BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAS2h09.yg.3.5
(1992 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ634727.1|BQ634727 NXRV072_E09_F NXRV (Nsf Xylem Root w... 107 2e-021
gb|DR050898.1|DR050898 RTBOR1_26_H05.b1_A029 Roots plus add... 107 2e-021
gb|BQ290999.1|BQ290999 NXRV054_D07_F NXRV (Nsf Xylem Root w... 92 1e-016
gb|BX784172.1|BX784172 BX784172 Pinus pinaster differenciat... 64 2e-008
gb|AY356371.1| Pinus taeda R2R3-MYB transcription factor (M... 64 2e-008
gb|CO172303.1|CO172303 NDL1_28_G10.g1_A029 Needles control ... 58 1e-006
gb|DR071883.1|DR071883 RTDK1_22_E02.g1_A029 Roots, dark Pin... 58 1e-006
gb|DR694707.1|DR694707 EST1084799 Normalized pine embryo li... 58 1e-006
gb|DT638995.1|DT638995 EST1153926 Normalized pine embryo li... 58 1e-006
gb|AY356372.1| Pinus taeda R2R3-MYB transcription factor (M... 58 1e-006
gb|CF390133.1|CF390133 RTDR2_12_C07.g1_A021 Loblolly pine r... 56 6e-006
gb|BE241255.1|BE241255 NXNV_183_D12_F Nsf Xylem Normal wood... 46 0.006
gb|BG319376.1|BG319376 NXPV_027_C05_F NXPV (Nsf Xylem Plani... 46 0.006
gb|CD022618.1|CD022618 NXPV_071_H11_F NXPV (Nsf Xylem Plani... 46 0.006
gb|CF385274.1|CF385274 RTDR1_2_D01.g1_A015 Loblolly pine ro... 46 0.006
gb|CF388652.1|CF388652 RTDR2_4_A10.g1_A021 Loblolly pine ro... 46 0.006
gb|CF389081.1|CF389081 RTDR2_13_A10.g1_A021 Loblolly pine r... 46 0.006
gb|CF400460.1|CF400460 RTWW1_5_H12.g1_A015 Well-watered lob... 46 0.006
gb|CF401736.1|CF401736 RTWW1_14_C05.g1_A015 Well-watered lo... 46 0.006
gb|CF402623.1|CF402623 RTWW1_21_B11.g1_A015 Well-watered lo... 46 0.006
gb|CO162411.1|CO162411 FLD1_35_D02.b1_A029 Root flooded Pin... 46 0.006
gb|CV034082.1|CV034082 RTNACL1_38_B11.g1_A029 Roots plus ad... 46 0.006
gb|CX646616.1|CX646616 COLD1_10_A05.g1_A029 Root cold Pinus... 46 0.006
gb|CX648418.1|CX648418 COLD1_28_B12.g1_A029 Root cold Pinus... 46 0.006
gb|DR057958.1|DR057958 RTNIT1_8_G05.g1_A029 Roots minus nit... 46 0.006
gb|DR111427.1|DR111427 RTS1_17_F02.g1_A029 Roots minus sulf... 46 0.006
gb|DR164052.1|DR164052 RTFE1_46_B11.g1_A029 Roots minus iro... 46 0.006
gb|DR168212.1|DR168212 RTPHOS1_23_H12.g1_A029 Roots minus p... 46 0.006
gb|DR178268.1|DR178268 RTMNUT1_10_C01.g1_A029 Roots minus m... 46 0.006
gb|DR179654.1|DR179654 RTMNUT1_23_B05.g2_A029 Roots minus m... 46 0.006
gb|DR387764.1|DR387764 RTHG1_24_A11.b1_A029 Roots plus adde... 46 0.006
gb|DR387774.1|DR387774 RTHG1_24_B11.b1_A029 Roots plus adde... 46 0.006
gb|BQ697390.1|BQ697390 NXPV_053_G01_F NXPV (Nsf Xylem Plani... 44 0.022
gb|CO164542.1|CO164542 FLD1_48_E08.g1_A029 Root flooded Pin... 44 0.022
gb|CO366297.1|CO366297 RTK1_27_B09.b1_A029 Roots minus pota... 44 0.022
gb|DR167765.1|DR167765 RTPHOS1_20_H05.g1_A029 Roots minus p... 44 0.022
gb|DR683147.1|DR683147 EST1073223 Normalized pine embryo li... 42 0.087
gb|DT631233.1|DT631233 EST1146164 Normalized pine embryo li... 42 0.087
gb|CO201585.1|CO201585 RTCNT2_6_F07.g1_A029 Root control 2 ... 38 1.4
gb|DR051127.1|DR051127 RTBOR1_27_G08.g1_A029 Roots plus add... 38 1.4
gb|DR163874.1|DR163874 RTFE1_45_A12.g1_A029 Roots minus iro... 38 1.4
gb|DR167401.1|DR167401 RTPHOS1_18_C09.g1_A029 Roots minus p... 38 1.4
gb|BX251080.1|BX251080 BX251080 Pinus pinaster differenciat... 36 5.3
gb|CF671302.1|CF671302 RTCNT1_56_D10.b1_A029 Root control P... 36 5.3
gb|CO162116.1|CO162116 FLD1_33_G01.b1_A029 Root flooded Pin... 36 5.3
gb|CO166854.1|CO166854 FLD1_65_B04.b1_A029 Root flooded Pin... 36 5.3
gb|CO166912.1|CO166912 FLD1_65_A04.g1_A029 Root flooded Pin... 36 5.3
gb|CO166923.1|CO166923 FLD1_65_B04.g1_A029 Root flooded Pin... 36 5.3
gb|CO169403.1|CO169403 NDL1_6_G06.g1_A029 Needles control P... 36 5.3
gb|CO175689.1|CO175689 NDL1_56_H01.b1_A029 Needles control ... 36 5.3
gb|CO198398.1|CO198398 GEO1_13_H06.b1_A029 Root gravitropis... 36 5.3
gb|CO412800.1|CO412800 EST843185 Sequencing ESTs from loblo... 36 5.3
gb|CO369151.1|CO369151 RTK1_45_F12.b1_A029 Roots minus pota... 36 5.3
gb|CO369670.1|CO369670 RTK1_48_E01.g1_A029 Roots minus pota... 36 5.3
gb|CV032019.1|CV032019 RTNACL1_5_E07.b1_A029 Roots plus add... 36 5.3
gb|DR015383.1|DR015383 STRS1_3_E01.b1_A034 Shoot tip pitch ... 36 5.3
gb|DR015463.1|DR015463 STRS1_3_E01.g1_A034 Shoot tip pitch ... 36 5.3
gb|DR022289.1|DR022289 STRS1_50_C04.b1_A034 Shoot tip pitch... 36 5.3
gb|DR024265.1|DR024265 STRS1_63_E05.g1_A034 Shoot tip pitch... 36 5.3
gb|DR054764.1|DR054764 RTCA1_19_A08.g1_A029 Roots minus cal... 36 5.3
