BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAR2a06.yg.3.1
(612 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR058377.1|DR058377 RTNIT1_11_A08.g1_A029 Roots minus ni... 42 0.026
gb|CF664589.1|CF664589 RTCNT1_10_F11.g1_A029 Root control P... 34 6.4
gb|CO366803.1|CO366803 RTK1_30_E09.b1_A029 Roots minus pota... 34 6.4
gb|CO366876.1|CO366876 RTK1_30_E09.g1_A029 Roots minus pota... 34 6.4
gb|CO369097.1|CO369097 RTK1_45_A02.b1_A029 Roots minus pota... 34 6.4
gb|CV032408.1|CV032408 RTNACL1_7_H07.g2_A029 Roots plus add... 34 6.4
gb|DR050383.1|DR050383 RTBOR1_23_D03.b1_A029 Roots plus add... 34 6.4
gb|DR092315.1|DR092315 RTAL1_28_H09.b1_A029 Roots plus adde... 34 6.4
gb|DR093875.1|DR093875 STRR1_11_A02.b1_A033 Stem Response R... 34 6.4
gb|DR093941.1|DR093941 STRR1_11_A02.g1_A033 Stem Response R... 34 6.4
gb|DR687227.1|DR687227 EST1077307 Normalized pine embryo li... 34 6.4
gb|DT634211.1|DT634211 EST1149142 Normalized pine embryo li... 34 6.4
>gb|DR058377.1|DR058377 RTNIT1_11_A08.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_11_A08_A029 5', mRNA sequence
Length = 897
Score = 42.1 bits (21), Expect = 0.026
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 544 atgaaatttgctctagagaag 564
|||||||||||||||||||||
Sbjct: 425 atgaaatttgctctagagaag 445
>gb|CF664589.1|CF664589 RTCNT1_10_F11.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_10_F11_A029 5', mRNA sequence
Length = 767
Score = 34.2 bits (17), Expect = 6.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 576 ctaccagaccattacaa 592
|||||||||||||||||
Sbjct: 563 ctaccagaccattacaa 547
>gb|CO366803.1|CO366803 RTK1_30_E09.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_30_E09_A029 3', mRNA sequence
Length = 867
Score = 34.2 bits (17), Expect = 6.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 250 cagctccatcatcagca 266
|||||||||||||||||
Sbjct: 10 cagctccatcatcagca 26
>gb|CO366876.1|CO366876 RTK1_30_E09.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_30_E09_A029 5', mRNA sequence
Length = 758
Score = 34.2 bits (17), Expect = 6.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 250 cagctccatcatcagca 266
|||||||||||||||||
Sbjct: 449 cagctccatcatcagca 465
>gb|CO369097.1|CO369097 RTK1_45_A02.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_45_A02_A029 3', mRNA sequence
Length = 693
Score = 34.2 bits (17), Expect = 6.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 576 ctaccagaccattacaa 592
|||||||||||||||||
Sbjct: 304 ctaccagaccattacaa 288
>gb|CV032408.1|CV032408 RTNACL1_7_H07.g2_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_7_H07_A029 5', mRNA sequence
Length = 705
Score = 34.2 bits (17), Expect = 6.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 347 agtgttttctatggatc 363
|||||||||||||||||
Sbjct: 562 agtgttttctatggatc 546
>gb|DR050383.1|DR050383 RTBOR1_23_D03.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_23_D03_A029 3', mRNA sequence
Length = 795
Score = 34.2 bits (17), Expect = 6.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 347 agtgttttctatggatc 363
|||||||||||||||||
Sbjct: 188 agtgttttctatggatc 204
>gb|DR092315.1|DR092315 RTAL1_28_H09.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_28_H09_A029 3', mRNA sequence
Length = 538
Score = 34.2 bits (17), Expect = 6.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 250 cagctccatcatcagca 266
|||||||||||||||||
Sbjct: 34 cagctccatcatcagca 50
>gb|DR093875.1|DR093875 STRR1_11_A02.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_11_A02_A033 3', mRNA sequence
Length = 837
Score = 34.2 bits (17), Expect = 6.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 347 agtgttttctatggatc 363
|||||||||||||||||
Sbjct: 408 agtgttttctatggatc 392
>gb|DR093941.1|DR093941 STRR1_11_A02.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_11_A02_A033 5', mRNA sequence
Length = 795
Score = 34.2 bits (17), Expect = 6.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 347 agtgttttctatggatc 363
|||||||||||||||||
Sbjct: 562 agtgttttctatggatc 546
>gb|DR687227.1|DR687227 EST1077307 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABP11 3' end, mRNA sequence
Length = 747
Score = 34.2 bits (17), Expect = 6.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 347 agtgttttctatggatc 363
|||||||||||||||||
Sbjct: 498 agtgttttctatggatc 514
>gb|DT634211.1|DT634211 EST1149142 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMG351 3' end, mRNA sequence
Length = 832
Score = 34.2 bits (17), Expect = 6.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 347 agtgttttctatggatc 363
|||||||||||||||||
Sbjct: 506 agtgttttctatggatc 522
Database: Pinus_nucl_with_EST.fasta
Posted date: May 2, 2006 3:25 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 62,584
Number of Sequences: 355925
Number of extensions: 62584
Number of successful extensions: 17884
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17872
Number of HSP's gapped (non-prelim): 12
length of query: 612
length of database: 217,277,237
effective HSP length: 19
effective length of query: 593
effective length of database: 210,514,662
effective search space: 124835194566
effective search space used: 124835194566
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)