BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAD10d05.sg.3.3
(1563 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR684250.1|DR684250 EST1074327 Normalized pine embryo li... 228 5e-058
gb|DT631901.1|DT631901 EST1146832 Normalized pine embryo li... 228 5e-058
gb|DR681905.1|DR681905 EST1071980 Normalized pine embryo li... 188 5e-046
gb|DT630855.1|DT630855 EST1145786 Normalized pine embryo li... 188 5e-046
gb|CO172564.1|CO172564 NDL1_30_B04.g1_A029 Needles control ... 178 5e-043
gb|CO174481.1|CO174481 NDL1_44_F10.b1_A029 Needles control ... 178 5e-043
gb|CO361115.1|CO361115 NDL2_2_G09.g1_A029 Needles control 2... 178 5e-043
gb|CO362313.1|CO362313 RTK1_2_F07.g1_A029 Roots minus potas... 178 5e-043
gb|CO368232.1|CO368232 RTK1_39_A02.g1_A029 Roots minus pota... 178 5e-043
gb|CO368524.1|CO368524 RTK1_41_E01.b1_A029 Roots minus pota... 178 5e-043
gb|CX648263.1|CX648263 COLD1_27_C01.g1_A029 Root cold Pinus... 178 5e-043
gb|DR743426.1|DR743426 RTCU1_15_G02.g1_A029 Roots plus adde... 178 5e-043
gb|DR743501.1|DR743501 RTCU1_16_G01.b1_A029 Roots plus adde... 178 5e-043
gb|BE431361.1|BE431361 NXNV_181_C05_F Nsf Xylem Normal wood... 174 7e-042
gb|CF394806.1|CF394806 RTDS2_7_G07.g1_A021 Drought-stressed... 170 1e-040
gb|CO363177.1|CO363177 RTK1_8_C11.b1_A029 Roots minus potas... 170 1e-040
gb|CX651731.1|CX651731 COLD1_54_A03.g1_A029 Root cold Pinus... 170 1e-040
gb|DR744286.1|DR744286 RTCU1_21_A08.g1_A029 Roots plus adde... 170 1e-040
gb|BQ634599.1|BQ634599 NXRV070_H09_F NXRV (Nsf Xylem Root w... 167 2e-039
gb|CO160140.1|CO160140 FLD1_19_B05.b1_A029 Root flooded Pin... 167 2e-039
gb|CO361051.1|CO361051 NDL2_2_G09.b1_A029 Needles control 2... 167 2e-039
gb|DR744218.1|DR744218 RTCU1_21_A08.b1_A029 Roots plus adde... 167 2e-039
gb|BX252112.1|BX252112 BX252112 Pinus pinaster differenciat... 163 3e-038
gb|BM492953.1|BM492953 NXRV_032_F02_F NXRV (Nsf Xylem Root ... 163 3e-038
gb|CF390894.1|CF390894 RTDR3_2_D09.g1_A022 Loblolly pine ro... 163 3e-038
gb|CO174564.1|CO174564 NDL1_44_F10.g1_A029 Needles control ... 163 3e-038
gb|CO363253.1|CO363253 RTK1_8_C11.g1_A029 Roots minus potas... 163 3e-038
gb|CO368153.1|CO368153 RTK1_39_A02.b1_A029 Roots minus pota... 163 3e-038
gb|CX651023.1|CX651023 COLD1_49_D10.g1_A029 Root cold Pinus... 163 3e-038
gb|DR101850.1|DR101850 STRR1_76_F09.b1_A033 Stem Response R... 163 3e-038
gb|DR101927.1|DR101927 STRR1_76_F09.g1_A033 Stem Response R... 163 3e-038
gb|DR388669.1|DR388669 RTHG1_29_F04.g1_A029 Roots plus adde... 163 3e-038
gb|BX253257.1|BX253257 BX253257 Pinus pinaster differenciat... 155 7e-036
gb|BX254059.1|BX254059 BX254059 Pinus pinaster differenciat... 155 7e-036
gb|BM367847.1|BM367847 NXLV_058_H10_F NXLV (Nsf Xylem Late ... 155 7e-036
gb|CF473917.1|CF473917 RTWW2_19_F07.g1_A021 Well-watered lo... 155 7e-036
