BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAN24c09.yg.2.1
(425 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY262820.1| Pinus radiata cellulose synthase (CesA10) mR... 101 2e-020
gb|CF478017.1|CF478017 RTWW3_17_B06.g1_A022 Well-watered lo... 96 1e-018
gb|CF478399.1|CF478399 RTWW3_18_G11.g1_A022 Well-watered lo... 96 1e-018
gb|CV031645.1|CV031645 RTNACL1_2_G07.g1_A029 Roots plus add... 96 1e-018
gb|AY262821.1| Pinus radiata cellulose synthase (CesA2) mRN... 96 1e-018
gb|BQ291066.1|BQ291066 NXRV055_C03_F NXRV (Nsf Xylem Root w... 92 2e-017
gb|BX784298.1|BX784298 BX784298 Pinus pinaster differenciat... 86 1e-015
gb|CO369942.1|CO369942 RTK1_55_A04.g1_A029 Roots minus pota... 66 1e-009
gb|DR017425.1|DR017425 STRS1_16_E10.b1_A034 Shoot tip pitch... 66 1e-009
gb|DR017506.1|DR017506 STRS1_16_E10.g1_A034 Shoot tip pitch... 66 1e-009
gb|DR020730.1|DR020730 STRS1_38_H10.g1_A034 Shoot tip pitch... 66 1e-009
gb|DR689610.1|DR689610 EST1079696 Normalized pine embryo li... 66 1e-009
gb|DT635390.1|DT635390 EST1150321 Normalized pine embryo li... 66 1e-009
gb|BG040950.1|BG040950 NXSI_117_A06_F NXSI (Nsf Xylem Side ... 58 3e-007
gb|BQ196805.1|BQ196805 NXLV105_E07_F NXLV (Nsf Xylem Late w... 56 1e-006
gb|BE431393.1|BE431393 NXNV_181_F12_F Nsf Xylem Normal wood... 54 5e-006
gb|CD019985.1|CD019985 NXNV008B03 Nsf Xylem Normal wood Ver... 52 2e-005
gb|DR687054.1|DR687054 EST1077132 Normalized pine embryo li... 50 7e-005
gb|DT633819.1|DT633819 EST1148750 Normalized pine embryo li... 50 7e-005
gb|DR059226.1|DR059226 RTNIT1_16_B01.g1_A029 Roots minus ni... 48 3e-004
gb|DR695127.1|DR695127 EST1085220 Normalized pine embryo li... 46 0.001
gb|BX250234.1|BX250234 BX250234 Pinus pinaster differenciat... 44 0.005
gb|BF221043.1|BF221043 NXCI_162_E11_F NXCI (Nsf Xylem Compr... 44 0.005
gb|BG673833.1|BG673833 NXPV_075_F11_F NXPV (Nsf Xylem Plani... 44 0.005
gb|CF390276.1|CF390276 RTDR2_18_A03.g1_A021 Loblolly pine r... 44 0.005
gb|DR118589.1|DR118589 RTMG1_18_A07.b1_A029 Roots minus mag... 44 0.005
dbj|BD236020.1| Materials and method for modification of pl... 44 0.005
gb|AY639654.1| Pinus radiata cellulose synthase catalytic s... 44 0.005
gb|AY789652.1| Pinus taeda cellulose synthase catalytic sub... 44 0.005
gb|BX255144.1|BX255144 BX255144 Pinus pinaster differenciat... 42 0.018
gb|BX255145.1|BX255145 BX255145 Pinus pinaster differenciat... 42 0.018
gb|BG040908.1|BG040908 NXSI_116_E11_F NXSI (Nsf Xylem Side ... 42 0.018
gb|BQ701470.1|BQ701470 NXSI_064_F10_F NXSI (Nsf Xylem Side ... 42 0.018
gb|DR014876.1|DR014876 HEAT1_52_D10.b1_A029 Root at 37 C fo... 42 0.018
gb|DR014958.1|DR014958 HEAT1_52_D10.g1_A029 Root at 37 C fo... 42 0.018
gb|DR684943.1|DR684943 EST1075020 Normalized pine embryo li... 42 0.018
gb|DT632612.1|DT632612 EST1147543 Normalized pine embryo li... 42 0.018
gb|AI812887.1|AI812887 22B3 Pine Lambda Zap Xylem library P... 40 0.071
gb|AW011234.1|AW011234 ST18D02 Pine TriplEx shoot tip libra... 40 0.071
gb|AW289623.1|AW289623 NXNV003H02F Nsf Xylem Normal wood Ve... 40 0.071
gb|AW290647.1|AW290647 NXNV044E04F Nsf Xylem Normal wood Ve... 40 0.071
gb|BX249614.1|BX249614 BX249614 Pinus pinaster differenciat... 40 0.071
gb|BX250396.1|BX250396 BX250396 Pinus pinaster differenciat... 40 0.071
gb|BX252761.1|BX252761 BX252761 Pinus pinaster differenciat... 40 0.071
gb|BX254022.1|BX254022 BX254022 Pinus pinaster differenciat... 40 0.071
gb|BX255542.1|BX255542 BX255542 Pinus pinaster differenciat... 40 0.071
gb|AW698053.1|AW698053 NXNV_072_F12_F Nsf Xylem Normal wood... 40 0.071
gb|AW784057.1|AW784057 NXNV_117_B10_F Nsf Xylem Normal wood... 40 0.071
gb|BE209203.1|BE209203 NXNV_147_C08_F Nsf Xylem Normal wood... 40 0.071
gb|BE457983.1|BE457983 NXCI_008_H12_F NXCI (Nsf Xylem Compr... 40 0.071
