BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE37h07.yg.2.1
(642 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO159016.1|CO159016 FLD1_10_F07.g1_A029 Root flooded Pin... 46 0.002
gb|DR071679.1|DR071679 RTDK1_21_A05.g1_A029 Roots, dark Pin... 46 0.002
gb|CD025387.1|CD025387 NXSI_050_E11_F NXSI (Nsf Xylem Side ... 44 0.007
gb|AI812992.1|AI812992 2E10 Pine Lambda Zap Xylem library P... 42 0.027
gb|AL750522.1|AL750522 AL750522 RN Pinus pinaster cDNA clon... 40 0.11
>gb|CO159016.1|CO159016 FLD1_10_F07.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_10_F07_A029 5', mRNA sequence
Length = 796
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 80 cctgctcctcatcccaccaagattcccaact 110
|||| |||||||||||||| |||||||||||
Sbjct: 489 cctgatcctcatcccaccaggattcccaact 459
Score = 42.1 bits (21), Expect = 0.027
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 184 ttttgccactcgaaaccagaagggttgaa 212
|||||||||||||| |||||||| |||||
Sbjct: 385 ttttgccactcgaatccagaaggattgaa 357
>gb|DR071679.1|DR071679 RTDK1_21_A05.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_21_A05_A029 5', mRNA sequence
Length = 607
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 80 cctgctcctcatcccaccaagattcccaact 110
|||| |||||||||||||| |||||||||||
Sbjct: 265 cctgatcctcatcccaccaggattcccaact 235
Score = 42.1 bits (21), Expect = 0.027
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 184 ttttgccactcgaaaccagaagggttgaa 212
|||||||||||||| |||||||| |||||
Sbjct: 161 ttttgccactcgaatccagaaggattgaa 133
>gb|CD025387.1|CD025387 NXSI_050_E11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_050_E11 5' similar to Arabidopsis thaliana
sequence At2g36850 putative glucan synthase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 163
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 82 tgctcctcatcccaccaagattccca 107
||||||||||||||||||| ||||||
Sbjct: 95 tgctcctcatcccaccaagtttccca 70
>gb|AI812992.1|AI812992 2E10 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 675
Score = 42.1 bits (21), Expect = 0.027
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 82 tgctcctcatcccaccaagattcccaact 110
||||||| ||||||||||||||||||||
Sbjct: 95 tgctccttttcccaccaagattcccaact 67
>gb|AL750522.1|AL750522 AL750522 RN Pinus pinaster cDNA clone RN03D12 similar to GLUCAN
(CALLOSE) SYNTHASE, mRNA sequence
Length = 378
Score = 40.1 bits (20), Expect = 0.11
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 75 atgcgcctgctcctcatcccaccaagattcccaact 110
|||| |||| || ||||||||||| |||||||||||
Sbjct: 214 atgctcctgttcatcatcccaccaggattcccaact 179
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 43,267
Number of Sequences: 355925
Number of extensions: 43267
Number of successful extensions: 9099
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9090
Number of HSP's gapped (non-prelim): 9
length of query: 642
length of database: 217,277,237
effective HSP length: 19
effective length of query: 623
effective length of database: 210,514,662
effective search space: 131150634426
effective search space used: 131150634426
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)