BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBL17f07.xg.2.1
(657 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX254108.1|BX254108 BX254108 Pinus pinaster differenciat... 38 0.44
gb|CF393810.1|CF393810 RTDS2_1_H02.g1_A021 Drought-stressed... 38 0.44
gb|CX646788.1|CX646788 COLD1_11_C03.g1_A029 Root cold Pinus... 38 0.44
gb|DN448529.1|DN448529 EST944328 Sequencing ESTs from loblo... 38 0.44
gb|DR050909.1|DR050909 RTBOR1_26_A08.g1_A029 Roots plus add... 38 0.44
gb|DR116962.1|DR116962 RTMG1_3_G10.g1_A029 Roots minus magn... 38 0.44
gb|DR694401.1|DR694401 EST1084493 Normalized pine embryo li... 38 0.44
gb|DT624545.1|DT624545 EST1158724 Sequencing ESTs from lobl... 38 0.44
gb|AF367091.1| Pinus taeda microsatellite RPTest9 sequence,... 38 0.44
gb|AF367093.1| Pinus taeda microsatellite RPTest9 sequence,... 38 0.44
gb|AF367094.1| Pinus taeda microsatellite RPTest9 sequence,... 38 0.44
gb|AF367095.1| Pinus taeda microsatellite RPTest9 sequence,... 38 0.44
gb|AF367096.1| Pinus taeda microsatellite RPTest9 sequence,... 38 0.44
gb|AF367097.1| Pinus taeda microsatellite RPTest9 sequence,... 38 0.44
gb|AF367098.1| Pinus taeda microsatellite RPTest9 sequence,... 38 0.44
gb|AY489266.1| Pinus ponderosa microsatellite PtTX2146 sequ... 38 0.44
gb|AY489267.1| Pinus sylvestris microsatellite PtTX2146 seq... 38 0.44
>gb|BX254108.1|BX254108 BX254108 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP093E03, mRNA sequence
Length = 394
Score = 38.2 bits (19), Expect = 0.44
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 300 gctgctgctgctgctgaac 318
|||||||||||||||||||
Sbjct: 235 gctgctgctgctgctgaac 217
>gb|CF393810.1|CF393810 RTDS2_1_H02.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_1_H02_A021 5', mRNA sequence
Length = 780
Score = 38.2 bits (19), Expect = 0.44
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 300 gctgctgctgctgctgaac 318
|||||||||||||||||||
Sbjct: 207 gctgctgctgctgctgaac 189
>gb|CX646788.1|CX646788 COLD1_11_C03.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_11_C03_A029 5', mRNA sequence
Length = 915
Score = 38.2 bits (19), Expect = 0.44
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 300 gctgctgctgctgctgaac 318
|||||||||||||||||||
Sbjct: 621 gctgctgctgctgctgaac 603
>gb|DN448529.1|DN448529 EST944328 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIC591 5' end, mRNA sequence
Length = 859
Score = 38.2 bits (19), Expect = 0.44
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 300 gctgctgctgctgctgaac 318
|||||||||||||||||||
Sbjct: 381 gctgctgctgctgctgaac 363
>gb|DR050909.1|DR050909 RTBOR1_26_A08.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_26_A08_A029 5', mRNA sequence
Length = 824
Score = 38.2 bits (19), Expect = 0.44
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 300 gctgctgctgctgctgaac 318
|||||||||||||||||||
Sbjct: 174 gctgctgctgctgctgaac 156
>gb|DR116962.1|DR116962 RTMG1_3_G10.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_3_G10_A029 5', mRNA sequence
Length = 825
Score = 38.2 bits (19), Expect = 0.44
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 300 gctgctgctgctgctgaac 318
|||||||||||||||||||
Sbjct: 567 gctgctgctgctgctgaac 549
>gb|DR694401.1|DR694401 EST1084493 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEC02 3' end, mRNA sequence
Length = 762
Score = 38.2 bits (19), Expect = 0.44
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 300 gctgctgctgctgctgaac 318
|||||||||||||||||||
Sbjct: 19 gctgctgctgctgctgaac 1
>gb|DT624545.1|DT624545 EST1158724 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAE71 5' end, mRNA sequence
Length = 929
Score = 38.2 bits (19), Expect = 0.44
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 300 gctgctgctgctgctgaac 318
|||||||||||||||||||
Sbjct: 381 gctgctgctgctgctgaac 363
>gb|AF367091.1| Pinus taeda microsatellite RPTest9 sequence, allele 2
Length = 217
Score = 38.2 bits (19), Expect = 0.44
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 300 gctgctgctgctgctgaac 318
|||||||||||||||||||
Sbjct: 68 gctgctgctgctgctgaac 50
>gb|AF367093.1| Pinus taeda microsatellite RPTest9 sequence, allele 4
Length = 240
Score = 38.2 bits (19), Expect = 0.44
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 300 gctgctgctgctgctgaac 318
|||||||||||||||||||
Sbjct: 71 gctgctgctgctgctgaac 53
>gb|AF367094.1| Pinus taeda microsatellite RPTest9 sequence, allele 5
Length = 249
Score = 38.2 bits (19), Expect = 0.44
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 300 gctgctgctgctgctgaac 318
|||||||||||||||||||
Sbjct: 71 gctgctgctgctgctgaac 53
>gb|AF367095.1| Pinus taeda microsatellite RPTest9 sequence, allele 6
Length = 231
Score = 38.2 bits (19), Expect = 0.44
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 300 gctgctgctgctgctgaac 318
|||||||||||||||||||
Sbjct: 71 gctgctgctgctgctgaac 53
>gb|AF367096.1| Pinus taeda microsatellite RPTest9 sequence, allele 7
Length = 248
Score = 38.2 bits (19), Expect = 0.44
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 300 gctgctgctgctgctgaac 318
|||||||||||||||||||
Sbjct: 72 gctgctgctgctgctgaac 54
>gb|AF367097.1| Pinus taeda microsatellite RPTest9 sequence, allele 8
Length = 229
Score = 38.2 bits (19), Expect = 0.44
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 300 gctgctgctgctgctgaac 318
|||||||||||||||||||
Sbjct: 70 gctgctgctgctgctgaac 52
>gb|AF367098.1| Pinus taeda microsatellite RPTest9 sequence, allele 9
Length = 221
Score = 38.2 bits (19), Expect = 0.44
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 300 gctgctgctgctgctgaac 318
|||||||||||||||||||
Sbjct: 71 gctgctgctgctgctgaac 53
>gb|AY489266.1| Pinus ponderosa microsatellite PtTX2146 sequence
Length = 186
Score = 38.2 bits (19), Expect = 0.44
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 300 gctgctgctgctgctgaac 318
|||||||||||||||||||
Sbjct: 79 gctgctgctgctgctgaac 97
>gb|AY489267.1| Pinus sylvestris microsatellite PtTX2146 sequence
Length = 213
Score = 38.2 bits (19), Expect = 0.44
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 300 gctgctgctgctgctgaac 318
|||||||||||||||||||
Sbjct: 106 gctgctgctgctgctgaac 124
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 74,662
Number of Sequences: 355925
Number of extensions: 74662
Number of successful extensions: 24428
Number of sequences better than 0.5: 17
Number of HSP's better than 0.5 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24191
Number of HSP's gapped (non-prelim): 197
length of query: 657
length of database: 217,277,237
effective HSP length: 19
effective length of query: 638
effective length of database: 210,514,662
effective search space: 134308354356
effective search space used: 134308354356
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)