BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QAI15h08.yg.2.1
         (557 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DR160955.1|DR160955  RTFE1_9_A12.b1_A029 Roots minus iron...    44   0.006
gb|DR050684.1|DR050684  RTBOR1_25_C04.b1_A029 Roots plus add...    38   0.37 
gb|DR051158.1|DR051158  RTBOR1_28_C04.b1_A029 Roots plus add...    38   0.37 

>gb|DR160955.1|DR160955 RTFE1_9_A12.b1_A029 Roots minus iron Pinus taeda cDNA clone
           RTFE1_9_A12_A029 3', mRNA sequence
          Length = 741

 Score = 44.1 bits (22), Expect = 0.006
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 190 tcgaaatgtttgtgacatcata 211
           ||||||||||||||||||||||
Sbjct: 350 tcgaaatgtttgtgacatcata 329



>gb|DR050684.1|DR050684 RTBOR1_25_C04.b1_A029 Roots plus added boron Pinus taeda cDNA clone
           RTBOR1_25_C04_A029 3', mRNA sequence
          Length = 896

 Score = 38.2 bits (19), Expect = 0.37
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 439 ttgacctcaaaatattctc 457
           |||||||||||||||||||
Sbjct: 31  ttgacctcaaaatattctc 49



>gb|DR051158.1|DR051158 RTBOR1_28_C04.b1_A029 Roots plus added boron Pinus taeda cDNA clone
           RTBOR1_28_C04_A029 3', mRNA sequence
          Length = 877

 Score = 38.2 bits (19), Expect = 0.37
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 439 ttgacctcaaaatattctc 457
           |||||||||||||||||||
Sbjct: 12  ttgacctcaaaatattctc 30



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 60,241
Number of Sequences: 355925
Number of extensions: 60241
Number of successful extensions: 15359
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15350
Number of HSP's gapped (non-prelim): 9
length of query: 557
length of database: 217,277,237
effective HSP length: 19
effective length of query: 538
effective length of database: 210,514,662
effective search space: 113256888156
effective search space used: 113256888156
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)