gb|BE656835.1|BE656835 NXCI_040_B06_F NXCI (Nsf Xylem Compr... 40 0.071
gb|BF010934.1|BF010934 NXCI_094_H06_F NXCI (Nsf Xylem Compr... 40 0.071
gb|BF220717.1|BF220717 NXCI_149_G02_F NXCI (Nsf Xylem Compr... 40 0.071
gb|BF610475.1|BF610475 NXSI_058_H08_F NXSI (Nsf Xylem Side ... 40 0.071
gb|BG039408.1|BG039408 NXSI_098_F10_F NXSI (Nsf Xylem Side ... 40 0.071
gb|BQ702475.1|BQ702475 NXSI_129_A10_F NXSI (Nsf Xylem Side ... 40 0.071
gb|BQ702504.1|BQ702504 NXSI_129_D04_F NXSI (Nsf Xylem Side ... 40 0.071
gb|CD017522.1|CD017522 NXCI_124_B01_F NXCI (Nsf Xylem Compr... 40 0.071
gb|CD027309.1|CD027309 NXNV044E04 Nsf Xylem Normal wood Ver... 40 0.071
gb|CD028231.1|CD028231 NXNV003H02 Nsf Xylem Normal wood Ver... 40 0.071
gb|CF396363.1|CF396363 RTDS2_21_F06.g1_A021 Drought-stresse... 40 0.071
gb|CF666095.1|CF666095 RTCNT1_20_E07.g1_A029 Root control P... 40 0.071
gb|CO168623.1|CO168623 NDL1_1_A02.g1_A029 Needles control P... 40 0.071
gb|CO169549.1|CO169549 NDL1_7_F09.g1_A029 Needles control P... 40 0.071
gb|CO369344.1|CO369344 RTK1_46_B01.g1_A029 Roots minus pota... 40 0.071
gb|CX646526.1|CX646526 COLD1_9_H07.g1_A029 Root cold Pinus ... 40 0.071
gb|DR054410.1|DR054410 RTCA1_17_D10.b1_A029 Roots minus cal... 40 0.071
gb|DR100267.1|DR100267 STRR1_62_H11.g1_A033 Stem Response R... 40 0.071
gb|DR110657.1|DR110657 RTS1_12_E03.b1_A029 Roots minus sulf... 40 0.071
gb|DR110744.1|DR110744 RTS1_12_E03.g1_A029 Roots minus sulf... 40 0.071
gb|DR160218.1|DR160218 RTFE1_4_D09.g1_A029 Roots minus iron... 40 0.071
gb|DT638876.1|DT638876 EST1153807 Normalized pine embryo li... 40 0.071
gb|AY789650.1| Pinus taeda cellulose synthase catalytic sub... 40 0.071
gb|AY789651.1| Pinus taeda cellulose synthase catalytic sub... 40 0.071
gb|AY262814.1| Pinus radiata cellulose synthase (CesA11) mR... 40 0.071
gb|AY262815.1| Pinus radiata cellulose synthase (CesA3) mRN... 40 0.071
gb|AY262816.1| Pinus radiata cellulose synthase (CesA5) mRN... 40 0.071
gb|AY262817.1| Pinus radiata cellulose synthase (CesA6) mRN... 40 0.071
gb|AY262818.1| Pinus radiata cellulose synthase (CesA7) mRN... 40 0.071
gb|AY262819.1| Pinus radiata cellulose synthase (CesA8) mRN... 40 0.071
gb|BE520100.1|BE520100 NXCI_016_G11_F NXCI (Nsf Xylem Compr... 38 0.28
>gb|AY262820.1| Pinus radiata cellulose synthase (CesA10) mRNA, complete cds
Length = 4428
Score = 101 bits (51), Expect = 2e-020
Identities = 84/96 (87%)
Strand = Plus / Plus
Query: 198 catttttgctacaagcatcctnnnaatgagatggagtggtgttgggattgatgattggtg 257
|||||||||||| |||| || |||| ||||||| || ||||| |||||||| |||||
Sbjct: 3399 catttttgctacgggcatactagaaatgcgatggagcggggttggcattgatgaatggtg 3458
Query: 258 gaggaatgagcagttctgggtcattggaggtgtgtc 293
||||||||||||||||||||| ||||||||||||||
Sbjct: 3459 gaggaatgagcagttctgggtgattggaggtgtgtc 3494
>gb|CF478017.1|CF478017 RTWW3_17_B06.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_17_B06_A022 5', mRNA sequence
Length = 579
Score = 95.6 bits (48), Expect = 1e-018
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 222 aatgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcat 281
|||| |||||||||| ||||| |||||||| |||||||||||||| || |||||||||||
Sbjct: 423 aatgcgatggagtggggttggtattgatgaatggtggaggaatgaacaattctgggtcat 482
Query: 282 tggaggtgtgtc 293
||||||||||||
Sbjct: 483 tggaggtgtgtc 494
>gb|CF478399.1|CF478399 RTWW3_18_G11.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_18_G11_A022 5', mRNA sequence
Length = 717
Score = 95.6 bits (48), Expect = 1e-018
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 222 aatgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcat 281
|||| |||||||||| ||||| |||||||| |||||||||||||| || |||||||||||
Sbjct: 358 aatgcgatggagtggggttggtattgatgaatggtggaggaatgaacaattctgggtcat 417