gb|DR385269.1|DR385269 RTHG1_7_D09.g1_A029 Roots plus added... 153 3e-035
gb|CF474787.1|CF474787 RTWW2_7_H09.g1_A021 Well-watered lob... 147 2e-033
gb|DR097796.1|DR097796 STRR1_37_C05.b1_A033 Stem Response R... 147 2e-033
gb|DR385258.1|DR385258 RTHG1_7_C09.g1_A029 Roots plus added... 147 2e-033
gb|BX255461.1|BX255461 BX255461 Pinus pinaster differenciat... 143 2e-032
gb|DR101800.1|DR101800 STRR1_76_A01.b1_A033 Stem Response R... 143 2e-032
gb|DR080582.1|DR080582 RTFEPL1_23_E12.g1_A029 Roots plus ad... 139 4e-031
gb|CO200246.1|CO200246 GEO2_6_F12.b1_A032 Root gravitropism... 137 2e-030
gb|DR023534.1|DR023534 STRS1_58_G04.b1_A034 Shoot tip pitch... 137 2e-030
gb|BX250805.1|BX250805 BX250805 Pinus pinaster differenciat... 135 6e-030
gb|CO362322.1|CO362322 RTK1_2_G07.g1_A029 Roots minus potas... 133 2e-029
gb|DR058671.1|DR058671 RTNIT1_13_E08.b1_A029 Roots minus ni... 133 2e-029
gb|DR119659.1|DR119659 RTMG1_24_D09.g1_A029 Roots minus mag... 131 9e-029
gb|DR161098.1|DR161098 RTFE1_9_G07.g1_A029 Roots minus iron... 127 1e-027
gb|DR743576.1|DR743576 RTCU1_16_G01.g1_A029 Roots plus adde... 127 1e-027
gb|CX650950.1|CX650950 COLD1_49_D10.b1_A029 Root cold Pinus... 123 2e-026
gb|DR119582.1|DR119582 RTMG1_24_D09.b1_A029 Roots minus mag... 121 9e-026
gb|AW043389.1|AW043389 ST32G10 Pine TriplEx shoot tip libra... 119 4e-025
gb|BG040781.1|BG040781 NXSI_114_H09_F NXSI (Nsf Xylem Side ... 119 4e-025
gb|BI077186.1|BI077186 NXPV_094_A08_F NXPV (Nsf Xylem Plani... 119 4e-025
gb|BQ634311.1|BQ634311 NXRV067_D01_F NXRV (Nsf Xylem Root w... 119 4e-025
gb|BQ699988.1|BQ699988 NXRV132_F07_F NXRV (Nsf Xylem Root w... 119 4e-025
gb|BQ700577.1|BQ700577 NXRV108_D12_F NXRV (Nsf Xylem Root w... 119 4e-025
gb|CF393351.1|CF393351 RTDR3_20_D11.g1_A022 Loblolly pine r... 119 4e-025
gb|CF479873.1|CF479873 RTWW3_12_D01.g1_A022 Well-watered lo... 119 4e-025
gb|DR011897.1|DR011897 HEAT1_8_D04.g1_A029 Root at 37 C for... 119 4e-025
gb|DR058256.1|DR058256 RTNIT1_10_E11.g1_A029 Roots minus ni... 119 4e-025
gb|DR070520.1|DR070520 RTDK1_13_G11.g1_A029 Roots, dark Pin... 119 4e-025
gb|DR101871.1|DR101871 STRR1_76_A01.g1_A033 Stem Response R... 119 4e-025
gb|CO160213.1|CO160213 FLD1_19_B05.g1_A029 Root flooded Pin... 113 2e-023
gb|CO369973.1|CO369973 RTK1_55_D09.g1_A029 Roots minus pota... 113 2e-023
gb|DR023579.1|DR023579 STRS1_58_D07.g1_A034 Shoot tip pitch... 113 2e-023
gb|DR080167.1|DR080167 RTFEPL1_20_F07.g1_A029 Roots plus ad... 111 9e-023
gb|AW011451.1|AW011451 ST20H10 Pine TriplEx shoot tip libra... 109 3e-022
gb|BQ702133.1|BQ702133 NXSI_125_C12_F NXSI (Nsf Xylem Side ... 109 3e-022
gb|CF664728.1|CF664728 RTCNT1_11_D02.g1_A029 Root control P... 109 3e-022
gb|CX651662.1|CX651662 COLD1_54_A03.b1_A029 Root cold Pinus... 109 3e-022
gb|DR097864.1|DR097864 STRR1_37_C05.g1_A033 Stem Response R... 109 3e-022
