BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBL3a04.xg.2.1
(369 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW981549.1|AW981549 PC13H09 Pine TriplEx pollen cone lib... 48 3e-004
gb|CF663414.1|CF663414 RTCNT1_2_E05.g1_A029 Root control Pi... 48 3e-004
gb|CO175343.1|CO175343 NDL1_54_D01.b1_A029 Needles control ... 48 3e-004
gb|CO175416.1|CO175416 NDL1_54_D01.g1_A029 Needles control ... 48 3e-004
gb|CO366765.1|CO366765 RTK1_29_H12.g1_A029 Roots minus pota... 48 3e-004
gb|CV031549.1|CV031549 RTNACL1_2_F07.b1_A029 Roots plus add... 48 3e-004
gb|CV031633.1|CV031633 RTNACL1_2_F07.g1_A029 Roots plus add... 48 3e-004
gb|CX647228.1|CX647228 COLD1_14_B03.g1_A029 Root cold Pinus... 48 3e-004
gb|DR092962.1|DR092962 STRR1_5_E03.b1_A033 Stem Response Re... 48 3e-004
gb|DR093044.1|DR093044 STRR1_5_E03.g1_A033 Stem Response Re... 48 3e-004
gb|DR118494.1|DR118494 RTMG1_17_H05.b1_A029 Roots minus mag... 48 3e-004
dbj|BD273071.1| Materials and methods for the modification ... 48 3e-004
>gb|AW981549.1|AW981549 PC13H09 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC13H09, mRNA sequence
Length = 594
Score = 48.1 bits (24), Expect = 3e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 29 gtgttcacgtactgtgattatatatacgggac 60
|||||||| |||||||||||| ||||||||||
Sbjct: 28 gtgttcacatactgtgattatttatacgggac 59
>gb|CF663414.1|CF663414 RTCNT1_2_E05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_2_E05_A029 5', mRNA sequence
Length = 790
Score = 48.1 bits (24), Expect = 3e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 29 gtgttcacgtactgtgattatatatacgggac 60
|||||||| |||||||||||| ||||||||||
Sbjct: 742 gtgttcacatactgtgattatttatacgggac 773
>gb|CO175343.1|CO175343 NDL1_54_D01.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_54_D01_A029 3', mRNA sequence
Length = 687
Score = 48.1 bits (24), Expect = 3e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 29 gtgttcacgtactgtgattatatatacgggac 60
|||||||| |||||||||||| ||||||||||
Sbjct: 256 gtgttcacatactgtgattatttatacgggac 287
>gb|CO175416.1|CO175416 NDL1_54_D01.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_54_D01_A029 5', mRNA sequence
Length = 709
Score = 48.1 bits (24), Expect = 3e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 29 gtgttcacgtactgtgattatatatacgggac 60
|||||||| |||||||||||| ||||||||||
Sbjct: 640 gtgttcacatactgtgattatttatacgggac 671
>gb|CO366765.1|CO366765 RTK1_29_H12.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_29_H12_A029 5', mRNA sequence
Length = 789
Score = 48.1 bits (24), Expect = 3e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 29 gtgttcacgtactgtgattatatatacgggac 60
|||||||| |||||||||||| ||||||||||
Sbjct: 536 gtgttcacatactgtgattatttatacgggac 505
>gb|CV031549.1|CV031549 RTNACL1_2_F07.b1_A029 Roots plus added NaCl Pinus taeda cDNA
clone RTNACL1_2_F07_A029 3', mRNA sequence
Length = 488
Score = 48.1 bits (24), Expect = 3e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 29 gtgttcacgtactgtgattatatatacgggac 60
|||||||| |||||||||||| ||||||||||
Sbjct: 57 gtgttcacatactgtgattatttatacgggac 88
>gb|CV031633.1|CV031633 RTNACL1_2_F07.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_2_F07_A029 5', mRNA sequence
Length = 788
Score = 48.1 bits (24), Expect = 3e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 29 gtgttcacgtactgtgattatatatacgggac 60
|||||||| |||||||||||| ||||||||||
Sbjct: 623 gtgttcacatactgtgattatttatacgggac 654
>gb|CX647228.1|CX647228 COLD1_14_B03.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_14_B03_A029 5', mRNA sequence
Length = 638
Score = 48.1 bits (24), Expect = 3e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 29 gtgttcacgtactgtgattatatatacgggac 60
|||||||| |||||||||||| ||||||||||
Sbjct: 400 gtgttcacatactgtgattatttatacgggac 369
>gb|DR092962.1|DR092962 STRR1_5_E03.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_5_E03_A033 3', mRNA sequence
Length = 823
Score = 48.1 bits (24), Expect = 3e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 29 gtgttcacgtactgtgattatatatacgggac 60
|||||||| |||||||||||| ||||||||||
Sbjct: 316 gtgttcacatactgtgattatttatacgggac 347
>gb|DR093044.1|DR093044 STRR1_5_E03.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_5_E03_A033 5', mRNA sequence
Length = 894
Score = 48.1 bits (24), Expect = 3e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 29 gtgttcacgtactgtgattatatatacgggac 60
|||||||| |||||||||||| ||||||||||
Sbjct: 797 gtgttcacatactgtgattatttatacgggac 828
>gb|DR118494.1|DR118494 RTMG1_17_H05.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_17_H05_A029 3', mRNA sequence
Length = 814
Score = 48.1 bits (24), Expect = 3e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 29 gtgttcacgtactgtgattatatatacgggac 60
|||||||| |||||||||||| ||||||||||
Sbjct: 339 gtgttcacatactgtgattatttatacgggac 370
>dbj|BD273071.1| Materials and methods for the modification of isoprenoid content,
compostition and metabolism
Length = 631
Score = 48.1 bits (24), Expect = 3e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 29 gtgttcacgtactgtgattatatatacgggac 60
|||||||| |||||||||||| ||||||||||
Sbjct: 481 gtgttcacatactgtgattatttatacgggac 512
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 33,765
Number of Sequences: 355925
Number of extensions: 33765
Number of successful extensions: 9743
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9731
Number of HSP's gapped (non-prelim): 12
length of query: 369
length of database: 217,277,237
effective HSP length: 18
effective length of query: 351
effective length of database: 210,870,587
effective search space: 74015576037
effective search space used: 74015576037
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)