BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAD15f02.sg.3.2
(2357 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO364891.1|CO364891 RTK1_22_A01.g1_A029 Roots minus pota... 50 4e-004
gb|DR684555.1|DR684555 EST1074632 Normalized pine embryo li... 50 4e-004
gb|DR685003.1|DR685003 EST1075080 Normalized pine embryo li... 50 4e-004
gb|DT632176.1|DT632176 EST1147107 Normalized pine embryo li... 50 4e-004
gb|DT632438.1|DT632438 EST1147369 Normalized pine embryo li... 50 4e-004
gb|DT635547.1|DT635547 EST1150478 Normalized pine embryo li... 50 4e-004
>gb|CO364891.1|CO364891 RTK1_22_A01.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_22_A01_A029 5', mRNA sequence
Length = 848
Score = 50.1 bits (25), Expect = 4e-004
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 451 gatgattatcacatgatgttaaggttcctaaaagcacggaaatttgaagttgagaaa 507
||||||||||| |||||||| || ||| | |||||| |||||||||| ||||||||
Sbjct: 468 gatgattatcatatgatgttgagattcttgaaagcaaggaaatttgacattgagaaa 524
Score = 42.1 bits (21), Expect = 0.10
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 148 atgtcaggccctctcgaccgatttgctaggccatgctttga 188
||||| || ||||||||| ||||||||||||| || |||||
Sbjct: 168 atgtcgggtcctctcgacagatttgctaggccgtgttttga 208
>gb|DR684555.1|DR684555 EST1074632 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAU07 3' end, mRNA sequence
Length = 801
Score = 50.1 bits (25), Expect = 4e-004
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 451 gatgattatcacatgatgttaaggttcctaaaagcacggaaatttgaagttgagaaa 507
||||||||||| |||||||| || ||| | |||||| |||||||||| ||||||||
Sbjct: 517 gatgattatcatatgatgttgagattcttgaaagcaaggaaatttgacattgagaaa 573
Score = 42.1 bits (21), Expect = 0.10
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 148 atgtcaggccctctcgaccgatttgctaggccatgctttga 188
||||| || ||||||||| ||||||||||||| || |||||
Sbjct: 217 atgtcgggtcctctcgacagatttgctaggccgtgttttga 257
>gb|DR685003.1|DR685003 EST1075080 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAZ05 3' end, mRNA sequence
Length = 743
Score = 50.1 bits (25), Expect = 4e-004
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 451 gatgattatcacatgatgttaaggttcctaaaagcacggaaatttgaagttgagaaa 507
||||||||||| |||||||| || ||| | |||||| |||||||||| ||||||||
Sbjct: 571 gatgattatcatatgatgttgagattcttgaaagcaaggaaatttgacattgagaaa 627
Score = 42.1 bits (21), Expect = 0.10
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 148 atgtcaggccctctcgaccgatttgctaggccatgctttga 188
||||| || ||||||||| ||||||||||||| || |||||
Sbjct: 271 atgtcgggtcctctcgacagatttgctaggccgtgttttga 311
>gb|DT632176.1|DT632176 EST1147107 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFH28 3' end, mRNA sequence
Length = 772
Score = 50.1 bits (25), Expect = 4e-004
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 451 gatgattatcacatgatgttaaggttcctaaaagcacggaaatttgaagttgagaaa 507
||||||||||| |||||||| || ||| | |||||| |||||||||| ||||||||
Sbjct: 525 gatgattatcatatgatgttgagattcttgaaagcaaggaaatttgacattgagaaa 581
Score = 42.1 bits (21), Expect = 0.10
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 148 atgtcaggccctctcgaccgatttgctaggccatgctttga 188
||||| || ||||||||| ||||||||||||| || |||||
Sbjct: 225 atgtcgggtcctctcgacagatttgctaggccgtgttttga 265
>gb|DT632438.1|DT632438 EST1147369 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFK03 3' end, mRNA sequence
Length = 855
Score = 50.1 bits (25), Expect = 4e-004
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 451 gatgattatcacatgatgttaaggttcctaaaagcacggaaatttgaagttgagaaa 507
||||||||||| |||||||| || ||| | |||||| |||||||||| ||||||||
Sbjct: 579 gatgattatcatatgatgttgagattcttgaaagcaaggaaatttgacattgagaaa 635
Score = 42.1 bits (21), Expect = 0.10
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 148 atgtcaggccctctcgaccgatttgctaggccatgctttga 188
||||| || ||||||||| ||||||||||||| || |||||
Sbjct: 279 atgtcgggtcctctcgacagatttgctaggccgtgttttga 319
>gb|DT635547.1|DT635547 EST1150478 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGI03 3' end, mRNA sequence
Length = 746
Score = 50.1 bits (25), Expect = 4e-004
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 451 gatgattatcacatgatgttaaggttcctaaaagcacggaaatttgaagttgagaaa 507
||||||||||| |||||||| || ||| | |||||| |||||||||| ||||||||
Sbjct: 574 gatgattatcatatgatgttgagattcttgaaagcaaggaaatttgacattgagaaa 630
Score = 42.1 bits (21), Expect = 0.10
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 148 atgtcaggccctctcgaccgatttgctaggccatgctttga 188
||||| || ||||||||| ||||||||||||| || |||||
Sbjct: 274 atgtcgggtcctctcgacagatttgctaggccgtgttttga 314
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 286,899
Number of Sequences: 355925
Number of extensions: 286899
Number of successful extensions: 77033
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77015
Number of HSP's gapped (non-prelim): 18
length of query: 2357
length of database: 217,277,237
effective HSP length: 20
effective length of query: 2337
effective length of database: 210,158,737
effective search space: 491140968369
effective search space used: 491140968369
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)