BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAY3d01.yg.3.1
(808 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF385369.1|CF385369 RTDR1_3_D06.g1_A015 Loblolly pine ro... 36 2.1
gb|CF403050.1|CF403050 RTWW1_24_D01.g1_A015 Well-watered lo... 36 2.1
gb|CF470604.1|CF470604 RTDS1_13_F12.g1_A015 Drought-stresse... 36 2.1
gb|CF477224.1|CF477224 RTWW3_6_C05.g1_A022 Well-watered lob... 36 2.1
gb|CF478079.1|CF478079 RTWW3_17_A03.g1_A022 Well-watered lo... 36 2.1
gb|CF478714.1|CF478714 RTWW3_16_C01.g1_A022 Well-watered lo... 36 2.1
gb|CF665321.1|CF665321 RTCNT1_15_F12.b1_A029 Root control P... 36 2.1
gb|CF665399.1|CF665399 RTCNT1_15_F12.g1_A029 Root control P... 36 2.1
gb|CF672481.1|CF672481 RTCNT1_63_H08.g1_A029 Root control P... 36 2.1
gb|CO163245.1|CO163245 FLD1_40_H07.b1_A029 Root flooded Pin... 36 2.1
gb|CO163329.1|CO163329 FLD1_40_H07.g1_A029 Root flooded Pin... 36 2.1
gb|CO199009.1|CO199009 GEO1_18_D09.b1_A029 Root gravitropis... 36 2.1
gb|CO199076.1|CO199076 GEO1_18_D09.g1_A029 Root gravitropis... 36 2.1
gb|CV134766.1|CV134766 EST845975 Sequencing ESTs from loblo... 36 2.1
gb|CV135667.1|CV135667 EST846876 Sequencing ESTs from loblo... 36 2.1
gb|DN450999.1|DN450999 EST946798 Sequencing ESTs from loblo... 36 2.1
gb|DN465400.1|DN465400 EST961199 Sequencing ESTs from loblo... 36 2.1
gb|DR019239.1|DR019239 STRS1_28_E01.g1_A034 Shoot tip pitch... 36 2.1
gb|DR021742.1|DR021742 STRS1_46_D10.g1_A034 Shoot tip pitch... 36 2.1
gb|DR052967.1|DR052967 RTCA1_8_C03.b1_A029 Roots minus calc... 36 2.1
gb|DR053028.1|DR053028 RTCA1_8_C03.g1_A029 Roots minus calc... 36 2.1
gb|DR092381.1|DR092381 STRR1_1_C02.b1_A033 Stem Response Re... 36 2.1
gb|DR092463.1|DR092463 STRR1_1_C02.g1_A033 Stem Response Re... 36 2.1
gb|DR120031.1|DR120031 RTMG1_27_C11.b1_A029 Roots minus mag... 36 2.1
gb|DR692727.1|DR692727 EST1082815 Normalized pine embryo li... 36 2.1
gb|DT626091.1|DT626091 EST1158015 Sequencing ESTs from lobl... 36 2.1
gb|CZ895751.1|CZ895751 226_1_12340638_5489_37959_059 Pine m... 34 8.5
gb|AW065196.1|AW065196 ST40G11 Pine TriplEx shoot tip libra... 34 8.5
gb|BM134267.1|BM134267 NXLV_018_H03_F NXLV (Nsf Xylem Late ... 34 8.5
gb|CO199759.1|CO199759 GEO2_3_G05.b1_A032 Root gravitropism... 34 8.5
gb|CO200184.1|CO200184 GEO2_5_H11.g1_A032 Root gravitropism... 34 8.5
gb|CX648936.1|CX648936 COLD1_31_H08.g1_A029 Root cold Pinus... 34 8.5
gb|CX712609.1|CX712609 RTPQ1_3_C08.g1_A032 Roots treated wi... 34 8.5
gb|DR094662.1|DR094662 STRR1_16_A08.b1_A033 Stem Response R... 34 8.5
gb|DR094737.1|DR094737 STRR1_16_A08.g1_A033 Stem Response R... 34 8.5
gb|DR687844.1|DR687844 EST1077927 Normalized pine embryo li... 34 8.5
gb|DR690797.1|DR690797 EST1080883 Normalized pine embryo li... 34 8.5
gb|DR744734.1|DR744734 RTCU1_24_C03.g1_A029 Roots plus adde... 34 8.5
gb|DT634364.1|DT634364 EST1149295 Normalized pine embryo li... 34 8.5
>gb|CF385369.1|CF385369 RTDR1_3_D06.g1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_3_D06_A015 5', mRNA
sequence
Length = 665
Score = 36.2 bits (18), Expect = 2.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 273 tttgtattgcttttgcaa 290
||||||||||||||||||
Sbjct: 485 tttgtattgcttttgcaa 502
>gb|CF403050.1|CF403050 RTWW1_24_D01.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_24_D01_A015 5', mRNA sequence
Length = 669
Score = 36.2 bits (18), Expect = 2.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 273 tttgtattgcttttgcaa 290
||||||||||||||||||
Sbjct: 481 tttgtattgcttttgcaa 498
>gb|CF470604.1|CF470604 RTDS1_13_F12.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_13_F12_A015 5', mRNA sequence
Length = 721
Score = 36.2 bits (18), Expect = 2.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 273 tttgtattgcttttgcaa 290
||||||||||||||||||
Sbjct: 533 tttgtattgcttttgcaa 550
