BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF36h01.yg.2.1
(689 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO366303.1|CO366303 RTK1_27_C03.b1_A029 Roots minus pota... 40 0.12
gb|CO366384.1|CO366384 RTK1_27_C03.g1_A029 Roots minus pota... 40 0.12
gb|BX255589.1|BX255589 BX255589 Pinus pinaster differenciat... 38 0.46
gb|AW870019.1|AW870019 NXNV_123_B02_F Nsf Xylem Normal wood... 38 0.46
gb|BQ699769.1|BQ699769 NXRV128_G04_F NXRV (Nsf Xylem Root w... 38 0.46
gb|CF479037.1|CF479037 RTWW3_21_G11.g1_A022 Well-watered lo... 38 0.46
gb|CF479877.1|CF479877 RTWW3_12_D09.g1_A022 Well-watered lo... 38 0.46
gb|BX679935.1|BX679935 BX679935 RS Pinus pinaster cDNA clon... 38 0.46
gb|DR078499.1|DR078499 RTFEPL1_5_C10.b1_A029 Roots plus add... 38 0.46
gb|DR096991.1|DR096991 STRR1_31_E11.g1_A033 Stem Response R... 38 0.46
gb|DR119504.1|DR119504 RTMG1_23_E02.g1_A029 Roots minus mag... 38 0.46
gb|BV079723.1| Pp_Korrigan Pinus pinaster megagametophytes ... 38 0.46
>gb|CO366303.1|CO366303 RTK1_27_C03.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_27_C03_A029 3', mRNA sequence
Length = 819
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 24 tcaagatagtcgctgtataa 43
||||||||||||||||||||
Sbjct: 42 tcaagatagtcgctgtataa 23
>gb|CO366384.1|CO366384 RTK1_27_C03.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_27_C03_A029 5', mRNA sequence
Length = 755
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 24 tcaagatagtcgctgtataa 43
||||||||||||||||||||
Sbjct: 240 tcaagatagtcgctgtataa 221
>gb|BX255589.1|BX255589 BX255589 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP007E03 similar to ENDOGLUCANASE PRECURSOR,
mRNA sequence
Length = 693
Score = 38.2 bits (19), Expect = 0.46
Identities = 34/39 (87%)
Strand = Plus / Minus
Query: 81 ggttgaggccttccatggttgagctgtattaatcctcct 119
||||| |||||||||||||| ||||| || || ||||||
Sbjct: 172 ggttggggccttccatggttcagctgaatcaaacctcct 134
>gb|AW870019.1|AW870019 NXNV_123_B02_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_123_B02 5' similar to Arabidopsis thaliana
sequence At5g49720 cellulase homolog OR16pep precursor
(pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 569
Score = 38.2 bits (19), Expect = 0.46
Identities = 34/39 (87%)
Strand = Plus / Minus
Query: 81 ggttgaggccttccatggttgagctgtattaatcctcct 119
||||| |||||||||||||| ||||| || || ||||||
Sbjct: 238 ggttggggccttccatggttcagctgaatcaaacctcct 200
>gb|BQ699769.1|BQ699769 NXRV128_G04_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV128_G04 5' similar to Arabidopsis thaliana
sequence At5g49720 cellulase homolog OR16pep precursor
(pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 512
Score = 38.2 bits (19), Expect = 0.46
Identities = 34/39 (87%)
Strand = Plus / Minus
Query: 81 ggttgaggccttccatggttgagctgtattaatcctcct 119
||||| |||||||||||||| ||||| || || ||||||
Sbjct: 78 ggttggggccttccatggttcagctgaatcaaacctcct 40
>gb|CF479037.1|CF479037 RTWW3_21_G11.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_21_G11_A022 5', mRNA sequence
Length = 699
Score = 38.2 bits (19), Expect = 0.46
Identities = 34/39 (87%)
Strand = Plus / Minus
Query: 81 ggttgaggccttccatggttgagctgtattaatcctcct 119
||||| |||||||||||||| ||||| || || ||||||
Sbjct: 384 ggttggggccttccatggttcagctgaatcaaacctcct 346
>gb|CF479877.1|CF479877 RTWW3_12_D09.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_12_D09_A022 5', mRNA sequence
Length = 700
Score = 38.2 bits (19), Expect = 0.46
Identities = 34/39 (87%)
Strand = Plus / Minus
Query: 81 ggttgaggccttccatggttgagctgtattaatcctcct 119
||||| |||||||||||||| ||||| || || ||||||
Sbjct: 317 ggttggggccttccatggttcagctgaatcaaacctcct 279
>gb|BX679935.1|BX679935 BX679935 RS Pinus pinaster cDNA clone RS36F1, mRNA sequence
Length = 620
Score = 38.2 bits (19), Expect = 0.46
Identities = 34/39 (87%)
Strand = Plus / Minus
Query: 81 ggttgaggccttccatggttgagctgtattaatcctcct 119
||||| |||||||||||||| ||||| || || ||||||
Sbjct: 371 ggttggggccttccatggttcagctgaatcaaacctcct 333
>gb|DR078499.1|DR078499 RTFEPL1_5_C10.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_5_C10_A029 3', mRNA sequence
Length = 779
Score = 38.2 bits (19), Expect = 0.46
Identities = 34/39 (87%)
Strand = Plus / Plus
Query: 81 ggttgaggccttccatggttgagctgtattaatcctcct 119
||||| |||||||||||||| ||||| || || ||||||
Sbjct: 723 ggttggggccttccatggttcagctgaatcaaacctcct 761
>gb|DR096991.1|DR096991 STRR1_31_E11.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_31_E11_A033 5', mRNA sequence
Length = 796
Score = 38.2 bits (19), Expect = 0.46
Identities = 34/39 (87%)
Strand = Plus / Minus
Query: 81 ggttgaggccttccatggttgagctgtattaatcctcct 119
||||| |||||||||||||| ||||| || || ||||||
Sbjct: 72 ggttggggccttccatggttcagctgaatcaaacctcct 34
>gb|DR119504.1|DR119504 RTMG1_23_E02.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_23_E02_A029 5', mRNA sequence
Length = 805
Score = 38.2 bits (19), Expect = 0.46
Identities = 34/39 (87%)
Strand = Plus / Minus
Query: 81 ggttgaggccttccatggttgagctgtattaatcctcct 119
||||| |||||||||||||| ||||| || || ||||||
Sbjct: 519 ggttggggccttccatggttcagctgaatcaaacctcct 481
>gb|BV079723.1| Pp_Korrigan Pinus pinaster megagametophytes Pinus pinaster STS
genomic, sequence tagged site
Length = 937
Score = 38.2 bits (19), Expect = 0.46
Identities = 34/39 (87%)
Strand = Plus / Minus
Query: 81 ggttgaggccttccatggttgagctgtattaatcctcct 119
||||| |||||||||||||| ||||| || || ||||||
Sbjct: 424 ggttggggccttccatggttcagctgaatcaaacctcct 386
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 53,579
Number of Sequences: 355925
Number of extensions: 53579
Number of successful extensions: 14691
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14679
Number of HSP's gapped (non-prelim): 12
length of query: 689
length of database: 217,277,237
effective HSP length: 19
effective length of query: 670
effective length of database: 210,514,662
effective search space: 141044823540
effective search space used: 141044823540
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)