BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBL6b07.xg.2.1
(644 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF390874.1|CF390874 RTDR3_2_E04.b1_A022 Loblolly pine ro... 60 1e-007
gb|BX679804.1|BX679804 BX679804 RS Pinus pinaster cDNA clon... 50 1e-004
gb|DR017144.1|DR017144 STRS1_14_G08.b1_A034 Shoot tip pitch... 50 1e-004
gb|BM157626.1|BM157626 NXLV_023_D12_F NXLV (Nsf Xylem Late ... 46 0.002
gb|CF390303.1|CF390303 RTDR2_18_A12.g1_A021 Loblolly pine r... 46 0.002
gb|CO368429.1|CO368429 RTK1_40_C12.g1_A029 Roots minus pota... 46 0.002
gb|CO200166.1|CO200166 GEO2_5_G03.g1_A032 Root gravitropism... 42 0.027
gb|DN459176.1|DN459176 EST954975 Sequencing ESTs from loblo... 40 0.11
gb|DR021163.1|DR021163 STRS1_42_F06.g1_A034 Shoot tip pitch... 40 0.11
gb|DR091249.1|DR091249 RTAL1_20_G10.b1_A029 Roots plus adde... 40 0.11
gb|DR119018.1|DR119018 RTMG1_20_D06.g1_A029 Roots minus mag... 40 0.11
gb|DR683837.1|DR683837 EST1073913 Normalized pine embryo li... 40 0.11
gb|DT626839.1|DT626839 EST1159915 Sequencing ESTs from lobl... 40 0.11
dbj|BD267187.1| Compositions isolated from plant cells and ... 40 0.11
gb|CF394146.1|CF394146 RTDS2_3_G11.g1_A021 Drought-stressed... 38 0.43
gb|CX649202.1|CX649202 COLD1_33_D05.g1_A029 Root cold Pinus... 38 0.43
gb|CX712969.1|CX712969 RTPQ1_6_C12.b1_A032 Roots treated wi... 38 0.43
gb|CX713038.1|CX713038 RTPQ1_6_C12.g1_A032 Roots treated wi... 38 0.43
gb|DR058480.1|DR058480 RTNIT1_12_B12.b1_A029 Roots minus ni... 38 0.43
gb|DR058555.1|DR058555 RTNIT1_12_B12.g1_A029 Roots minus ni... 38 0.43
gb|DR078276.1|DR078276 RTFEPL1_3_C02.b1_A029 Roots plus add... 38 0.43
gb|DR165911.1|DR165911 RTPHOS1_8_C11.b1_A029 Roots minus ph... 38 0.43
dbj|BD267346.1| Compositions isolated from plant cells and ... 38 0.43
>gb|CF390874.1|CF390874 RTDR3_2_E04.b1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_2_E04_A022 3', mRNA
sequence
Length = 598
Score = 60.0 bits (30), Expect = 1e-007
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 209 ccacagggcacgccgggctacgtcgacccggtgtaccaccagtgct 254
|||||||||||||| |||||||| ||||||| |||||||||||||
Sbjct: 81 ccacagggcacgcccggctacgttgacccggaataccaccagtgct 126
>gb|BX679804.1|BX679804 BX679804 RS Pinus pinaster cDNA clone RS34B09, mRNA sequence
Length = 544
Score = 50.1 bits (25), Expect = 1e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 269 aagagcgacgtgtacagcttcggcgtcgt 297
||||| |||||||||||||||||||||||
Sbjct: 99 aagagtgacgtgtacagcttcggcgtcgt 127
>gb|DR017144.1|DR017144 STRS1_14_G08.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_14_G08_A034 3', mRNA sequence
Length = 781
Score = 50.1 bits (25), Expect = 1e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 269 aagagcgacgtgtacagcttcggcgtcgt 297
||||| |||||||||||||||||||||||
Sbjct: 205 aagagtgacgtgtacagcttcggcgtcgt 233
>gb|BM157626.1|BM157626 NXLV_023_D12_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_023_D12 5' similar to Arabidopsis thaliana
sequence At5g65700 receptor protein kinase-like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 499
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 265 cgagaagagcgacgtgtacagcttcgg 291
||||||||||||||| |||||||||||
Sbjct: 205 cgagaagagcgacgtatacagcttcgg 231
>gb|CF390303.1|CF390303 RTDR2_18_A12.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_18_A12_A021 5', mRNA
sequence
Length = 748
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 265 cgagaagagcgacgtgtacagcttcgg 291
||||||||||||||| |||||||||||
Sbjct: 521 cgagaagagcgacgtatacagcttcgg 547
>gb|CO368429.1|CO368429 RTK1_40_C12.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_40_C12_A029 5', mRNA sequence