>gb|CF477224.1|CF477224 RTWW3_6_C05.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_6_C05_A022 5', mRNA sequence
Length = 743
Score = 36.2 bits (18), Expect = 2.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 273 tttgtattgcttttgcaa 290
||||||||||||||||||
Sbjct: 616 tttgtattgcttttgcaa 633
>gb|CF478079.1|CF478079 RTWW3_17_A03.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_17_A03_A022 5', mRNA sequence
Length = 709
Score = 36.2 bits (18), Expect = 2.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 273 tttgtattgcttttgcaa 290
||||||||||||||||||
Sbjct: 538 tttgtattgcttttgcaa 555
>gb|CF478714.1|CF478714 RTWW3_16_C01.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_16_C01_A022 5', mRNA sequence
Length = 656
Score = 36.2 bits (18), Expect = 2.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 273 tttgtattgcttttgcaa 290
||||||||||||||||||
Sbjct: 473 tttgtattgcttttgcaa 490
>gb|CF665321.1|CF665321 RTCNT1_15_F12.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_15_F12_A029 3', mRNA sequence
Length = 709
Score = 36.2 bits (18), Expect = 2.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 273 tttgtattgcttttgcaa 290
||||||||||||||||||
Sbjct: 159 tttgtattgcttttgcaa 176
>gb|CF665399.1|CF665399 RTCNT1_15_F12.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_15_F12_A029 5', mRNA sequence
Length = 632
Score = 36.2 bits (18), Expect = 2.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 273 tttgtattgcttttgcaa 290
||||||||||||||||||
Sbjct: 588 tttgtattgcttttgcaa 605
>gb|CF672481.1|CF672481 RTCNT1_63_H08.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_63_H08_A029 5', mRNA sequence
Length = 695
Score = 36.2 bits (18), Expect = 2.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 273 tttgtattgcttttgcaa 290
||||||||||||||||||
Sbjct: 545 tttgtattgcttttgcaa 562
>gb|CO163245.1|CO163245 FLD1_40_H07.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_40_H07_A029 3', mRNA sequence
Length = 764
Score = 36.2 bits (18), Expect = 2.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 273 tttgtattgcttttgcaa 290
||||||||||||||||||
Sbjct: 142 tttgtattgcttttgcaa 159
>gb|CO163329.1|CO163329 FLD1_40_H07.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_40_H07_A029 5', mRNA sequence
Length = 764
Score = 36.2 bits (18), Expect = 2.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 273 tttgtattgcttttgcaa 290
||||||||||||||||||
Sbjct: 137 tttgtattgcttttgcaa 154
>gb|CO199009.1|CO199009 GEO1_18_D09.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_18_D09_A029 3', mRNA sequence
Length = 666
Score = 36.2 bits (18), Expect = 2.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 273 tttgtattgcttttgcaa 290
||||||||||||||||||
Sbjct: 41 tttgtattgcttttgcaa 58
>gb|CO199076.1|CO199076 GEO1_18_D09.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_18_D09_A029 5', mRNA sequence
Length = 769
Score = 36.2 bits (18), Expect = 2.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 273 tttgtattgcttttgcaa 290
||||||||||||||||||
Sbjct: 399 tttgtattgcttttgcaa 416
>gb|CV134766.1|CV134766 EST845975 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PICCF19 5' end, mRNA sequence
Length = 968
Score = 36.2 bits (18), Expect = 2.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 273 tttgtattgcttttgcaa 290
||||||||||||||||||
Sbjct: 549 tttgtattgcttttgcaa 566
>gb|CV135667.1|CV135667 EST846876 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PICMF03 5' end, mRNA sequence
Length = 938
Score = 36.2 bits (18), Expect = 2.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 273 tttgtattgcttttgcaa 290
||||||||||||||||||
Sbjct: 505 tttgtattgcttttgcaa 522
>gb|DN450999.1|DN450999 EST946798 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIEY50 5' end, mRNA sequence
Length = 909
Score = 36.2 bits (18), Expect = 2.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 273 tttgtattgcttttgcaa 290