Query: 282 tggaggtgtgtc 293
||||||||||||
Sbjct: 418 tggaggtgtgtc 429
>gb|CV031645.1|CV031645 RTNACL1_2_G07.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_2_G07_A029 5', mRNA sequence
Length = 796
Score = 95.6 bits (48), Expect = 1e-018
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 222 aatgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcat 281
|||| |||||||||| ||||| |||||||| |||||||||||||| || |||||||||||
Sbjct: 187 aatgcgatggagtggggttggtattgatgaatggtggaggaatgaacaattctgggtcat 246
Query: 282 tggaggtgtgtc 293
||||||||||||
Sbjct: 247 tggaggtgtgtc 258
>gb|AY262821.1| Pinus radiata cellulose synthase (CesA2) mRNA, partial cds
Length = 3603
Score = 95.6 bits (48), Expect = 1e-018
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 222 aatgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcat 281
|||| |||||||||| ||||| |||||||| |||||||||||||| || |||||||||||
Sbjct: 2685 aatgcgatggagtggggttggtattgatgaatggtggaggaatgaacaattctgggtcat 2744
Query: 282 tggaggtgtgtc 293
||||||||||||
Sbjct: 2745 tggaggtgtgtc 2756
>gb|BQ291066.1|BQ291066 NXRV055_C03_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV055_C03 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 630
Score = 91.7 bits (46), Expect = 2e-017
Identities = 61/66 (92%)
Strand = Plus / Plus
Query: 228 atggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcattggagg 287
|||||| || ||||| |||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 20 atggagcggggttggcattgatgaatggtggaggaatgagcagttctgggtgattggagg 79
Query: 288 tgtgtc 293
||||||
Sbjct: 80 tgtgtc 85
>gb|BX784298.1|BX784298 BX784298 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 132B11 similar to Cellulose synthase, mRNA
sequence
Length = 540
Score = 85.7 bits (43), Expect = 1e-015
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 227 gatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcattggag 286
|||||||||| ||||| ||||||||||||||||| ||||||||||| ||||| ||||| |
Sbjct: 47 gatggagtggggttggtattgatgattggtggagaaatgagcagttttgggtgattggtg 106
Query: 287 gtgtgtc 293
|||||||
Sbjct: 107 gtgtgtc 113
>gb|CO369942.1|CO369942 RTK1_55_A04.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_55_A04_A029 5', mRNA sequence
Length = 695
Score = 65.9 bits (33), Expect = 1e-009
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 238 gttgggattgatgattggtggaggaatgagcagttctgggtcattggaggtgt 290
||||| |||||||| ||||||||||||||||| || ||||| |||||||||||
Sbjct: 571 gttggcattgatgaatggtggaggaatgagcaattttgggttattggaggtgt 623
>gb|DR017425.1|DR017425 STRS1_16_E10.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_16_E10_A034 3', mRNA sequence
Length = 852
Score = 65.9 bits (33), Expect = 1e-009
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 238 gttgggattgatgattggtggaggaatgagcagttctgggtcattggaggtgt 290
||||| |||||||| ||||||||||||||||| || ||||| |||||||||||
Sbjct: 110 gttggcattgatgaatggtggaggaatgagcaattttgggttattggaggtgt 162
>gb|DR017506.1|DR017506 STRS1_16_E10.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_16_E10_A034 5', mRNA sequence
Length = 730
Score = 65.9 bits (33), Expect = 1e-009
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 238 gttgggattgatgattggtggaggaatgagcagttctgggtcattggaggtgt 290
||||| |||||||| ||||||||||||||||| || ||||| |||||||||||
Sbjct: 371 gttggcattgatgaatggtggaggaatgagcaattttgggttattggaggtgt 423
>gb|DR020730.1|DR020730 STRS1_38_H10.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_38_H10_A034 5', mRNA sequence
Length = 557
Score = 65.9 bits (33), Expect = 1e-009
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 238 gttgggattgatgattggtggaggaatgagcagttctgggtcattggaggtgt 290
||||| |||||||| ||||||||||||||||| || ||||| |||||||||||
Sbjct: 445 gttggcattgatgaatggtggaggaatgagcaattttgggttattggaggtgt 497