Length = 648
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 265 cgagaagagcgacgtgtacagcttcgg 291
||||||||||||||| |||||||||||
Sbjct: 64 cgagaagagcgacgtatacagcttcgg 90
>gb|CO200166.1|CO200166 GEO2_5_G03.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_5_G03_A032 5', mRNA sequence
Length = 793
Score = 42.1 bits (21), Expect = 0.027
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 141 acgtgaaggtcgccgactttgggct 165
||||||||||| |||||||||||||
Sbjct: 397 acgtgaaggtctccgactttgggct 421
>gb|DN459176.1|DN459176 EST954975 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIHK22 5' end, mRNA sequence
Length = 907
Score = 40.1 bits (20), Expect = 0.11
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 269 aagagcgacgtgtacagcttcggcgtcgtgctggtcgagctcgt 312
||||||||||| |||||||| ||| ||||| || | ||||||||
Sbjct: 301 aagagcgacgtttacagcttgggcatcgtgttgctggagctcgt 344
>gb|DR021163.1|DR021163 STRS1_42_F06.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_42_F06_A034 5', mRNA sequence
Length = 532
Score = 40.1 bits (20), Expect = 0.11
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 258 agctgaccgagaagagcgacgtgtacag 285
|||||||| ||||||||||||| |||||
Sbjct: 75 agctgacccagaagagcgacgtatacag 102
>gb|DR091249.1|DR091249 RTAL1_20_G10.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_20_G10_A029 3', mRNA sequence
Length = 647
Score = 40.1 bits (20), Expect = 0.11
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 258 agctgaccgagaagagcgacgtgtacag 285
|||||||| ||||||||||||| |||||
Sbjct: 328 agctgacccagaagagcgacgtatacag 301
>gb|DR119018.1|DR119018 RTMG1_20_D06.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_20_D06_A029 5', mRNA sequence
Length = 515
Score = 40.1 bits (20), Expect = 0.11
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 269 aagagcgacgtgtacagcttcggcgtcgtgctggtcgagctcgt 312
||||||||||| |||||||| ||| ||||| || | ||||||||
Sbjct: 28 aagagcgacgtttacagcttgggcatcgtgttgctggagctcgt 71
>gb|DR683837.1|DR683837 EST1073913 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAL83 3' end, mRNA sequence
Length = 797
Score = 40.1 bits (20), Expect = 0.11
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 269 aagagcgacgtgtacagcttcggcgtcgtgctggtcgagctcgt 312
||||||||||| |||||||| ||| ||||| || | ||||||||
Sbjct: 677 aagagcgacgtttacagcttgggcatcgtgttgctggagctcgt 720
>gb|DT626839.1|DT626839 EST1159915 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAR91 5' end, mRNA sequence
Length = 907
Score = 40.1 bits (20), Expect = 0.11
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 269 aagagcgacgtgtacagcttcggcgtcgtgctggtcgagctcgt 312
||||||||||| |||||||| ||| ||||| || | ||||||||
Sbjct: 301 aagagcgacgtttacagcttgggcatcgtgttgctggagctcgt 344
>dbj|BD267187.1| Compositions isolated from plant cells and utilization of the same
in modifying plant cell signal transduction
Length = 369
Score = 40.1 bits (20), Expect = 0.11
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 269 aagagcgacgtgtacagcttcggcgtcgtgctggtcgagctcgt 312
||||||||||| |||||||| ||| ||||| || | ||||||||
Sbjct: 15 aagagcgacgtttacagcttgggcatcgtgttgctggagctcgt 58
>gb|CF394146.1|CF394146 RTDS2_3_G11.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_3_G11_A021 5', mRNA sequence
Length = 853
Score = 38.2 bits (19), Expect = 0.43
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 261 tgaccgagaagagcgacgtgtacagcttcgg 291
||||||||||||| ||| | |||||||||||
Sbjct: 409 tgaccgagaagagtgacatctacagcttcgg 439
>gb|CX649202.1|CX649202 COLD1_33_D05.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_33_D05_A029 5', mRNA sequence
Length = 806
Score = 38.2 bits (19), Expect = 0.43