||||||||||||||||||
Sbjct: 549 tttgtattgcttttgcaa 566
>gb|DN465400.1|DN465400 EST961199 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIJP06 5' end, mRNA sequence
Length = 943
Score = 36.2 bits (18), Expect = 2.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 273 tttgtattgcttttgcaa 290
||||||||||||||||||
Sbjct: 587 tttgtattgcttttgcaa 604
>gb|DR019239.1|DR019239 STRS1_28_E01.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_28_E01_A034 5', mRNA sequence
Length = 806
Score = 36.2 bits (18), Expect = 2.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 273 tttgtattgcttttgcaa 290
||||||||||||||||||
Sbjct: 326 tttgtattgcttttgcaa 343
>gb|DR021742.1|DR021742 STRS1_46_D10.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_46_D10_A034 5', mRNA sequence
Length = 633
Score = 36.2 bits (18), Expect = 2.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 273 tttgtattgcttttgcaa 290
||||||||||||||||||
Sbjct: 488 tttgtattgcttttgcaa 505
>gb|DR052967.1|DR052967 RTCA1_8_C03.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_8_C03_A029 3', mRNA sequence
Length = 754
Score = 36.2 bits (18), Expect = 2.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 273 tttgtattgcttttgcaa 290
||||||||||||||||||
Sbjct: 247 tttgtattgcttttgcaa 264
>gb|DR053028.1|DR053028 RTCA1_8_C03.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_8_C03_A029 5', mRNA sequence
Length = 796
Score = 36.2 bits (18), Expect = 2.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 273 tttgtattgcttttgcaa 290
||||||||||||||||||
Sbjct: 595 tttgtattgcttttgcaa 612
>gb|DR092381.1|DR092381 STRR1_1_C02.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_1_C02_A033 3', mRNA sequence
Length = 915
Score = 36.2 bits (18), Expect = 2.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 273 tttgtattgcttttgcaa 290
||||||||||||||||||
Sbjct: 538 tttgtattgcttttgcaa 521
>gb|DR092463.1|DR092463 STRR1_1_C02.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_1_C02_A033 5', mRNA sequence
Length = 883
Score = 36.2 bits (18), Expect = 2.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 273 tttgtattgcttttgcaa 290
||||||||||||||||||
Sbjct: 621 tttgtattgcttttgcaa 604
>gb|DR120031.1|DR120031 RTMG1_27_C11.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_27_C11_A029 3', mRNA sequence
Length = 710
Score = 36.2 bits (18), Expect = 2.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 273 tttgtattgcttttgcaa 290
||||||||||||||||||
Sbjct: 94 tttgtattgcttttgcaa 111
>gb|DR692727.1|DR692727 EST1082815 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADP65 3' end, mRNA sequence
Length = 871
Score = 36.2 bits (18), Expect = 2.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 273 tttgtattgcttttgcaa 290
||||||||||||||||||
Sbjct: 380 tttgtattgcttttgcaa 397
>gb|DT626091.1|DT626091 EST1158015 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMA694 5' end, mRNA sequence
Length = 874
Score = 36.2 bits (18), Expect = 2.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 273 tttgtattgcttttgcaa 290
||||||||||||||||||
Sbjct: 549 tttgtattgcttttgcaa 566
>gb|CZ895751.1|CZ895751 226_1_12340638_5489_37959_059 Pine methylation unfiltered library
(LibID: 226) Pinus taeda genomic, DNA sequence
Length = 600
Score = 34.2 bits (17), Expect = 8.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 328 ggaaaatggaagagaag 344
|||||||||||||||||
Sbjct: 205 ggaaaatggaagagaag 221
>gb|AW065196.1|AW065196 ST40G11 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST40G11, mRNA sequence
Length = 387
Score = 34.2 bits (17), Expect = 8.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 584 aaccttgttgctgtcat 600
|||||||||||||||||
Sbjct: 211 aaccttgttgctgtcat 227
>gb|BM134267.1|BM134267 NXLV_018_H03_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_018_H03 5', mRNA sequence