gb|BF517650.1|BF517650 NXSI_028_C11_F NXSI (Nsf Xylem Side ... 105 5e-021
gb|BF609611.1|BF609611 NXSI_047_B12_F NXSI (Nsf Xylem Side ... 105 5e-021
gb|CD024262.1|CD024262 NXRV_038_E02_F NXRV (Nsf Xylem Root ... 105 5e-021
gb|BM158114.1|BM158114 NXLV_029_F04_F NXLV (Nsf Xylem Late ... 103 2e-020
gb|BQ107076.1|BQ107076 NXLV086_E06_F NXLV (Nsf Xylem Late w... 94 2e-017
gb|DR054234.1|DR054234 RTCA1_16_C01.b1_A029 Roots minus cal... 94 2e-017
gb|DR058757.1|DR058757 RTNIT1_13_E08.g1_A029 Roots minus ni... 94 2e-017
gb|AW985254.1|AW985254 NXNV_135_A01_F Nsf Xylem Normal wood... 90 3e-016
gb|BG275183.1|BG275183 NXSI_140_F11_F NXSI (Nsf Xylem Side ... 82 8e-014
gb|CF390863.1|CF390863 RTDR3_2_D09.b1_A022 Loblolly pine ro... 82 8e-014
gb|CF394742.1|CF394742 RTDS2_7_G07.b1_A021 Drought-stressed... 82 8e-014
gb|AW289559.1|AW289559 NXNV002B07F Nsf Xylem Normal wood Ve... 80 3e-013
gb|CD028113.1|CD028113 NXNV002B07 Nsf Xylem Normal wood Ver... 80 3e-013
gb|AL749861.1|AL749861 AL749861 AS Pinus pinaster cDNA clon... 78 1e-012
gb|BE241394.1|BE241394 NXNV_187_G02_F Nsf Xylem Normal wood... 78 1e-012
gb|CF664643.1|CF664643 RTCNT1_11_D02.b1_A029 Root control P... 78 1e-012
gb|CR393238.1|CR393238 CR393238 RN Pinus pinaster cDNA clon... 78 1e-012
gb|CO172479.1|CO172479 NDL1_30_B04.b1_A029 Needles control ... 78 1e-012
gb|BX678389.1|BX678389 BX678389 RS Pinus pinaster cDNA clon... 74 2e-011
gb|CO165961.1|CO165961 FLD1_58_G12.b1_A029 Root flooded Pin... 74 2e-011
gb|DR080512.1|DR080512 RTFEPL1_23_E12.b1_A029 Roots plus ad... 74 2e-011
gb|BF778204.1|BF778204 NXSI_083_F07_F NXSI (Nsf Xylem Side ... 72 8e-011
gb|CF474645.1|CF474645 RTWW2_7_H09.b1_A021 Well-watered lob... 70 3e-010
gb|BI643789.1|BI643789 NXPV_123_A02_F NXPV (Nsf Xylem Plani... 62 7e-008
gb|BI643788.1|BI643788 NXPV_123_A01_F NXPV (Nsf Xylem Plani... 58 1e-006
gb|DR070987.1|DR070987 RTDK1_16_G10.g1_A029 Roots, dark Pin... 58 1e-006
gb|BE996820.1|BE996820 NXCI_101_F10_F NXCI (Nsf Xylem Compr... 54 2e-005
gb|BF778278.1|BF778278 NXSI_082_E07_F NXSI (Nsf Xylem Side ... 52 7e-005
gb|AW289664.1|AW289664 NXNV004A03F Nsf Xylem Normal wood Ve... 46 0.004
gb|BM492913.1|BM492913 NXRV_033_H03_F NXRV (Nsf Xylem Root ... 46 0.004
gb|BQ695668.1|BQ695668 NXPV_031_C03_F NXPV (Nsf Xylem Plani... 46 0.004
gb|CD028239.1|CD028239 NXNV004A03 Nsf Xylem Normal wood Ver... 46 0.004
gb|BQ701299.1|BQ701299 NXSI_061_H07_F NXSI (Nsf Xylem Side ... 42 0.068
gb|BM134145.1|BM134145 NXLV_017_C07_F NXLV (Nsf Xylem Late ... 40 0.27
>gb|DR684250.1|DR684250 EST1074327 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAQ55 3' end, mRNA sequence
Length = 842
Score = 228 bits (115), Expect = 5e-058
Identities = 352/431 (81%)
Strand = Plus / Plus
Query: 173 gagctcgacatcgtgatcccgacgatccgcaacctcgacttcctggagatgtggcggccc 232