gb|DR078653.1|DR078653 RTFEPL1_6_B12.b1_A029 Roots plus add... 36 5.3
gb|DR090168.1|DR090168 RTAL1_13_D06.b1_A029 Roots plus adde... 36 5.3
gb|DR101025.1|DR101025 STRR1_70_B06.b1_A033 Stem Response R... 36 5.3
gb|DR161905.1|DR161905 RTFE1_14_D02.g1_A029 Roots minus iro... 36 5.3
gb|DR177656.1|DR177656 RTMNUT1_6_D04.g1_A029 Roots minus mi... 36 5.3
gb|DR384642.1|DR384642 RTHG1_3_C11.g1_A029 Roots plus added... 36 5.3
gb|DR685654.1|DR685654 EST1075731 Normalized pine embryo li... 36 5.3
gb|DR686456.1|DR686456 EST1076534 Normalized pine embryo li... 36 5.3
gb|DR686808.1|DR686808 EST1076886 Normalized pine embryo li... 36 5.3
gb|DR690479.1|DR690479 EST1080565 Normalized pine embryo li... 36 5.3
gb|DR691208.1|DR691208 EST1081294 Normalized pine embryo li... 36 5.3
gb|DR694473.1|DR694473 EST1084565 Normalized pine embryo li... 36 5.3
gb|DT625989.1|DT625989 EST1157913 Sequencing ESTs from lobl... 36 5.3
gb|DT626048.1|DT626048 EST1157972 Sequencing ESTs from lobl... 36 5.3
gb|DT633383.1|DT633383 EST1148314 Normalized pine embryo li... 36 5.3
gb|DT633848.1|DT633848 EST1148779 Normalized pine embryo li... 36 5.3
gb|DT638742.1|DT638742 EST1153673 Normalized pine embryo li... 36 5.3
>gb|BQ634727.1|BQ634727 NXRV072_E09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV072_E09 5' similar to Arabidopsis thaliana
sequence At1g09540 putative transcription factor (MYB61)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 742
Score = 107 bits (54), Expect = 2e-021
Identities = 91/104 (87%)
Strand = Plus / Plus
Query: 507 gtcctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgag 566
|||||||||||||||||||||||||| ||| | || ||||| || || |||||||| |||
Sbjct: 575 gtcctcgggaacaggtggtctcaaatagcaacacacctgcccggaagnactgataacgag 634
Query: 567 atcaagaatctatggaactcgtgcatcaagaagaagctgaggca 610
|||||||| || |||||||||||||| || |||||||| |||||
Sbjct: 635 atcaagaacctctggaactcgtgcattaaaaagaagctnaggca 678
>gb|DR050898.1|DR050898 RTBOR1_26_H05.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_26_H05_A029 3', mRNA sequence
Length = 793
Score = 107 bits (54), Expect = 2e-021
Identities = 111/130 (85%)
Strand = Plus / Minus
Query: 507 gtcctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgag 566
|||||||||||||||||||||||||| ||| | || ||||| || || |||||||| |||
Sbjct: 450 gtcctcgggaacaggtggtctcaaatagcaacacatctgcccggaagaactgataacgag 391
Query: 567 atcaagaatctatggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatccc 626
|||||||| || |||||||||||||| || |||||||| ||||| |||||| |||||
Sbjct: 390 atcaagaacctctggaactcgtgcattaaaaagaagcttaggcaacgaggcatagatcct 331
Query: 627 aacacccaca 636
||||| ||||
Sbjct: 330 aacacgcaca 321
>gb|BQ290999.1|BQ290999 NXRV054_D07_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV054_D07 5' similar to Arabidopsis thaliana
sequence At1g09540 putative transcription factor (MYB61)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 764
Score = 91.7 bits (46), Expect = 1e-016
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 507 gtcctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgag 566
|||||||||||||||||||||||||| ||| | || ||||| || || |||||||| |||
Sbjct: 569 gtcctcgggaacaggtggtctcaaatagcaacacacctgcccggaagaactgataacgag 628
Query: 567 atcaagaatctatggaactcgtgcat 592
|||||||| || ||||||||||||||
Sbjct: 629 atcaagaacctctggaactcgtgcat 654
>gb|BX784172.1|BX784172 BX784172 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 130B11, mRNA sequence
Length = 685
Score = 63.9 bits (32), Expect = 2e-008
Identities = 122/152 (80%)
Strand = Plus / Plus
Query: 303 ctctggtcccctgaggaggatgagaaactcatgaatcacataacaaagcatggccatggc 362
|||||||| |||||||||||||| |||||||| || |||| | || | ||||| ||
Sbjct: 107 ctctggtcgcctgaggaggatgataaactcatcaactacatgatgaaaaacggccagggt 166
Query: 363 tgctggagctctgttcccaaactcgctgggcttcaaaggtgcggaaagagttgtaggctg 422
||||||||| ||| |||| | ||||| || || || |||||||| || |||||||||
Sbjct: 167 tgctggagcgatgtcgccaagcaagctggtctgcagagatgcggaaaaagctgtaggctg 226
Query: 423 aggtggataaactatctgaggccagacctcaa 454
|||||||| |||||| | ||||| ||||||||
Sbjct: 227 aggtggattaactatttaaggcccgacctcaa 258
Score = 50.1 bits (25), Expect = 4e-004
Identities = 76/93 (81%)
Strand = Plus / Plus
Query: 510 ctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatc 569
||||| |||||||||||||| |||||||| | |||| || | || || || ||||||
Sbjct: 314 ctcggcaacaggtggtctcagattgcagcccgtttgcccggacgtacggacaacgagatc 373
Query: 570 aagaatctatggaactcgtgcatcaagaagaag 602
