BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF41c07.yg.2.1
(691 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR388038.1|DR388038 RTHG1_25_F10.g1_A029 Roots plus adde... 96 2e-018
gb|BQ702515.1|BQ702515 NXSI_129_E04_F NXSI (Nsf Xylem Side ... 40 0.12
gb|CV036228.1|CV036228 RTNACL1_57_D09.g1_A029 Roots plus ad... 38 0.46
>gb|DR388038.1|DR388038 RTHG1_25_F10.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_25_F10_A029 5', mRNA sequence
Length = 753
Score = 95.6 bits (48), Expect = 2e-018
Identities = 180/224 (80%)
Strand = Plus / Minus
Query: 39 gcaactttcccctcaaatagtgcaatttggttcaagccaacatcacgccctttccccacc 98
||||||||||||||||| | ||||| || || | |||||||| || ||||| ||||||
Sbjct: 236 gcaactttcccctcaaacatcgcaatctgattaagtccaacatctcgaccttttcccacc 177
Query: 99 tggatatattcatggtgtgtgatgttcccttggcgcaaagtcgaattgaacccggcatat 158
|| || |||||||| || ||||| || ||||| || || || || || ||||| |||||
Sbjct: 176 tgaatgtattcatgatgcgtgatatttccttgccgtaatgtggagttaaaccctgcatag 117
Query: 159 atatcttcgcttatattaatcactcgagacgccttgctaatgccacctcgggttatgtga 218
|||||||| ||||||||||| | || || |||||||| ||||| |||| || ||||||
Sbjct: 116 atatcttcacttatattaataatacgtgatgccttgcttatgcctcctcttgtgatgtga 57
Query: 219 aatatccgatcaaaaacatcaggatgtccatagtgcattcgaac 262
|| || | ||||||||||| || || ||||||||||| |||||
Sbjct: 56 aaaattctgtcaaaaacatctgggtgaccatagtgcatacgaac 13
>gb|BQ702515.1|BQ702515 NXSI_129_E04_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_129_E04 5' similar to Arabidopsis thaliana
sequence At5g13000 callose synthase catalytic subunit
-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 611
Score = 40.1 bits (20), Expect = 0.12
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 294 gtaacaaaactagtctcctgtttcgacataaa 325
||||||||||||||||| || || ||||||||
Sbjct: 83 gtaacaaaactagtctcttgatttgacataaa 52
>gb|CV036228.1|CV036228 RTNACL1_57_D09.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_57_D09_A029 5', mRNA sequence
Length = 520
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 422 ttcttcaagtaaatttctc 440
|||||||||||||||||||
Sbjct: 341 ttcttcaagtaaatttctc 323
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 71,223
Number of Sequences: 355925
Number of extensions: 71223
Number of successful extensions: 17066
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17062
Number of HSP's gapped (non-prelim): 3
length of query: 691
length of database: 217,277,237
effective HSP length: 19
effective length of query: 672
effective length of database: 210,514,662
effective search space: 141465852864
effective search space used: 141465852864
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)