect = 0.41
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 67  ctcctgctcctacttctct 85
           |||||||||||||||||||
Sbjct: 265 ctcctgctcctacttctct 283



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 68,970
Number of Sequences: 355925
Number of extensions: 68970
Number of successful extensions: 18872
Number of sequences better than  0.5: 8
Number of HSP's better than  0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18864
Number of HSP's gapped (non-prelim): 8
length of query: 609
length of database: 217,277,237
effective HSP length: 19
effective length of query: 590
effective length of database: 210,514,662
effective search space: 124203650580
effective search space used: 124203650580
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)