|||||| | |||||||| ||||| |||||||||
Sbjct: 374 aagaatttctggaactcctgcataaagaagaag 406
>gb|AY356371.1| Pinus taeda R2R3-MYB transcription factor (MYB4) mRNA, complete cds
Length = 945
Score = 63.9 bits (32), Expect = 2e-008
Identities = 122/152 (80%)
Strand = Plus / Plus
Query: 303 ctctggtcccctgaggaggatgagaaactcatgaatcacataacaaagcatggccatggc 362
|||||||| |||||||||||||| |||||||| || |||| | || | ||||| ||
Sbjct: 61 ctctggtcgcctgaggaggatgataaactcatcaactacatgatgaaaaacggccagggt 120
Query: 363 tgctggagctctgttcccaaactcgctgggcttcaaaggtgcggaaagagttgtaggctg 422
||||||||| ||| |||| | ||||| || || || |||||||| || |||||||||
Sbjct: 121 tgctggagcgatgtcgccaagcaagctggtctgcagagatgcggaaaaagctgtaggctg 180
Query: 423 aggtggataaactatctgaggccagacctcaa 454
|||||||| |||||| | ||||| ||||||||
Sbjct: 181 aggtggattaactatttaaggcccgacctcaa 212
Score = 58.0 bits (29), Expect = 1e-006
Identities = 77/93 (82%)
Strand = Plus / Plus
Query: 510 ctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatc 569
||||| |||||||||||||| |||||||| | | |||| || | || || || ||||||
Sbjct: 268 ctcggcaacaggtggtctcagattgcagcccggttgcccggacgtacggacaacgagatc 327
Query: 570 aagaatctatggaactcgtgcatcaagaagaag 602
|||||| | |||||||| ||||| |||||||||
Sbjct: 328 aagaatttctggaactcctgcataaagaagaag 360
>gb|CO172303.1|CO172303 NDL1_28_G10.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_28_G10_A029 5', mRNA sequence
Length = 751
Score = 58.0 bits (29), Expect = 1e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 513 gggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaag 572
||||| |||||||| | ||| || ||||| |||||||||| |||||||| |||||||||
Sbjct: 152 gggaataggtggtcacgaatcgctgcgcaattgccagggagaactgataacgagatcaag 211
Query: 573 aatctatggaactcgtgcatcaagaagaa 601
||| |||||| || | |||||||||||
Sbjct: 212 aattactggaacacgaggatcaagaagaa 240
>gb|DR071883.1|DR071883 RTDK1_22_E02.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_22_E02_A029 5', mRNA sequence
Length = 708
Score = 58.0 bits (29), Expect = 1e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 513 gggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaag 572
||||| |||||||| | ||| || ||||| |||||||||| |||||||| |||||||||
Sbjct: 427 gggaataggtggtcacgaatcgctgcgcaattgccagggagaactgataacgagatcaag 486
Query: 573 aatctatggaactcgtgcatcaagaagaa 601
||| |||||| || | |||||||||||
Sbjct: 487 aattactggaacacgaggatcaagaagaa 515
>gb|DR694707.1|DR694707 EST1084799 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEF89 3' end, mRNA sequence
Length = 790
Score = 58.0 bits (29), Expect = 1e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 513 gggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaag 572
||||| |||||||| | ||| || ||||| |||||||||| |||||||| |||||||||
Sbjct: 194 gggaataggtggtcacgaatcgctgcgcaattgccagggagaactgataacgagatcaag 253
Query: 573 aatctatggaactcgtgcatcaagaagaa 601
||| |||||| || | |||||||||||
Sbjct: 254 aattactggaacacgaggatcaagaagaa 282
>gb|DT638995.1|DT638995 EST1153926 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHL85 3' end, mRNA sequence
Length = 812
Score = 58.0 bits (29), Expect = 1e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 513 gggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaag 572
||||| |||||||| | ||| || ||||| |||||||||| |||||||| |||||||||
Sbjct: 202 gggaataggtggtcacgaatcgctgcgcaattgccagggagaactgataacgagatcaag 261
Query: 573 aatctatggaactcgtgcatcaagaagaa 601
||| |||||| || | |||||||||||
Sbjct: 262 aattactggaacacgaggatcaagaagaa 290
>gb|AY356372.1| Pinus taeda R2R3-MYB transcription factor (MYB1) mRNA, complete cds
Length = 1023
Score = 58.0 bits (29), Expect = 1e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 513 gggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaag 572
||||| |||||||| | ||| || ||||| |||||||||| |||||||| |||||||||
Sbjct: 256 gggaataggtggtcacgaatcgctgcgcaattgccagggagaactgataacgagatcaag 315
Query: 573 aatctatggaactcgtgcatcaagaagaa 601
||| |||||| || | |||||||||||
Sbjct: 316 aattactggaacacgaggatcaagaagaa 344
>gb|CF390133.1|CF390133 RTDR2_12_C07.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_12_C07_A021 5', mRNA
sequence
Length = 712
Score = 56.0 bits (28), Expect = 6e-006
Identities = 70/84 (83%)
Strand = Plus / Plus
Query: 518 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 577
||||||||| | ||| || ||||| |||||||||| |||||||| ||||||||||||
Sbjct: 537 caggtggtcacgaatcgctgcgcaattgccagggagaactgataacgagatcaagaatta 596
Query: 578 atggaactcgtgcatcaagaagaa 601
