BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QAE37h07.yg.2.1
         (642 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CO159016.1|CO159016  FLD1_10_F07.g1_A029 Root flooded Pin...    46   0.002
gb|DR071679.1|DR071679  RTDK1_21_A05.g1_A029 Roots, dark Pin...    46   0.002
gb|CD025387.1|CD025387  NXSI_050_E11_F NXSI (Nsf Xylem Side ...    44   0.007
gb|AI812992.1|AI812992  2E10 Pine Lambda Zap Xylem library P...    42   0.027
gb|AL750522.1|AL750522  AL750522 RN Pinus pinaster cDNA clon...    40   0.11 
>gb|CO159016.1|CO159016 FLD1_10_F07.g1_A029 Root flooded Pinus taeda cDNA clone
           FLD1_10_F07_A029 5', mRNA sequence
          Length = 796

 Score = 46.1 bits (23), Expect = 0.002
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 80  cctgctcctcatcccaccaagattcccaact 110
           |||| |||||||||||||| |||||||||||
Sbjct: 489 cctgatcctcatcccaccaggattcccaact 459

 Score = 42.1 bits (21), Expect = 0.027
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 184 ttttgccactcgaaaccagaagggttgaa 212
           |||||||||||||| |||||||| |||||
Sbjct: 385 ttttgccactcgaatccagaaggattgaa 357
>gb|DR071679.1|DR071679 RTDK1_21_A05.g1_A029 Roots, dark Pinus taeda cDNA clone
           RTDK1_21_A05_A029 5', mRNA sequence
          Length = 607

 Score = 46.1 bits (23), Expect = 0.002
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 80  cctgctcctcatcccaccaagattcccaact 110
           |||| |||||||||||||| |||||||||||
Sbjct: 265 cctgatcctcatcccaccaggattcccaact 235

 Score = 42.1 bits (21), Expect = 0.027
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 184 ttttgccactcgaaaccagaagggttgaa 212
           |||||||||||||| |||||||| |||||
Sbjct: 161 ttttgccactcgaatccagaaggattgaa 133
>gb|CD025387.1|CD025387 NXSI_050_E11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
           clone NXSI_050_E11 5' similar to Arabidopsis thaliana
           sequence At2g36850 putative glucan synthase see
           http://mips.gsf.de/proj/thal/db/index.html, mRNA
           sequence
          Length = 163

 Score = 44.1 bits (22), Expect = 0.007
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 82  tgctcctcatcccaccaagattccca 107
           ||||||||||||||||||| ||||||
Sbjct: 95  tgctcctcatcccaccaagtttccca 70
>gb|AI812992.1|AI812992 2E10 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
          Length = 675

 Score = 42.1 bits (21), Expect = 0.027
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 82  tgctcctcatcccaccaagattcccaact 110
           |||||||  ||||||||||||||||||||
Sbjct: 95  tgctccttttcccaccaagattcccaact 67
>gb|AL750522.1|AL750522 AL750522 RN Pinus pinaster cDNA clone RN03D12 similar to GLUCAN
           (CALLOSE) SYNTHASE, mRNA sequence
          Length = 378

 Score = 40.1 bits (20), Expect = 0.11
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 75  atgcgcctgctcctcatcccaccaagattcccaact 110
           |||| |||| || ||||||||||| |||||||||||
Sbjct: 214 atgctcctgttcatcatcccaccaggattcccaact 179
  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 43,267
Number of Sequences: 355925
Number of extensions: 43267
Number of successful extensions: 9099
Number of sequences better than  0.5: 5
Number of HSP's better than  0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9090
Number of HSP's gapped (non-prelim): 9
length of query: 642
length of database: 217,277,237
effective HSP length: 19
effective length of query: 623
effective length of database: 210,514,662
effective search space: 131150634426
effective search space used: 131150634426
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)