BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAD4g02.sg.2.1
(308 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AI812993.1|AI812993 2E11 Pine Lambda Zap Xylem library P... 42 0.013
gb|BX255434.1|BX255434 BX255434 Pinus pinaster differenciat... 42 0.013
gb|BG275620.1|BG275620 NXSI_144_A03_F NXSI (Nsf Xylem Side ... 42 0.013
gb|CF399316.1|CF399316 RTDS3_27_G09.g1_A022 Drought-stresse... 42 0.013
gb|CF670014.1|CF670014 RTCNT1_47_C05.g1_A029 Root control P... 42 0.013
gb|CF670024.1|CF670024 RTCNT1_47_D05.g1_A029 Root control P... 42 0.013
gb|BX678886.1|BX678886 BX678886 RS Pinus pinaster cDNA clon... 42 0.013
gb|CO168955.1|CO168955 NDL1_3_E08.g1_A029 Needles control P... 42 0.013
gb|CV135596.1|CV135596 EST846805 Sequencing ESTs from loblo... 42 0.013
gb|CV136624.1|CV136624 EST847833 Sequencing ESTs from loblo... 42 0.013
gb|CX648556.1|CX648556 COLD1_29_A03.g1_A029 Root cold Pinus... 42 0.013
gb|DN457731.1|DN457731 EST953530 Sequencing ESTs from loblo... 42 0.013
gb|DN460210.1|DN460210 EST956009 Sequencing ESTs from loblo... 42 0.013
gb|DR094115.1|DR094115 STRR1_12_C04.g1_A033 Stem Response R... 42 0.013
gb|DR178249.1|DR178249 RTMNUT1_10_G12.b1_A029 Roots minus m... 42 0.013
gb|DR688563.1|DR688563 EST1078648 Normalized pine embryo li... 42 0.013
gb|DR691522.1|DR691522 EST1081609 Normalized pine embryo li... 42 0.013
gb|DR744924.1|DR744924 RTCU1_25_G06.g1_A029 Roots plus adde... 42 0.013
gb|DT626458.1|DT626458 EST1158382 Sequencing ESTs from lobl... 42 0.013
gb|DT626805.1|DT626805 EST1159881 Sequencing ESTs from lobl... 42 0.013
dbj|BD236521.1| Materials and method for modification of pl... 42 0.013
gb|DR177347.1|DR177347 RTMNUT1_4_F09.g1_A029 Roots minus mi... 40 0.050
>gb|AI812993.1|AI812993 2E11 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 643
Score = 42.1 bits (21), Expect = 0.013
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 156 cttggatgagcgccaacggggttgaagtacctgagca 192
||||| ||||| ||||| |||||||||||||| ||||
Sbjct: 579 cttgggtgagctccaactgggttgaagtacctcagca 543
>gb|BX255434.1|BX255434 BX255434 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP005G04, mRNA sequence
Length = 668
Score = 42.1 bits (21), Expect = 0.013
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 156 cttggatgagcgccaacggggttgaagtacctgagca 192
||||| ||||| ||||| |||||||||||||| ||||
Sbjct: 57 cttgggtgagctccaactgggttgaagtacctcagca 21
>gb|BG275620.1|BG275620 NXSI_144_A03_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_144_A03 5' similar to Arabidopsis thaliana
sequence At1g12780 uridine diphosphate glucose epimerase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 522
Score = 42.1 bits (21), Expect = 0.013
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 156 cttggatgagcgccaacggggttgaagtacctgagca 192
||||| ||||| ||||| |||||||||||||| ||||
Sbjct: 62 cttgggtgagctccaactgggttgaagtacctcagca 26
>gb|CF399316.1|CF399316 RTDS3_27_G09.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_27_G09_A022 5', mRNA sequence
Length = 781
Score = 42.1 bits (21), Expect = 0.013
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 156 cttggatgagcgccaacggggttgaagtacctgagca 192
||||| ||||| ||||| |||||||||||||| ||||
Sbjct: 577 cttgggtgagctccaactgggttgaagtacctcagca 541
>gb|CF670014.1|CF670014 RTCNT1_47_C05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_47_C05_A029 5', mRNA sequence
Length = 801
Score = 42.1 bits (21), Expect = 0.013
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 156 cttggatgagcgccaacggggttgaagtacctgagca 192
||||| ||||| ||||| |||||||||||||| ||||
Sbjct: 604 cttgggtgagctccaactgggttgaagtacctcagca 568
>gb|CF670024.1|CF670024 RTCNT1_47_D05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_47_D05_A029 5', mRNA sequence
Length = 800
Score = 42.1 bits (21), Expect = 0.013
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 156 cttggatgagcgccaacggggttgaagtacctgagca 192
||||| ||||| ||||| |||||||||||||| ||||
Sbjct: 602 cttgggtgagctccaactgggttgaagtacctcagca 566
>gb|BX678886.1|BX678886 BX678886 RS Pinus pinaster cDNA clone RS16E09, mRNA sequence
Length = 661
Score = 42.1 bits (21), Expect = 0.013
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 156 cttggatgagcgccaacggggttgaagtacctgagca 192
||||| ||||| ||||| |||||||||||||| ||||
Sbjct: 220 cttgggtgagctccaactgggttgaagtacctcagca 184
>gb|CO168955.1|CO168955 NDL1_3_E08.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_3_E08_A029 5', mRNA sequence
Length = 810
Score = 42.1 bits (21), Expect = 0.013
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 156 cttggatgagcgccaacggggttgaagtacctgagca 192
||||| ||||| ||||| |||||||||||||| ||||
Sbjct: 609 cttgggtgagctccaactgggttgaagtacctcagca 573
>gb|CV135596.1|CV135596 EST846805 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PICME12 5' end, mRNA sequence
Length = 852
Score = 42.1 bits (21), Expect = 0.013
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 156 cttggatgagcgccaacggggttgaagtacctgagca 192
||||| ||||| ||||| |||||||||||||| ||||
Sbjct: 646 cttgggtgagctccaactgggttgaagtacctcagca 610
>gb|CV136624.1|CV136624 EST847833 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIAE04 5' end, mRNA sequence