|||||| || | |||||||||||
Sbjct: 597 ctggaacacgaggatcaagaagaa 620
>gb|BE241255.1|BE241255 NXNV_183_D12_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_183_D12 5' similar to Arabidopsis thaliana
sequence At5g12870 putative transcription factor (MYB46)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 419
Score = 46.1 bits (23), Expect = 0.006
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 564 gagatcaagaatctatggaactcgtgcatcaagaagaag 602
|||||||||||| | |||||||| ||||| |||||||||
Sbjct: 104 gagatcaagaatttctggaactcctgcataaagaagaag 142
>gb|BG319376.1|BG319376 NXPV_027_C05_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_027_C05 5' similar to Arabidopsis
thaliana sequence At1g63910 putative MYB family
transcription factor see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 296
Score = 46.1 bits (23), Expect = 0.006
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 300 gggctctggtcccctgaggaggatgagaaactcatgaatcacataacaaagcatggccat 359
||||| ||||| || || ||||||||||| ||||| ||| ||||||| ||| |||| ||
Sbjct: 54 gggctatggtcaccagatgaggatgagaagctcatcaattacataaccaagtatggttat 113
Query: 360 ggctgctggag 370
||||| |||||
Sbjct: 114 ggctgttggag 124
>gb|CD022618.1|CD022618 NXPV_071_H11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_071_H11 5' similar to Arabidopsis
thaliana sequence At1g63910 putative MYB family
transcription factor see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 193
Score = 46.1 bits (23), Expect = 0.006
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 300 gggctctggtcccctgaggaggatgagaaactcatgaatcacataacaaagcatggccat 359
||||| ||||| || || ||||||||||| ||||| ||| ||||||| ||| |||| ||
Sbjct: 54 gggctatggtcaccagatgaggatgagaagctcatcaattacataaccaagtatggttat 113
Query: 360 ggctgctggag 370
||||| |||||
Sbjct: 114 ggctgttggag 124
>gb|CF385274.1|CF385274 RTDR1_2_D01.g1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_2_D01_A015 5', mRNA
sequence
Length = 703
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 402 tgcggaaagagttgtaggctgaggtggataaacta 436
||||||||||| ||||||||| | |||||||||||
Sbjct: 41 tgcggaaagagctgtaggctgcgatggataaacta 75
>gb|CF388652.1|CF388652 RTDR2_4_A10.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_4_A10_A021 5', mRNA
sequence
Length = 760
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 402 tgcggaaagagttgtaggctgaggtggataaacta 436
||||||||||| ||||||||| | |||||||||||
Sbjct: 169 tgcggaaagagctgtaggctgcgatggataaacta 203
>gb|CF389081.1|CF389081 RTDR2_13_A10.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_13_A10_A021 5', mRNA
sequence
Length = 743
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 402 tgcggaaagagttgtaggctgaggtggataaacta 436
||||||||||| ||||||||| | |||||||||||
Sbjct: 95 tgcggaaagagctgtaggctgcgatggataaacta 129
>gb|CF400460.1|CF400460 RTWW1_5_H12.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_5_H12_A015 5', mRNA sequence
Length = 747
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 402 tgcggaaagagttgtaggctgaggtggataaacta 436
||||||||||| ||||||||| | |||||||||||
Sbjct: 103 tgcggaaagagctgtaggctgcgatggataaacta 137
>gb|CF401736.1|CF401736 RTWW1_14_C05.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_14_C05_A015 5', mRNA sequence
Length = 792
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 402 tgcggaaagagttgtaggctgaggtggataaacta 436
||||||||||| ||||||||| | |||||||||||
Sbjct: 138 tgcggaaagagctgtaggctgcgatggataaacta 172
>gb|CF402623.1|CF402623 RTWW1_21_B11.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_21_B11_A015 5', mRNA sequence
Length = 755
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 402 tgcggaaagagttgtaggctgaggtggataaacta 436
||||||||||| ||||||||| | |||||||||||
Sbjct: 115 tgcggaaagagctgtaggctgcgatggataaacta 149
>gb|CO162411.1|CO162411 FLD1_35_D02.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_35_D02_A029 3', mRNA sequence
Length = 717
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 402 tgcggaaagagttgtaggctgaggtggataaacta 436
||||||||||| ||||||||| | |||||||||||
Sbjct: 661 tgcggaaagagctgtaggctgcgatggataaacta 627
>gb|CV034082.1|CV034082 RTNACL1_38_B11.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_38_B11_A029 5', mRNA sequence
Length = 734
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 402 tgcggaaagagttgtaggctgaggtggataaacta 436
||||||||||| ||||||||| | |||||||||||
Sbjct: 146 tgcggaaagagctgtaggctgcgatggataaacta 180
>gb|CX646616.1|CX646616 COLD1_10_A05.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_10_A05_A029 5', mRNA sequence
