BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAZ3f05.yg.3.1
(1626 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF395073.1|CF395073 RTDS2_9_D11.g1_A021 Drought-stressed... 66 5e-009
gb|CO163177.1|CO163177 FLD1_40_A10.b1_A029 Root flooded Pin... 66 5e-009
gb|DR388955.1|DR388955 RTHG1_31_B08.g1_A029 Roots plus adde... 44 0.018
>gb|CF395073.1|CF395073 RTDS2_9_D11.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_9_D11_A021 5', mRNA sequence
Length = 729
Score = 65.9 bits (33), Expect = 5e-009
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 984 aatgttgcaatgcttacccttcaggagcttgaagatggaagtgttctccttcggtttgct 1043
||||||||||| | |||||||||||||| |||||||||||||| || |||| || |||
Sbjct: 336 aatgttgcaataatcacccttcaggagctcgaagatggaagtgtcctttttcgattggct 395
Query: 1044 catctatatgaggccgg 1060
|| || |||||||||||
Sbjct: 396 cacctttatgaggccgg 412
>gb|CO163177.1|CO163177 FLD1_40_A10.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_40_A10_A029 3', mRNA sequence
Length = 834
Score = 65.9 bits (33), Expect = 5e-009
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 984 aatgttgcaatgcttacccttcaggagcttgaagatggaagtgttctccttcggtttgct 1043
||||||||||| | |||||||||||||| |||||||||||||| || |||| || |||
Sbjct: 260 aatgttgcaataatcacccttcaggagctcgaagatggaagtgtcctttttcgattggct 319
Query: 1044 catctatatgaggccgg 1060
|| || |||||||||||
Sbjct: 320 cacctttatgaggccgg 336
>gb|DR388955.1|DR388955 RTHG1_31_B08.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_31_B08_A029 5', mRNA sequence
Length = 736
Score = 44.1 bits (22), Expect = 0.018
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 582 attgctggaaactattatcctgttaatcttggcatcta 619
||||||||||| ||||||||| | ||||| ||||||||
Sbjct: 146 attgctggaaattattatcctttgaatctaggcatcta 183
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 201,695
Number of Sequences: 355925
Number of extensions: 201695
Number of successful extensions: 53205
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53198
Number of HSP's gapped (non-prelim): 7
length of query: 1626
length of database: 217,277,237
effective HSP length: 20
effective length of query: 1606
effective length of database: 210,158,737
effective search space: 337514931622
effective search space used: 337514931622
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)