Length = 906
Score = 42.1 bits (21), Expect = 0.013
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 156 cttggatgagcgccaacggggttgaagtacctgagca 192
||||| ||||| ||||| |||||||||||||| ||||
Sbjct: 648 cttgggtgagctccaactgggttgaagtacctcagca 612
>gb|CX648556.1|CX648556 COLD1_29_A03.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_29_A03_A029 5', mRNA sequence
Length = 695
Score = 42.1 bits (21), Expect = 0.013
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 156 cttggatgagcgccaacggggttgaagtacctgagca 192
||||| ||||| ||||| |||||||||||||| ||||
Sbjct: 640 cttgggtgagctccaactgggttgaagtacctcagca 604
>gb|DN457731.1|DN457731 EST953530 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIH331 5' end, mRNA sequence
Length = 925
Score = 42.1 bits (21), Expect = 0.013
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 156 cttggatgagcgccaacggggttgaagtacctgagca 192
||||| ||||| ||||| |||||||||||||| ||||
Sbjct: 648 cttgggtgagctccaactgggttgaagtacctcagca 612
>gb|DN460210.1|DN460210 EST956009 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIHV83 5' end, mRNA sequence
Length = 880
Score = 42.1 bits (21), Expect = 0.013
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 156 cttggatgagcgccaacggggttgaagtacctgagca 192
||||| ||||| ||||| |||||||||||||| ||||
Sbjct: 648 cttgggtgagctccaactgggttgaagtacctcagca 612
>gb|DR094115.1|DR094115 STRR1_12_C04.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_12_C04_A033 5', mRNA sequence
Length = 847
Score = 42.1 bits (21), Expect = 0.013
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 156 cttggatgagcgccaacggggttgaagtacctgagca 192
||||| ||||| ||||| |||||||||||||| ||||
Sbjct: 229 cttgggtgagctccaactgggttgaagtacctcagca 193
>gb|DR178249.1|DR178249 RTMNUT1_10_G12.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_10_G12_A029 3', mRNA sequence
Length = 777
Score = 42.1 bits (21), Expect = 0.013
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 156 cttggatgagcgccaacggggttgaagtacctgagca 192
||||| ||||| ||||| |||||||||||||| ||||
Sbjct: 49 cttgggtgagctccaactgggttgaagtacctcagca 13
>gb|DR688563.1|DR688563 EST1078648 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAC779 3' end, mRNA sequence
Length = 943
Score = 42.1 bits (21), Expect = 0.013
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 156 cttggatgagcgccaacggggttgaagtacctgagca 192
||||| ||||| ||||| |||||||||||||| ||||
Sbjct: 662 cttgggtgagctccaactgggttgaagtacctcagca 626
>gb|DR691522.1|DR691522 EST1081609 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAD946 3' end, mRNA sequence
Length = 847
Score = 42.1 bits (21), Expect = 0.013
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 156 cttggatgagcgccaacggggttgaagtacctgagca 192
||||| ||||| ||||| |||||||||||||| ||||
Sbjct: 639 cttgggtgagctccaactgggttgaagtacctcagca 603
>gb|DR744924.1|DR744924 RTCU1_25_G06.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_25_G06_A029 5', mRNA sequence
Length = 691
Score = 42.1 bits (21), Expect = 0.013
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 156 cttggatgagcgccaacggggttgaagtacctgagca 192
||||| ||||| ||||| |||||||||||||| ||||
Sbjct: 315 cttgggtgagctccaactgggttgaagtacctcagca 279
>gb|DT626458.1|DT626458 EST1158382 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAB05 5' end, mRNA sequence
Length = 723
Score = 42.1 bits (21), Expect = 0.013
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 156 cttggatgagcgccaacggggttgaagtacctgagca 192
||||| ||||| ||||| |||||||||||||| ||||
Sbjct: 648 cttgggtgagctccaactgggttgaagtacctcagca 612
>gb|DT626805.1|DT626805 EST1159881 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAR51 5' end, mRNA sequence
Length = 942
Score = 42.1 bits (21), Expect = 0.013
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 156 cttggatgagcgccaacggggttgaagtacctgagca 192
||||| ||||| ||||| |||||||||||||| ||||
Sbjct: 648 cttgggtgagctccaactgggttgaagtacctcagca 612
>dbj|BD236521.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 323
Score = 42.1 bits (21), Expect = 0.013
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 156 cttggatgagcgccaacggggttgaagtacctgagca 192
||||| ||||| ||||| |||||||||||||| ||||
Sbjct: 135 cttgggtgagctccaactgggttgaagtacctcagca 99
>gb|DR177347.1|DR177347 RTMNUT1_4_F09.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_4_F09_A029 5', mRNA sequence
Length = 746
Score = 40.1 bits (20), Expect = 0.050
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 156 cttggatgagcgccaacggggttgaagtacct 187
||||| ||||| ||||| ||||||||||||||
Sbjct: 666 cttgggtgagctccaactgggttgaagtacct 697
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,236
Number of Sequences: 355925
Number of extensions: 21236
Number of successful extensions: 4698
Number of sequences better than 0.5: 22
Number of HSP's better than 0.5 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4676
Number of HSP's gapped (non-prelim): 22
length of query: 308
length of database: 217,277,237
effective HSP length: 18
effective length of query: 290
effective length of database: 210,870,587
effective search space: 61152470230
effective search space used: 61152470230
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)