Length = 887
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 402 tgcggaaagagttgtaggctgaggtggataaacta 436
||||||||||| ||||||||| | |||||||||||
Sbjct: 138 tgcggaaagagctgtaggctgcgatggataaacta 172
>gb|CX648418.1|CX648418 COLD1_28_B12.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_28_B12_A029 5', mRNA sequence
Length = 868
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 402 tgcggaaagagttgtaggctgaggtggataaacta 436
||||||||||| ||||||||| | |||||||||||
Sbjct: 150 tgcggaaagagctgtaggctgcgatggataaacta 184
>gb|DR057958.1|DR057958 RTNIT1_8_G05.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_8_G05_A029 5', mRNA sequence
Length = 849
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 402 tgcggaaagagttgtaggctgaggtggataaacta 436
||||||||||| ||||||||| | |||||||||||
Sbjct: 106 tgcggaaagagctgtaggctgcgatggataaacta 140
>gb|DR111427.1|DR111427 RTS1_17_F02.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_17_F02_A029 5', mRNA sequence
Length = 630
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 402 tgcggaaagagttgtaggctgaggtggataaacta 436
||||||||||| ||||||||| | |||||||||||
Sbjct: 155 tgcggaaagagctgtaggctgcgatggataaacta 189
>gb|DR164052.1|DR164052 RTFE1_46_B11.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_46_B11_A029 5', mRNA sequence
Length = 834
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 402 tgcggaaagagttgtaggctgaggtggataaacta 436
||||||||||| ||||||||| | |||||||||||
Sbjct: 186 tgcggaaagagctgtaggctgcgatggataaacta 220
>gb|DR168212.1|DR168212 RTPHOS1_23_H12.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_23_H12_A029 5', mRNA sequence
Length = 600
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 402 tgcggaaagagttgtaggctgaggtggataaacta 436
||||||||||| ||||||||| | |||||||||||
Sbjct: 147 tgcggaaagagctgtaggctgcgatggataaacta 181
>gb|DR178268.1|DR178268 RTMNUT1_10_C01.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_10_C01_A029 5', mRNA sequence
Length = 719
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 402 tgcggaaagagttgtaggctgaggtggataaacta 436
||||||||||| ||||||||| | |||||||||||
Sbjct: 133 tgcggaaagagctgtaggctgcgatggataaacta 167
>gb|DR179654.1|DR179654 RTMNUT1_23_B05.g2_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_23_B05_A029 5', mRNA sequence
Length = 685
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 402 tgcggaaagagttgtaggctgaggtggataaacta 436
||||||||||| ||||||||| | |||||||||||
Sbjct: 57 tgcggaaagagctgtaggctgcgatggataaacta 91
>gb|DR387764.1|DR387764 RTHG1_24_A11.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_24_A11_A029 3', mRNA sequence
Length = 796
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 402 tgcggaaagagttgtaggctgaggtggataaacta 436
||||||||||| ||||||||| | |||||||||||
Sbjct: 647 tgcggaaagagctgtaggctgcgatggataaacta 613
>gb|DR387774.1|DR387774 RTHG1_24_B11.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_24_B11_A029 3', mRNA sequence
Length = 781
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 402 tgcggaaagagttgtaggctgaggtggataaacta 436
||||||||||| ||||||||| | |||||||||||
Sbjct: 623 tgcggaaagagctgtaggctgcgatggataaacta 589
>gb|BQ697390.1|BQ697390 NXPV_053_G01_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_053_G01 5' similar to Arabidopsis
thaliana sequence At1g09540 putative transcription
factor (MYB61) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 207
Score = 44.1 bits (22), Expect = 0.022
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 579 tggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccaca 636
|||||||||||||| || |||||||| ||||| |||||| ||||| ||||| ||||
Sbjct: 2 tggaactcgtgcattaaaaagaagcttaggcaacgaggcatagatcctaacacgcaca 59
>gb|CO164542.1|CO164542 FLD1_48_E08.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_48_E08_A029 5', mRNA sequence
Length = 862
Score = 44.1 bits (22), Expect = 0.022
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 405 ggaaagagttgtaggctgaggtggataaactatctgag 442
|||||||||||| | ||| |||||| ||||||||||||
Sbjct: 28 ggaaagagttgtcgcctgcggtggacaaactatctgag 65
>gb|CO366297.1|CO366297 RTK1_27_B09.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_27_B09_A029 3', mRNA sequence
Length = 904
Score = 44.1 bits (22), Expect = 0.022
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 405 ggaaagagttgtaggctgaggtggataaactatctgag 442
|||||||||||| | ||| |||||| ||||||||||||
Sbjct: 772 ggaaagagttgtcgcctgcggtggacaaactatctgag 735
