BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QBE1h10.xg.2.1
         (463 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DR177096.1|DR177096  RTMNUT1_3_C06.b1_A029 Roots minus mi...    44   0.005
gb|DR177171.1|DR177171  RTMNUT1_3_C06.g1_A029 Roots minus mi...    44   0.005
gb|BE761915.1|BE761915  NXCI_071_F01_F NXCI (Nsf Xylem Compr...    40   0.077
gb|DR025032.1|DR025032  STRS1_69_D12.b1_A034 Shoot tip pitch...    40   0.077
gb|DR689452.1|DR689452  EST1079538 Normalized pine embryo li...    40   0.077
gb|DT635466.1|DT635466  EST1150397 Normalized pine embryo li...    40   0.077

>gb|DR177096.1|DR177096 RTMNUT1_3_C06.b1_A029 Roots minus micronutrients Pinus taeda cDNA
           clone RTMNUT1_3_C06_A029 3', mRNA sequence
          Length = 753

 Score = 44.1 bits (22), Expect = 0.005
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 281 gacgctcacctctacgttttcaacaacggc 310
           ||||| || |||||||||||||||||||||
Sbjct: 336 gacgcccatctctacgttttcaacaacggc 365



>gb|DR177171.1|DR177171 RTMNUT1_3_C06.g1_A029 Roots minus micronutrients Pinus taeda cDNA
           clone RTMNUT1_3_C06_A029 5', mRNA sequence
          Length = 745

 Score = 44.1 bits (22), Expect = 0.005
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 281 gacgctcacctctacgttttcaacaacggc 310
           ||||| || |||||||||||||||||||||
Sbjct: 619 gacgcccatctctacgttttcaacaacggc 648



>gb|BE761915.1|BE761915 NXCI_071_F01_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
           taeda cDNA clone NXCI_071_F01 5', mRNA sequence
          Length = 336

 Score = 40.1 bits (20), Expect = 0.077
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 145 cttcgtcgacgccgacatct 164
           ||||||||||||||||||||
Sbjct: 186 cttcgtcgacgccgacatct 167



>gb|DR025032.1|DR025032 STRS1_69_D12.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
           cDNA clone STRS1_69_D12_A034 3', mRNA sequence
          Length = 846

 Score = 40.1 bits (20), Expect = 0.077
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 145 cttcgtcgacgccgacatct 164
           ||||||||||||||||||||
Sbjct: 745 cttcgtcgacgccgacatct 764



>gb|DR689452.1|DR689452 EST1079538 Normalized pine embryo library, Lib_D Pinus taeda cDNA
           clone PWACI83 3' end, mRNA sequence
          Length = 800

 Score = 40.1 bits (20), Expect = 0.077
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 145 cttcgtcgacgccgacatct 164
           ||||||||||||||||||||
Sbjct: 211 cttcgtcgacgccgacatct 192



>gb|DT635466.1|DT635466 EST1150397 Normalized pine embryo library, Lib_D Pinus taeda cDNA
           clone PIMGH17 3' end, mRNA sequence
          Length = 759

 Score = 40.1 bits (20), Expect = 0.077
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 145 cttcgtcgacgccgacatct 164
           ||||||||||||||||||||
Sbjct: 219 cttcgtcgacgccgacatct 200



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 38,598
Number of Sequences: 355925
Number of extensions: 38598
Number of successful extensions: 15802
Number of sequences better than  0.5: 6
Number of HSP's better than  0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15795
Number of HSP's gapped (non-prelim): 7
length of query: 463
length of database: 217,277,237
effective HSP length: 19
effective length of query: 444
effective length of database: 210,514,662
effective search space: 93468509928
effective search space used: 93468509928
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)