>gb|DR689610.1|DR689610 EST1079696 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACK80 3' end, mRNA sequence
Length = 707
Score = 65.9 bits (33), Expect = 1e-009
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 238 gttgggattgatgattggtggaggaatgagcagttctgggtcattggaggtgt 290
||||| |||||||| ||||||||||||||||| || ||||| |||||||||||
Sbjct: 34 gttggcattgatgaatggtggaggaatgagcaattttgggttattggaggtgt 86
>gb|DT635390.1|DT635390 EST1150321 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGG33 3' end, mRNA sequence
Length = 761
Score = 65.9 bits (33), Expect = 1e-009
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 238 gttgggattgatgattggtggaggaatgagcagttctgggtcattggaggtgt 290
||||| |||||||| ||||||||||||||||| || ||||| |||||||||||
Sbjct: 34 gttggcattgatgaatggtggaggaatgagcaattttgggttattggaggtgt 86
>gb|BG040950.1|BG040950 NXSI_117_A06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_117_A06 5' similar to Arabidopsis thaliana
sequence At5g05170 cellulose synthase catalytic subunit
(Ath-B) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 416
Score = 58.0 bits (29), Expect = 3e-007
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 261 gaatgagcagttctgggtcattggaggtgtgtc 293
|||||||||||||||||| ||||||||||||||
Sbjct: 1 gaatgagcagttctgggtgattggaggtgtgtc 33
>gb|BQ196805.1|BQ196805 NXLV105_E07_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV105_E07 5' similar to Arabidopsis thaliana
sequence At4g32410 cellulose synthase catalytic subunit
(RSW1) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 758
Score = 56.0 bits (28), Expect = 1e-006
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 244 attgatgattggtggaggaatgagcagttctgggtcattggaggtgt 290
|||||||| ||||||||||||||| | || ||||| |||||||||||
Sbjct: 625 attgatgaatggtggaggaatgagnaattttgggttattggaggtgt 671
>gb|BE431393.1|BE431393 NXNV_181_F12_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_181_F12 5' similar to Arabidopsis thaliana
sequence At5g05170 cellulose synthase catalytic subunit
(Ath-B) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 210
Score = 54.0 bits (27), Expect = 5e-006
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 238 gttgggattgatgattggtggaggaatgagcagttctgggtcattgg 284
||||| |||||||| ||||||||||||||||| || ||||| |||||
Sbjct: 105 gttggcattgatgaatggtggaggaatgagcaattttgggttattgg 151
>gb|CD019985.1|CD019985 NXNV008B03 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV008B03 5' similar to Arabidopsis thaliana sequence
At5g05170 cellulose synthase catalytic subunit (Ath-B)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 171
Score = 52.0 bits (26), Expect = 2e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 253 tggtggaggaatgagcagttctgggtcattggaggtgt 290
||||||||||||||||| || ||||| |||||||||||
Sbjct: 3 tggtggaggaatgagcaattttgggttattggaggtgt 40
>gb|DR687054.1|DR687054 EST1077132 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABM78 3' end, mRNA sequence
Length = 740
Score = 50.1 bits (25), Expect = 7e-005
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 229 tggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcattggaggt 288
|||||||||||| |||||||| |||||||| || || || || ||||| |||||||||
Sbjct: 207 tggagtggtgttccaattgatgactggtggagaaacgaacaattttgggtgattggaggt 266
Query: 289 gtgtc 293
|||||
Sbjct: 267 gtgtc 271
Score = 40.1 bits (20), Expect = 0.071
Identities = 53/65 (81%)
Strand = Plus / Plus
Query: 337 gctggtgttgatacaagctncactnngacatcaaagggtggagatgatgacgaattctca 396
|||||||||||||||| | ||| ||||||||| | ||| |||||||| || || |||
Sbjct: 315 gctggtgttgatacaaattttactgtgacatcaaaagctggggatgatgatgatttttca 374
Query: 397 gagct 401
|||||
Sbjct: 375 gagct 379
>gb|DT633819.1|DT633819 EST1148750 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFZ11 3' end, mRNA sequence
Length = 688