>gb|DR167765.1|DR167765 RTPHOS1_20_H05.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_20_H05_A029 5', mRNA sequence
Length = 806
Score = 44.1 bits (22), Expect = 0.022
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 405 ggaaagagttgtaggctgaggtggataaactatctgag 442
|||||||||||| | ||| |||||| ||||||||||||
Sbjct: 110 ggaaagagttgtcgcctgcggtggacaaactatctgag 147
>gb|DR683147.1|DR683147 EST1073223 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAE70 3' end, mRNA sequence
Length = 768
Score = 42.1 bits (21), Expect = 0.087
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 408 aagagttgtaggctgaggtgg 428
|||||||||||||||||||||
Sbjct: 360 aagagttgtaggctgaggtgg 380
>gb|DT631233.1|DT631233 EST1146164 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMF647 3' end, mRNA sequence
Length = 762
Score = 42.1 bits (21), Expect = 0.087
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 408 aagagttgtaggctgaggtgg 428
|||||||||||||||||||||
Sbjct: 298 aagagttgtaggctgaggtgg 318
>gb|CO201585.1|CO201585 RTCNT2_6_F07.g1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_6_F07_A029 5', mRNA sequence
Length = 859
Score = 38.2 bits (19), Expect = 1.4
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 402 tgcggaaagagttgtaggctgaggtggataaacta 436
|||||||||||||| ||||| | |||||||||||
Sbjct: 75 tgcggaaagagttgcaggctccgatggataaacta 109
>gb|DR051127.1|DR051127 RTBOR1_27_G08.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_27_G08_A029 5', mRNA sequence
Length = 772
Score = 38.2 bits (19), Expect = 1.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 400 ggtgcggaaagagttgtag 418
|||||||||||||||||||
Sbjct: 180 ggtgcggaaagagttgtag 198
>gb|DR163874.1|DR163874 RTFE1_45_A12.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_45_A12_A029 5', mRNA sequence
Length = 896
Score = 38.2 bits (19), Expect = 1.4
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 402 tgcggaaagagttgtaggctgaggtggataaacta 436
|||||||||||||| ||||| | |||||||||||
Sbjct: 104 tgcggaaagagttgcaggctccgatggataaacta 138
>gb|DR167401.1|DR167401 RTPHOS1_18_C09.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_18_C09_A029 5', mRNA sequence
Length = 850
Score = 38.2 bits (19), Expect = 1.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 400 ggtgcggaaagagttgtag 418
|||||||||||||||||||
Sbjct: 178 ggtgcggaaagagttgtag 196
>gb|BX251080.1|BX251080 BX251080 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP045A10, mRNA sequence
Length = 672
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1817 acttttgcatatttgagt 1834
||||||||||||||||||
Sbjct: 560 acttttgcatatttgagt 543
>gb|CF671302.1|CF671302 RTCNT1_56_D10.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_56_D10_A029 3', mRNA sequence
Length = 672
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 477 gaagaagacctcatcatc 494
||||||||||||||||||
Sbjct: 563 gaagaagacctcatcatc 580
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 477 gaagaagacctcatcatc 494
||||||||||||||||||
Sbjct: 141 gaagaagacctcatcatc 158
>gb|CO162116.1|CO162116 FLD1_33_G01.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_33_G01_A029 3', mRNA sequence
Length = 765
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1817 acttttgcatatttgagt 1834
||||||||||||||||||
Sbjct: 167 acttttgcatatttgagt 150
>gb|CO166854.1|CO166854 FLD1_65_B04.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_65_B04_A029 3', mRNA sequence
Length = 907
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1817 acttttgcatatttgagt 1834
||||||||||||||||||
Sbjct: 245 acttttgcatatttgagt 228
>gb|CO166912.1|CO166912 FLD1_65_A04.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_65_A04_A029 5', mRNA sequence
Length = 601
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1817 acttttgcatatttgagt 1834
||||||||||||||||||
Sbjct: 430 acttttgcatatttgagt 413
>gb|CO166923.1|CO166923 FLD1_65_B04.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_65_B04_A029 5', mRNA sequence
Length = 813
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1817 acttttgcatatttgagt 1834
||||||||||||||||||
Sbjct: 470 acttttgcatatttgagt 453
>gb|CO169403.1|CO169403 NDL1_6_G06.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_6_G06_A029 5', mRNA sequence
Length = 734
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1174 ctagcagcagtagcagta 1191
||||||||||||||||||
Sbjct: 179 ctagcagcagtagcagta 196
>gb|CO175689.1|CO175689 NDL1_56_H01.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_56_H01_A029 3', mRNA sequence