Length = 214
Score = 34.2 bits (17), Expect = 8.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 315 ttgatttctcagaggaa 331
|||||||||||||||||
Sbjct: 173 ttgatttctcagaggaa 157
>gb|CO199759.1|CO199759 GEO2_3_G05.b1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_3_G05_A032 3', mRNA sequence
Length = 806
Score = 34.2 bits (17), Expect = 8.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 754 ttctccattgaaacgcc 770
|||||||||||||||||
Sbjct: 806 ttctccattgaaacgcc 790
>gb|CO200184.1|CO200184 GEO2_5_H11.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_5_H11_A032 5', mRNA sequence
Length = 812
Score = 34.2 bits (17), Expect = 8.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 441 atcttgctgcttgtttt 457
|||||||||||||||||
Sbjct: 59 atcttgctgcttgtttt 43
>gb|CX648936.1|CX648936 COLD1_31_H08.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_31_H08_A029 5', mRNA sequence
Length = 645
Score = 34.2 bits (17), Expect = 8.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 315 ttgatttctcagaggaa 331
|||||||||||||||||
Sbjct: 368 ttgatttctcagaggaa 352
>gb|CX712609.1|CX712609 RTPQ1_3_C08.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_3_C08_A032 5', mRNA sequence
Length = 851
Score = 34.2 bits (17), Expect = 8.5
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 774 gtgttcgtgtcaatgtgctct 794
|||||| ||||||||||||||
Sbjct: 707 gtgttcttgtcaatgtgctct 727
>gb|DR094662.1|DR094662 STRR1_16_A08.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_16_A08_A033 3', mRNA sequence
Length = 759
Score = 34.2 bits (17), Expect = 8.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 315 ttgatttctcagaggaa 331
|||||||||||||||||
Sbjct: 33 ttgatttctcagaggaa 17
>gb|DR094737.1|DR094737 STRR1_16_A08.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_16_A08_A033 5', mRNA sequence
Length = 858
Score = 34.2 bits (17), Expect = 8.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 315 ttgatttctcagaggaa 331
|||||||||||||||||
Sbjct: 316 ttgatttctcagaggaa 300
>gb|DR687844.1|DR687844 EST1077927 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABX25 3' end, mRNA sequence
Length = 841
Score = 34.2 bits (17), Expect = 8.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 527 ctagtttatgatgatac 543
|||||||||||||||||
Sbjct: 114 ctagtttatgatgatac 98
>gb|DR690797.1|DR690797 EST1080883 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACZ43 3' end, mRNA sequence
Length = 859
Score = 34.2 bits (17), Expect = 8.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 30 aggagagtaggagaccg 46
|||||||||||||||||
Sbjct: 691 aggagagtaggagaccg 707
>gb|DR744734.1|DR744734 RTCU1_24_C03.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_24_C03_A029 5', mRNA sequence
Length = 168
Score = 34.2 bits (17), Expect = 8.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 441 atcttgctgcttgtttt 457
|||||||||||||||||
Sbjct: 66 atcttgctgcttgtttt 50
>gb|DT634364.1|DT634364 EST1149295 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMG518 3' end, mRNA sequence
Length = 803
Score = 34.2 bits (17), Expect = 8.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 527 ctagtttatgatgatac 543
|||||||||||||||||
Sbjct: 122 ctagtttatgatgatac 106
Database: Pinus_nucl_with_EST.fasta
Posted date: May 2, 2006 3:25 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 110,978
Number of Sequences: 355925
Number of extensions: 110978
Number of successful extensions: 32801
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32762
Number of HSP's gapped (non-prelim): 39
length of query: 808
length of database: 217,277,237
effective HSP length: 19
effective length of query: 789
effective length of database: 210,514,662
effective search space: 166096068318
effective search space used: 166096068318
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)