BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF18e02.yg.3.1
(315 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF665534.1|CF665534 RTCNT1_16_D01.g1_A029 Root control P... 40 0.052
gb|CO370082.1|CO370082 RTK1_65_H06.b1_A029 Roots minus pota... 40 0.052
gb|DR014556.1|DR014556 HEAT1_50_E08.b1_A029 Root at 37 C fo... 40 0.052
gb|DR014638.1|DR014638 HEAT1_50_E08.g1_A029 Root at 37 C fo... 40 0.052
gb|DR050772.1|DR050772 RTBOR1_25_C10.g1_A029 Roots plus add... 40 0.052
gb|DR167360.1|DR167360 RTPHOS1_18_G10.b1_A029 Roots minus p... 38 0.20
gb|BI202850.1|BI202850 NXPV_091_D07_F NXPV (Nsf Xylem Plani... 36 0.81
gb|CO170268.1|CO170268 NDL1_12_G07.g1_A029 Needles control ... 36 0.81
gb|CO172772.1|CO172772 NDL1_31_G01.g1_A029 Needles control ... 36 0.81
gb|DR092421.1|DR092421 STRR1_1_G02.b1_A033 Stem Response Re... 36 0.81
gb|DR097874.1|DR097874 STRR1_37_D04.g1_A033 Stem Response R... 36 0.81
gb|DR099658.1|DR099658 STRR1_57_E02.b1_A033 Stem Response R... 36 0.81
gb|DR099702.1|DR099702 STRR1_57_E02.g1_A033 Stem Response R... 36 0.81
gb|DR682452.1|DR682452 EST1072527 Normalized pine embryo li... 36 0.81
gb|CF388133.1|CF388133 RTDR2_1_B06.b1_A021 Loblolly pine ro... 34 3.2
gb|CO171054.1|CO171054 NDL1_18_E08.g1_A029 Needles control ... 34 3.2
gb|CO366610.1|CO366610 RTK1_28_H10.g1_A029 Roots minus pota... 34 3.2
gb|CX646698.1|CX646698 COLD1_11_A07.b1_A029 Root cold Pinus... 34 3.2
gb|CX646905.1|CX646905 COLD1_12_F08.b1_A029 Root cold Pinus... 34 3.2
gb|DN626948.1|DN626948 EST977764 Subtracted pine embryo lib... 34 3.2
gb|DN631095.1|DN631095 EST981911 Subtracted pine embryo lib... 34 3.2
gb|DN632764.1|DN632764 EST983580 Subtracted pine embryo lib... 34 3.2
gb|DN633629.1|DN633629 EST984445 Subtracted pine embryo lib... 34 3.2
gb|DR071858.1|DR071858 RTDK1_22_B10.g1_A029 Roots, dark Pin... 34 3.2
gb|DR168140.1|DR168140 RTPHOS1_23_A10.g1_A029 Roots minus p... 34 3.2
gb|DT629843.1|DT629843 EST1154255 Subtracted pine embryo li... 34 3.2
gb|DT630220.1|DT630220 EST1154632 Subtracted pine embryo li... 34 3.2
>gb|CF665534.1|CF665534 RTCNT1_16_D01.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_16_D01_A029 5', mRNA sequence
Length = 441
Score = 40.1 bits (20), Expect = 0.052
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 gcaaattgttgctcctggtg 30
||||||||||||||||||||
Sbjct: 47 gcaaattgttgctcctggtg 66
>gb|CO370082.1|CO370082 RTK1_65_H06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_65_H06_A029 3', mRNA sequence
Length = 723
Score = 40.1 bits (20), Expect = 0.052
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 11 gcaaattgttgctcctggtg 30
||||||||||||||||||||
Sbjct: 432 gcaaattgttgctcctggtg 413
>gb|DR014556.1|DR014556 HEAT1_50_E08.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA
clone HEAT1_50_E08_A029 3', mRNA sequence
Length = 869
Score = 40.1 bits (20), Expect = 0.052
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 11 gcaaattgttgctcctggtg 30
||||||||||||||||||||
Sbjct: 73 gcaaattgttgctcctggtg 54
>gb|DR014638.1|DR014638 HEAT1_50_E08.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_50_E08_A029 5', mRNA sequence
Length = 881
Score = 40.1 bits (20), Expect = 0.052
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 11 gcaaattgttgctcctggtg 30
||||||||||||||||||||
Sbjct: 878 gcaaattgttgctcctggtg 859
>gb|DR050772.1|DR050772 RTBOR1_25_C10.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_25_C10_A029 5', mRNA sequence
Length = 883
Score = 40.1 bits (20), Expect = 0.052
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 gcaaattgttgctcctggtg 30
||||||||||||||||||||
Sbjct: 325 gcaaattgttgctcctggtg 344