Score = 50.1 bits (25), Expect = 7e-005
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 229 tggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcattggaggt 288
|||||||||||| |||||||| |||||||| || || || || ||||| |||||||||
Sbjct: 215 tggagtggtgttccaattgatgactggtggagaaacgaacaattttgggtgattggaggt 274
Query: 289 gtgtc 293
|||||
Sbjct: 275 gtgtc 279
Score = 40.1 bits (20), Expect = 0.071
Identities = 53/65 (81%)
Strand = Plus / Plus
Query: 337 gctggtgttgatacaagctncactnngacatcaaagggtggagatgatgacgaattctca 396
|||||||||||||||| | ||| ||||||||| | ||| |||||||| || || |||
Sbjct: 323 gctggtgttgatacaaattttactgtgacatcaaaagctggggatgatgatgatttttca 382
Query: 397 gagct 401
|||||
Sbjct: 383 gagct 387
>gb|DR059226.1|DR059226 RTNIT1_16_B01.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_16_B01_A029 5', mRNA sequence
Length = 237
Score = 48.1 bits (24), Expect = 3e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 227 gatggagtggtgttgggattgatgattggtggaggaatga 266
||||||||| ||||| ||||||||||||||||| |||||
Sbjct: 198 gatggagtgcggttggtattgatgattggtggagaaatga 237
>gb|DR695127.1|DR695127 EST1085220 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEK81 3' end, mRNA sequence
Length = 800
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 253 tggtggaggaatgagcagttctgggtcattggagg 287
|||||||| ||||||||||||||| | ||||||||
Sbjct: 734 tggtggagaaatgagcagttctggttgattggagg 768
>gb|BX250234.1|BX250234 BX250234 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP034A11, mRNA sequence
Length = 689
Score = 44.1 bits (22), Expect = 0.005
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 222 aatgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcat 281
|||||| |||||||| || | ||||| || |||||| | ||||| ||||||||||| ||
Sbjct: 429 aatgaggtggagtggagtgagcattgaagaatggtggcgaaatgaacagttctgggttat 488
Query: 282 tggagg 287
||||||
Sbjct: 489 tggagg 494
>gb|BF221043.1|BF221043 NXCI_162_E11_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_162_E11 5' similar to Arabidopsis
thaliana sequence At5g17420 cellulose synthase catalytic
subunit (IRX3) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 529
Score = 44.1 bits (22), Expect = 0.005
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 222 aatgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcat 281
|||||| |||||||| || | ||||| || |||||| | ||||| ||||||||||| ||
Sbjct: 195 aatgaggtggagtggagtgagcattgaagaatggtggcgaaatgaacagttctgggttat 254
Query: 282 tggagg 287
||||||
Sbjct: 255 tggagg 260
>gb|BG673833.1|BG673833 NXPV_075_F11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_075_F11 5' similar to Arabidopsis
thaliana sequence At5g17420 cellulose synthase catalytic
subunit (IRX3) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 439
Score = 44.1 bits (22), Expect = 0.005
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 222 aatgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcat 281
|||||| |||||||| || | ||||| || |||||| | ||||| ||||||||||| ||
Sbjct: 142 aatgaggtggagtggagtgagcattgaagaatggtggcgaaatgaacagttctgggttat 201
Query: 282 tggagg 287
||||||
Sbjct: 202 tggagg 207
>gb|CF390276.1|CF390276 RTDR2_18_A03.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_18_A03_A021 5', mRNA
sequence
Length = 465
Score = 44.1 bits (22), Expect = 0.005
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 222 aatgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcat 281
|||||| |||||||| || | ||||| || |||||| | ||||| ||||||||||| ||
Sbjct: 249 aatgaggtggagtggagtgagcattgaagaatggtggcgaaatgaacagttctgggttat 308
Query: 282 tggagg 287
||||||
Sbjct: 309 tggagg 314
>gb|DR118589.1|DR118589 RTMG1_18_A07.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_18_A07_A029 3', mRNA sequence
Length = 610
Score = 44.1 bits (22), Expect = 0.005