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 261 tgaccgagaagagcgacgtgtacagcttcgg 291
||||||||||||| ||| | |||||||||||
Sbjct: 307 tgaccgagaagagtgacatctacagcttcgg 337
>gb|CX712969.1|CX712969 RTPQ1_6_C12.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_6_C12_A032 3', mRNA sequence
Length = 871
Score = 38.2 bits (19), Expect = 0.43
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 261 tgaccgagaagagcgacgtgtacagcttcgg 291
||||||||||||| ||| | |||||||||||
Sbjct: 352 tgaccgagaagagtgacatctacagcttcgg 382
>gb|CX713038.1|CX713038 RTPQ1_6_C12.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_6_C12_A032 5', mRNA sequence
Length = 850
Score = 38.2 bits (19), Expect = 0.43
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 261 tgaccgagaagagcgacgtgtacagcttcgg 291
||||||||||||| ||| | |||||||||||
Sbjct: 490 tgaccgagaagagtgacatctacagcttcgg 520
>gb|DR058480.1|DR058480 RTNIT1_12_B12.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_12_B12_A029 3', mRNA sequence
Length = 733
Score = 38.2 bits (19), Expect = 0.43
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 261 tgaccgagaagagcgacgtgtacagcttcgg 291
||||||||||||| ||| | |||||||||||
Sbjct: 28 tgaccgagaagagtgacatctacagcttcgg 58
>gb|DR058555.1|DR058555 RTNIT1_12_B12.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_12_B12_A029 5', mRNA sequence
Length = 859
Score = 38.2 bits (19), Expect = 0.43
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 261 tgaccgagaagagcgacgtgtacagcttcgg 291
||||||||||||| ||| | |||||||||||
Sbjct: 503 tgaccgagaagagtgacatctacagcttcgg 533
>gb|DR078276.1|DR078276 RTFEPL1_3_C02.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_3_C02_A029 3', mRNA sequence
Length = 761
Score = 38.2 bits (19), Expect = 0.43
Identities = 73/91 (80%)
Strand = Plus / Plus
Query: 207 tcccacagggcacgccgggctacgtcgacccggtgtaccaccagtgctacaagctgaccg 266
||||||| |||||||| || || || ||||| | |||| | |||||||| ||||||| |
Sbjct: 193 tcccacaaggcacgccagggtatgttgacccagagtactatcagtgctatcagctgactg 252
Query: 267 agaagagcgacgtgtacagcttcggcgtcgt 297
|||| ||| || ||||||||||| |||||
Sbjct: 253 agaaatccgatgtatacagcttcggggtcgt 283
>gb|DR165911.1|DR165911 RTPHOS1_8_C11.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_8_C11_A029 3', mRNA sequence
Length = 682
Score = 38.2 bits (19), Expect = 0.43
Identities = 73/91 (80%)
Strand = Plus / Plus
Query: 207 tcccacagggcacgccgggctacgtcgacccggtgtaccaccagtgctacaagctgaccg 266
||||||| |||||||| || || || ||||| | |||| | |||||||| ||||||| |
Sbjct: 43 tcccacaaggcacgccagggtatgttgacccagagtactatcagtgctatcagctgactg 102
Query: 267 agaagagcgacgtgtacagcttcggcgtcgt 297
|||| ||| || ||||||||||| |||||
Sbjct: 103 agaaatccgatgtatacagcttcggggtcgt 133
>dbj|BD267346.1| Compositions isolated from plant cells and utilization of the same in
modifying plant cell signal transduction
Length = 3222
Score = 38.2 bits (19), Expect = 0.43
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 261 tgaccgagaagagcgacgtgtacagcttcgg 291
||||||||||||| ||| | |||||||||||
Sbjct: 2571 tgaccgagaagagtgacatctacagcttcgg 2601
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 43,081
Number of Sequences: 355925
Number of extensions: 43081
Number of successful extensions: 10222
Number of sequences better than 0.5: 23
Number of HSP's better than 0.5 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10195
Number of HSP's gapped (non-prelim): 27
length of query: 644
length of database: 217,277,237
effective HSP length: 19
effective length of query: 625
effective length of database: 210,514,662
effective search space: 131571663750
effective search space used: 131571663750
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)