Length = 697
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1174 ctagcagcagtagcagta 1191
||||||||||||||||||
Sbjct: 421 ctagcagcagtagcagta 404
>gb|CO198398.1|CO198398 GEO1_13_H06.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_13_H06_A029 3', mRNA sequence
Length = 220
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1452 cagcagccacagcaacag 1469
||||||||||||||||||
Sbjct: 7 cagcagccacagcaacag 24
>gb|CO412800.1|CO412800 EST843185 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAM217 5' end, mRNA sequence
Length = 908
Score = 36.2 bits (18), Expect = 5.3
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 386 cgctgggcttcaaaggtgcgga 407
|||||||||||||||| |||||
Sbjct: 852 cgctgggcttcaaaggcgcgga 831
>gb|CO369151.1|CO369151 RTK1_45_F12.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_45_F12_A029 3', mRNA sequence
Length = 731
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1817 acttttgcatatttgagt 1834
||||||||||||||||||
Sbjct: 150 acttttgcatatttgagt 133
>gb|CO369670.1|CO369670 RTK1_48_E01.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_48_E01_A029 5', mRNA sequence
Length = 565
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1174 ctagcagcagtagcagta 1191
||||||||||||||||||
Sbjct: 217 ctagcagcagtagcagta 234
>gb|CV032019.1|CV032019 RTNACL1_5_E07.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_5_E07_A029 3', mRNA sequence
Length = 730
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1817 acttttgcatatttgagt 1834
||||||||||||||||||
Sbjct: 186 acttttgcatatttgagt 203
>gb|DR015383.1|DR015383 STRS1_3_E01.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_3_E01_A034 3', mRNA sequence
Length = 879
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1817 acttttgcatatttgagt 1834
||||||||||||||||||
Sbjct: 247 acttttgcatatttgagt 230
>gb|DR015463.1|DR015463 STRS1_3_E01.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_3_E01_A034 5', mRNA sequence
Length = 653
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1817 acttttgcatatttgagt 1834
||||||||||||||||||
Sbjct: 227 acttttgcatatttgagt 210
>gb|DR022289.1|DR022289 STRS1_50_C04.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_50_C04_A034 3', mRNA sequence
Length = 887
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1817 acttttgcatatttgagt 1834
||||||||||||||||||
Sbjct: 328 acttttgcatatttgagt 345
>gb|DR024265.1|DR024265 STRS1_63_E05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_63_E05_A034 5', mRNA sequence
Length = 696
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1817 acttttgcatatttgagt 1834
||||||||||||||||||
Sbjct: 378 acttttgcatatttgagt 361
>gb|DR054764.1|DR054764 RTCA1_19_A08.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_19_A08_A029 5', mRNA sequence
Length = 745
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1770 ctttcctttctcttgaaa 1787
||||||||||||||||||
Sbjct: 31 ctttcctttctcttgaaa 14
>gb|DR078653.1|DR078653 RTFEPL1_6_B12.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_6_B12_A029 3', mRNA sequence
Length = 782
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 477 gaagaagacctcatcatc 494
||||||||||||||||||
Sbjct: 444 gaagaagacctcatcatc 461
>gb|DR090168.1|DR090168 RTAL1_13_D06.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_13_D06_A029 3', mRNA sequence
Length = 703
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 477 gaagaagacctcatcatc 494
||||||||||||||||||
Sbjct: 276 gaagaagacctcatcatc 293
>gb|DR101025.1|DR101025 STRR1_70_B06.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_70_B06_A033 3', mRNA sequence
Length = 905
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1817 acttttgcatatttgagt 1834
||||||||||||||||||
Sbjct: 292 acttttgcatatttgagt 275
>gb|DR161905.1|DR161905 RTFE1_14_D02.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_14_D02_A029 5', mRNA sequence
Length = 561
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1174 ctagcagcagtagcagta 1191
||||||||||||||||||
Sbjct: 201 ctagcagcagtagcagta 218
>gb|DR177656.1|DR177656 RTMNUT1_6_D04.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_6_D04_A029 5', mRNA sequence
Length = 770
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1174 ctagcagcagtagcagta 1191
||||||||||||||||||
Sbjct: 200 ctagcagcagtagcagta 217
>gb|DR384642.1|DR384642 RTHG1_3_C11.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_3_C11_A029 5', mRNA sequence
Length = 630