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 222 aatgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcat 281
|||||| |||||||| || | ||||| || |||||| | ||||| ||||||||||| ||
Sbjct: 146 aatgaggtggagtggagtgagcattgaagaatggtggcgaaatgaacagttctgggttat 87
Query: 282 tggagg 287
||||||
Sbjct: 86 tggagg 81
>dbj|BD236020.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 3851
Score = 44.1 bits (22), Expect = 0.005
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 222 aatgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcat 281
|||||| |||||||| || | ||||| || |||||| | ||||| ||||||||||| ||
Sbjct: 2894 aatgaggtggagtggagtgagcattgaagaatggtggcgaaatgaacagttctgggttat 2953
Query: 282 tggagg 287
||||||
Sbjct: 2954 tggagg 2959
>gb|AY639654.1| Pinus radiata cellulose synthase catalytic subunit (CesA1) mRNA,
complete cds
Length = 3911
Score = 44.1 bits (22), Expect = 0.005
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 222 aatgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcat 281
|||||| |||||||| || | ||||| || |||||| | ||||| ||||||||||| ||
Sbjct: 2910 aatgaggtggagtggagtgagcattgaagaatggtggcgaaatgaacagttctgggttat 2969
Query: 282 tggagg 287
||||||
Sbjct: 2970 tggagg 2975
>gb|AY789652.1| Pinus taeda cellulose synthase catalytic subunit (CesA3) mRNA,
complete cds
Length = 3959
Score = 44.1 bits (22), Expect = 0.005
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 222 aatgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcat 281
|||||| |||||||| || | ||||| || |||||| | ||||| ||||||||||| ||
Sbjct: 2900 aatgaggtggagtggagtgagcattgaagaatggtggcgaaatgaacagttctgggttat 2959
Query: 282 tggagg 287
||||||
Sbjct: 2960 tggagg 2965
>gb|BX255144.1|BX255144 BX255144 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP111G04, mRNA sequence
Length = 556
Score = 42.1 bits (21), Expect = 0.018
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 137 tgtttcatctgctgcagctga 157
|||||||||||||||||||||
Sbjct: 206 tgtttcatctgctgcagctga 186
>gb|BX255145.1|BX255145 BX255145 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP111G05, mRNA sequence
Length = 599
Score = 42.1 bits (21), Expect = 0.018
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 137 tgtttcatctgctgcagctga 157
|||||||||||||||||||||
Sbjct: 206 tgtttcatctgctgcagctga 186
>gb|BG040908.1|BG040908 NXSI_116_E11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_116_E11 5' similar to Arabidopsis thaliana
sequence At4g33270 WD-repeat protein -like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 543
Score = 42.1 bits (21), Expect = 0.018
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 137 tgtttcatctgctgcagctga 157
|||||||||||||||||||||
Sbjct: 208 tgtttcatctgctgcagctga 188
>gb|BQ701470.1|BQ701470 NXSI_064_F10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_064_F10 5' similar to Arabidopsis thaliana
sequence At4g33260 WD-repeat protein -like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 339
Score = 42.1 bits (21), Expect = 0.018
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 137 tgtttcatctgctgcagctga 157
|||||||||||||||||||||
Sbjct: 205 tgtttcatctgctgcagctga 185
>gb|DR014876.1|DR014876 HEAT1_52_D10.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_52_D10_A029 3', mRNA sequence
Length = 892
Score = 42.1 bits (21), Expect = 0.018
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 137 tgtttcatctgctgcagctga 157
|||||||||||||||||||||
Sbjct: 69 tgtttcatctgctgcagctga 49
>gb|DR014958.1|DR014958 HEAT1_52_D10.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_52_D10_A029 5', mRNA sequence
Length = 851
Score = 42.1 bits (21), Expect = 0.018
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 137 tgtttcatctgctgcagctga 157
|||||||||||||||||||||
Sbjct: 297 tgtttcatctgctgcagctga 277