>gb|DR167360.1|DR167360 RTPHOS1_18_G10.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_18_G10_A029 3', mRNA sequence
Length = 737
Score = 38.2 bits (19), Expect = 0.20
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 297 ggttctaattttcaggttt 315
|||||||||||||||||||
Sbjct: 109 ggttctaattttcaggttt 91
>gb|BI202850.1|BI202850 NXPV_091_D07_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_091_D07 5' similar to Arabidopsis
thaliana sequence At1g70500 putative polygalacturonase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 537
Score = 36.2 bits (18), Expect = 0.81
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 13 aaattgttgctcctggtg 30
||||||||||||||||||
Sbjct: 187 aaattgttgctcctggtg 204
>gb|CO170268.1|CO170268 NDL1_12_G07.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_12_G07_A029 5', mRNA sequence
Length = 555
Score = 36.2 bits (18), Expect = 0.81
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 13 aaattgttgctcctggtg 30
||||||||||||||||||
Sbjct: 493 aaattgttgctcctggtg 476
>gb|CO172772.1|CO172772 NDL1_31_G01.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_31_G01_A029 5', mRNA sequence
Length = 695
Score = 36.2 bits (18), Expect = 0.81
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 13 aaattgttgctcctggtg 30
||||||||||||||||||
Sbjct: 377 aaattgttgctcctggtg 394
>gb|DR092421.1|DR092421 STRR1_1_G02.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_1_G02_A033 3', mRNA sequence
Length = 860
Score = 36.2 bits (18), Expect = 0.81
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 13 aaattgttgctcctggtg 30
||||||||||||||||||
Sbjct: 102 aaattgttgctcctggtg 119
>gb|DR097874.1|DR097874 STRR1_37_D04.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_37_D04_A033 5', mRNA sequence
Length = 695
Score = 36.2 bits (18), Expect = 0.81
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 13 aaattgttgctcctggtg 30
||||||||||||||||||
Sbjct: 142 aaattgttgctcctggtg 159
>gb|DR099658.1|DR099658 STRR1_57_E02.b1_A033 Stem Response Resistant Pinus taeda cDNA
clone STRR1_57_E02_A033 3', mRNA sequence
Length = 768
Score = 36.2 bits (18), Expect = 0.81
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 13 aaattgttgctcctggtg 30
||||||||||||||||||
Sbjct: 78 aaattgttgctcctggtg 95
>gb|DR099702.1|DR099702 STRR1_57_E02.g1_A033 Stem Response Resistant Pinus taeda cDNA
clone STRR1_57_E02_A033 5', mRNA sequence
Length = 546
Score = 36.2 bits (18), Expect = 0.81
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 13 aaattgttgctcctggtg 30
||||||||||||||||||
Sbjct: 51 aaattgttgctcctggtg 68
>gb|DR682452.1|DR682452 EST1072527 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAA992, mRNA sequence
Length = 841
Score = 36.2 bits (18), Expect = 0.81
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 13 aaattgttgctcctggtg 30
||||||||||||||||||
Sbjct: 650 aaattgttgctcctggtg 633
>gb|CF388133.1|CF388133 RTDR2_1_B06.b1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_1_B06_A021 3', mRNA
sequence
Length = 739
Score = 34.2 bits (17), Expect = 3.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 68 atatttttccattgatt 84
|||||||||||||||||
Sbjct: 449 atatttttccattgatt 465
>gb|CO171054.1|CO171054 NDL1_18_E08.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_18_E08_A029 5', mRNA sequence
Length = 741
Score = 34.2 bits (17), Expect = 3.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 170 ttctgttactgtgagga 186
|||||||||||||||||
Sbjct: 620 ttctgttactgtgagga 636
>gb|CO366610.1|CO366610 RTK1_28_H10.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_28_H10_A029 5', mRNA sequence
Length = 822
Score = 34.2 bits (17), Expect = 3.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 73 tttccattgattcatat 89