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1817 acttttgcatatttgagt 1834
||||||||||||||||||
Sbjct: 558 acttttgcatatttgagt 541
>gb|DR685654.1|DR685654 EST1075731 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAB633 3' end, mRNA sequence
Length = 786
Score = 36.2 bits (18), Expect = 5.3
Identities = 54/66 (81%)
Strand = Plus / Plus
Query: 510 ctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatc 569
||||| |||||||||||| | ||||| || || |||| || |||| |||||||| |||
Sbjct: 280 ctcggtaacaggtggtctaagattgccgcacacttgcctggacggacagataatgaaatc 339
Query: 570 aagaat 575
||||||
Sbjct: 340 aagaat 345
>gb|DR686456.1|DR686456 EST1076534 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABG25 3' end, mRNA sequence
Length = 805
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1817 acttttgcatatttgagt 1834
||||||||||||||||||
Sbjct: 580 acttttgcatatttgagt 563
>gb|DR686808.1|DR686808 EST1076886 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABK09 3' end, mRNA sequence
Length = 775
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1817 acttttgcatatttgagt 1834
||||||||||||||||||
Sbjct: 639 acttttgcatatttgagt 622
>gb|DR690479.1|DR690479 EST1080565 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACV56 3' end, mRNA sequence
Length = 891
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1817 acttttgcatatttgagt 1834
||||||||||||||||||
Sbjct: 561 acttttgcatatttgagt 544
>gb|DR691208.1|DR691208 EST1081294 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAD554 3' end, mRNA sequence
Length = 702
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1817 acttttgcatatttgagt 1834
||||||||||||||||||
Sbjct: 535 acttttgcatatttgagt 518
>gb|DR694473.1|DR694473 EST1084565 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEC94 3' end, mRNA sequence
Length = 822
Score = 36.2 bits (18), Expect = 5.3
Identities = 54/66 (81%)
Strand = Plus / Plus
Query: 510 ctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatc 569
||||| |||||||||||| | ||||| || || |||| || |||| |||||||| |||
Sbjct: 333 ctcggtaacaggtggtctaagattgccgcacacttgcctggacggacagataatgaaatc 392
Query: 570 aagaat 575
||||||
Sbjct: 393 aagaat 398
>gb|DT625989.1|DT625989 EST1157913 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMA587 5' end, mRNA sequence
Length = 922
Score = 36.2 bits (18), Expect = 5.3
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 386 cgctgggcttcaaaggtgcgga 407
|||||||||||||||| |||||
Sbjct: 816 cgctgggcttcaaaggcgcgga 795
>gb|DT626048.1|DT626048 EST1157972 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMA651 5' end, mRNA sequence
Length = 845
Score = 36.2 bits (18), Expect = 5.3
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 386 cgctgggcttcaaaggtgcgga 407
|||||||||||||||| |||||
Sbjct: 814 cgctgggcttcaaaggcgcgga 793
>gb|DT633383.1|DT633383 EST1148314 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFU34 3' end, mRNA sequence
Length = 833
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1817 acttttgcatatttgagt 1834
||||||||||||||||||
Sbjct: 588 acttttgcatatttgagt 571
>gb|DT633848.1|DT633848 EST1148779 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFZ41 3' end, mRNA sequence
Length = 843
Score = 36.2 bits (18), Expect = 5.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1817 acttttgcatatttgagt 1834
||||||||||||||||||
Sbjct: 647 acttttgcatatttgagt 630
>gb|DT638742.1|DT638742 EST1153673 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHI92 3' end, mRNA sequence
Length = 822
Score = 36.2 bits (18), Expect = 5.3
Identities = 54/66 (81%)
Strand = Plus / Plus
Query: 510 ctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatc 569
||||| |||||||||||| | ||||| || || |||| || |||| |||||||| |||
Sbjct: 341 ctcggtaacaggtggtctaagattgccgcacacttgcctggacggacagataatgaaatc 400
Query: 570 aagaat 575
||||||
Sbjct: 401 aagaat 406
Database: Pinus_nucl_with_EST.fasta
Posted date: May 2, 2006 3:25 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 288,119
Number of Sequences: 355925
Number of extensions: 288119
Number of successful extensions: 80128
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80012
Number of HSP's gapped (non-prelim): 115
length of query: 1992
length of database: 217,277,237
effective HSP length: 20
effective length of query: 1972
effective length of database: 210,158,737
effective search space: 414433029364
effective search space used: 414433029364
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)