>gb|DR684943.1|DR684943 EST1075020 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAY38 3' end, mRNA sequence
Length = 859
Score = 42.1 bits (21), Expect = 0.018
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 229 tggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcattggaggt 288
|||||||||||| |||||||| ||||||| || || || || ||||| |||||||||
Sbjct: 112 tggagtggtgttccaattgatgacaggtggagaaacgaacaattttgggtgattggaggt 171
Query: 289 gtgtc 293
|||||
Sbjct: 172 gtgtc 176
Score = 40.1 bits (20), Expect = 0.071
Identities = 53/65 (81%)
Strand = Plus / Plus
Query: 337 gctggtgttgatacaagctncactnngacatcaaagggtggagatgatgacgaattctca 396
|||||||||||||||| | ||| ||||||||| | ||| |||||||| || || |||
Sbjct: 220 gctggtgttgatacaaattttactgtgacatcaaaagctggggatgatgatgatttttca 279
Query: 397 gagct 401
|||||
Sbjct: 280 gagct 284
>gb|DT632612.1|DT632612 EST1147543 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFL85 3' end, mRNA sequence
Length = 771
Score = 42.1 bits (21), Expect = 0.018
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 229 tggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcattggaggt 288
|||||||||||| |||||||| ||||||| || || || || ||||| |||||||||
Sbjct: 120 tggagtggtgttccaattgatgacaggtggagaaacgaacaattttgggtgattggaggt 179
Query: 289 gtgtc 293
|||||
Sbjct: 180 gtgtc 184
Score = 40.1 bits (20), Expect = 0.071
Identities = 53/65 (81%)
Strand = Plus / Plus
Query: 337 gctggtgttgatacaagctncactnngacatcaaagggtggagatgatgacgaattctca 396
|||||||||||||||| | ||| ||||||||| | ||| |||||||| || || |||
Sbjct: 228 gctggtgttgatacaaattttactgtgacatcaaaagctggggatgatgatgatttttca 287
Query: 397 gagct 401
|||||
Sbjct: 288 gagct 292
>gb|AI812887.1|AI812887 22B3 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 399
Score = 40.1 bits (20), Expect = 0.071
Identities = 53/64 (82%)
Strand = Plus / Plus
Query: 224 tgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcattg 283
||||||||||||| || | || || || ||||||||||| || ||||| ||||| ||||
Sbjct: 92 tgagatggagtggagtgagcatcgaagaatggtggaggaacgaacagttttgggtgattg 151
Query: 284 gagg 287
||||
Sbjct: 152 gagg 155
>gb|AW011234.1|AW011234 ST18D02 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST18D02, mRNA sequence
Length = 599
Score = 40.1 bits (20), Expect = 0.071
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 268 cagttctgggtcattggagg 287
||||||||||||||||||||
Sbjct: 499 cagttctgggtcattggagg 518
>gb|AW289623.1|AW289623 NXNV003H02F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV003H02 5', mRNA sequence
Length = 508
Score = 40.1 bits (20), Expect = 0.071
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 268 cagttctgggtcattggagg 287
||||||||||||||||||||
Sbjct: 246 cagttctgggtcattggagg 265
>gb|AW290647.1|AW290647 NXNV044E04F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV044E04 5', mRNA sequence
Length = 327
Score = 40.1 bits (20), Expect = 0.071
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 244 attgatgattggtggaggaatgagcagttctgggtcattggagg 287
||||| || |||||| | ||||| ||||||||||| ||||||||
Sbjct: 4 attgaagaatggtggcgaaatgaacagttctgggttattggagg 47
>gb|BX249614.1|BX249614 BX249614 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP026B12, mRNA sequence
Length = 685
Score = 40.1 bits (20), Expect = 0.071
Identities = 53/64 (82%)
Strand = Plus / Plus
Query: 224 tgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcattg 283
||||||||||||| || | || || || ||||||||||| || ||||| ||||| ||||
Sbjct: 263 tgagatggagtggagtaagcatcgaagaatggtggaggaacgaacagttttgggtgattg 322
Query: 284 gagg 287
||||
Sbjct: 323 gagg 326
>gb|BX250396.1|BX250396 BX250396 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP036D07 similar to Cellulose synthase
catalytic subunit, mRNA sequence
Length = 585
Score = 40.1 bits (20), Expect = 0.071