|||||||||||||||||
Sbjct: 795 tttccattgattcatat 811
>gb|CX646698.1|CX646698 COLD1_11_A07.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_11_A07_A029 3', mRNA sequence
Length = 512
Score = 34.2 bits (17), Expect = 3.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 68 atatttttccattgatt 84
|||||||||||||||||
Sbjct: 471 atatttttccattgatt 487
>gb|CX646905.1|CX646905 COLD1_12_F08.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_12_F08_A029 3', mRNA sequence
Length = 748
Score = 34.2 bits (17), Expect = 3.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 195 aaagatgctgaggaaaa 211
|||||||||||||||||
Sbjct: 301 aaagatgctgaggaaaa 317
>gb|DN626948.1|DN626948 EST977764 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAAB94, mRNA sequence
Length = 712
Score = 34.2 bits (17), Expect = 3.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 201 gctgaggaaaagaaagc 217
|||||||||||||||||
Sbjct: 379 gctgaggaaaagaaagc 395
>gb|DN631095.1|DN631095 EST981911 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAC425, mRNA sequence
Length = 713
Score = 34.2 bits (17), Expect = 3.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 201 gctgaggaaaagaaagc 217
|||||||||||||||||
Sbjct: 379 gctgaggaaaagaaagc 395
>gb|DN632764.1|DN632764 EST983580 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTACU61, mRNA sequence
Length = 735
Score = 34.2 bits (17), Expect = 3.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 201 gctgaggaaaagaaagc 217
|||||||||||||||||
Sbjct: 379 gctgaggaaaagaaagc 395
>gb|DN633629.1|DN633629 EST984445 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAD954, mRNA sequence
Length = 662
Score = 34.2 bits (17), Expect = 3.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 201 gctgaggaaaagaaagc 217
|||||||||||||||||
Sbjct: 270 gctgaggaaaagaaagc 286
>gb|DR071858.1|DR071858 RTDK1_22_B10.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_22_B10_A029 5', mRNA sequence
Length = 688
Score = 34.2 bits (17), Expect = 3.2
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 195 aaagatgctgaggaaaa 211
|||||||||||||||||
Sbjct: 347 aaagatgctgaggaaaa 331
>gb|DR168140.1|DR168140 RTPHOS1_23_A10.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_23_A10_A029 5', mRNA sequence
Length = 688
Score = 34.2 bits (17), Expect = 3.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 195 aaagatgctgaggaaaa 211
|||||||||||||||||
Sbjct: 630 aaagatgctgaggaaaa 646
>gb|DT629843.1|DT629843 EST1154255 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PIME149, mRNA sequence
Length = 669
Score = 34.2 bits (17), Expect = 3.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 201 gctgaggaaaagaaagc 217
|||||||||||||||||
Sbjct: 399 gctgaggaaaagaaagc 415
>gb|DT630220.1|DT630220 EST1154632 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PIME634, mRNA sequence
Length = 733
Score = 34.2 bits (17), Expect = 3.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 201 gctgaggaaaagaaagc 217
|||||||||||||||||
Sbjct: 399 gctgaggaaaagaaagc 415
Database: Pinus_nucl_with_EST.fasta
Posted date: May 2, 2006 3:25 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 45,600
Number of Sequences: 355925
Number of extensions: 45600
Number of successful extensions: 12191
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12164
Number of HSP's gapped (non-prelim): 27
length of query: 315
length of database: 217,277,237
effective HSP length: 18
effective length of query: 297
effective length of database: 210,870,587
effective search space: 62628564339
effective search space used: 62628564339
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)