BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF1g01.yg.2.1
(335 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR388038.1|DR388038 RTHG1_25_F10.g1_A029 Roots plus adde... 72 2e-011
>gb|DR388038.1|DR388038 RTHG1_25_F10.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_25_F10_A029 5', mRNA sequence
Length = 753
Score = 71.9 bits (36), Expect = 2e-011
Identities = 114/140 (81%)
Strand = Plus / Minus
Query: 39 gcaactttcccctcaaatagtgcaatttggttcaagccaacatcacgccctttccccacc 98
||||||||||||||||| | ||||| || || | |||||||| || ||||| ||||||
Sbjct: 236 gcaactttcccctcaaacatcgcaatctgattaagtccaacatctcgaccttttcccacc 177
Query: 99 tggatatattcatggtgtgtgatgttcccttggcgcaaagtcgaattgaacccggcatat 158
|| || |||||||| || ||||| || ||||| || || || || || ||||| |||||
Sbjct: 176 tgaatgtattcatgatgcgtgatatttccttgccgtaatgtggagttaaaccctgcatag 117
Query: 159 atatcttcgcttatattaat 178
|||||||| |||||||||||
Sbjct: 116 atatcttcacttatattaat 97
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 25,657
Number of Sequences: 355925
Number of extensions: 25657
Number of successful extensions: 5825
Number of sequences better than 0.5: 1
Number of HSP's better than 0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5823
Number of HSP's gapped (non-prelim): 1
length of query: 335
length of database: 217,277,237
effective HSP length: 18
effective length of query: 317
effective length of database: 210,870,587
effective search space: 66845976079
effective search space used: 66845976079
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)