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 268 cagttctgggtcattggagg 287
||||||||||||||||||||
Sbjct: 357 cagttctgggtcattggagg 376
>gb|BX252761.1|BX252761 BX252761 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP070C12 similar to Cellulose synthase
catalytic subunit, mRNA sequence
Length = 650
Score = 40.1 bits (20), Expect = 0.071
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 268 cagttctgggtcattggagg 287
||||||||||||||||||||
Sbjct: 60 cagttctgggtcattggagg 79
>gb|BX254022.1|BX254022 BX254022 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP092C09, mRNA sequence
Length = 690
Score = 40.1 bits (20), Expect = 0.071
Identities = 53/64 (82%)
Strand = Plus / Plus
Query: 224 tgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcattg 283
||||||||||||| || | || || || ||||||||||| || ||||| ||||| ||||
Sbjct: 212 tgagatggagtggagtaagcatcgaagaatggtggaggaacgaacagttttgggtgattg 271
Query: 284 gagg 287
||||
Sbjct: 272 gagg 275
>gb|BX255542.1|BX255542 BX255542 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP007A04 similar to Cellulose synthase
catalytic subunit, mRNA sequence
Length = 696
Score = 40.1 bits (20), Expect = 0.071
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 268 cagttctgggtcattggagg 287
||||||||||||||||||||
Sbjct: 432 cagttctgggtcattggagg 451
>gb|AW698053.1|AW698053 NXNV_072_F12_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_072_F12 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 386
Score = 40.1 bits (20), Expect = 0.071
Identities = 53/64 (82%)
Strand = Plus / Plus
Query: 224 tgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcattg 283
||||||||||||| || | || || || ||||||||||| || ||||| ||||| ||||
Sbjct: 91 tgagatggagtggagtgagcatcgaagaatggtggaggaacgaacagttttgggtgattg 150
Query: 284 gagg 287
||||
Sbjct: 151 gagg 154
>gb|AW784057.1|AW784057 NXNV_117_B10_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_117_B10 5' similar to Arabidopsis thaliana
sequence At5g44030 cellulose synthase catalytic
subunit-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 528
Score = 40.1 bits (20), Expect = 0.071
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 268 cagttctgggtcattggagg 287
||||||||||||||||||||
Sbjct: 469 cagttctgggtcattggagg 488
>gb|BE209203.1|BE209203 NXNV_147_C08_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_147_C08 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 516
Score = 40.1 bits (20), Expect = 0.071
Identities = 53/64 (82%)
Strand = Plus / Plus
Query: 224 tgagatggagtggtgttgggattgatgattggtggaggaatgagcagttctgggtcattg 283
||||||||||||| || | || || || ||||||||||| || ||||| ||||| ||||
Sbjct: 91 tgagatggagtggagtgagcatcgaagaatggtggaggaacgaacagttttgggtgattg 150
Query: 284 gagg 287
||||
Sbjct: 151 gagg 154
>gb|BE457983.1|BE457983 NXCI_008_H12_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_008_H12 5' similar to Arabidopsis
thaliana sequence At5g44030 cellulose synthase catalytic
subunit-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 438
Score = 40.1 bits (20), Expect = 0.071
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 268 cagttctgggtcattggagg 287
||||||||||||||||||||
Sbjct: 379 cagttctgggtcattggagg 398
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 55,873
Number of Sequences: 355925
Number of extensions: 55873
Number of successful extensions: 15400
Number of sequences better than 0.5: 82
Number of HSP's better than 0.5 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15266
Number of HSP's gapped (non-prelim): 115
length of query: 425
length of database: 217,277,237
effective HSP length: 18
effective length of query: 407
effective length of database: 210,870,587
effective search space: 85824328909
effective search space used: 85824328909
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)