||||| ||||| ||||| || |||||||| ||| | || ||| ||||||||||| ||||
Sbjct: 154 gagctggacatagtgatacccacgatccggaacttggatttcttggagatgtggaggcca 213
Query: 233 ttcttccagccctaccacctcatcatcgtgcaggacggcgacccgaccaagaccatcaag 292
||||| ||||||| ||||||||||| |||||||| ||||| ||| | ||||||||||
Sbjct: 214 ttctttgagccctatcacctcatcattgtgcaggatggcgatccgtcgaagaccatcagt 273
Query: 293 gtgcccgagggcttcgactacgagctctacaaccgcaacgacatcaaccgcatcctcggg 352
||||| |||| ||||| ||||| || |||||| | || || ||| | | ||||||||
Sbjct: 274 gtgcctcagggtttcgattacgaactttacaacagaaatgatatcgagaggatcctcggc 333
Query: 353 cccaaggcctcctgcatctccttcaaggactccgcctgccgctgcttcggctacatggtc 412
|||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||
Sbjct: 334 cccaaggcctcctgcatctctttcaaggacagtgcctgccgttgcttcggctacatggtc 393
Query: 413 tccaagaagaagtacatctacaccatcgacgacgactgcttcgttgccaaggacccatct 472
|| |||||||| ||||||| || || ||||| ||||||||||||||||| || || ||
Sbjct: 394 tctaagaagaaatacatctttactattgacgatgactgcttcgttgccaacgatccttcc 453
Query: 473 ggcaaggatatcaatgctcttgagcagcacatcaagaacctcctcagcccatccaccccg 532
||||| || ||||||||||| |||||||||||| ||| | ||| ||| || || ||
Sbjct: 454 ggcaatgacatcaatgctctccagcagcacatcatgaatttgctctccccttcaactcca 513
Query: 533 ttcttcttcaacaccctgtacgacccctaccgtgagggtgctgactttgtgcgtggatac 592
||||| ||||| || ||||| || || ||| | ||||||| || ||||| ||||| |||
Sbjct: 514 ttctttttcaatacactgtatgatccatacagacagggtgcagattttgtacgtgggtac 573
Query: 593 cccttcagcct 603
|||||||||||
Sbjct: 574 cccttcagcct 584
Score = 95.6 bits (48), Expect = 5e-018
Identities = 129/156 (82%)
Strand = Plus / Plus
Query: 704 aggtatgttgatgctgtcatgacaatccccaagggaaccttgttccccatgtgtggcatg 763
|||||||||||||| || ||||||| || ||||| || | ||||||||||||||||||
Sbjct: 685 aggtatgttgatgcagttttgacaattccaaagggtacgcttttccccatgtgtggcatg 744
Query: 764 aaccttgccttcgacagggatctcattggccctgctatgtactttggtctcatgggtgat 823
|| | |||||| | |||| | ||||||||||| ||||| ||||| | |||||||||
Sbjct: 745 aatttggccttcaatcgggacttgattggccctgccatgtattttggcttgatgggtgat 804
Query: 824 ggccagcccatcggtcgctacgacgacatgtgggca 859
|||||||| || |||||||| ||||| |||||||||
Sbjct: 805 ggccagcctattggtcgctatgacgatatgtgggca 840
>gb|DT631901.1|DT631901 EST1146832 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFE10 3' end, mRNA sequence
Length = 805
Score = 228 bits (115), Expect = 5e-058
Identities = 352/431 (81%)
Strand = Plus / Plus
Query: 173 gagctcgacatcgtgatcccgacgatccgcaacctcgacttcctggagatgtggcggccc 232
||||| ||||| ||||| || |||||||| ||| | || ||| ||||||||||| ||||
Sbjct: 162 gagctggacatagtgatacccacgatccggaacttggatttcttggagatgtggaggcca 221
Query: 233 ttcttccagccctaccacctcatcatcgtgcaggacggcgacccgaccaagaccatcaag 292
||||| ||||||| ||||||||||| |||||||| ||||| ||| | ||||||||||
Sbjct: 222 ttctttgagccctatcacctcatcattgtgcaggatggcgatccgtcgaagaccatcagt 281
Query: 293 gtgcccgagggcttcgactacgagctctacaaccgcaacgacatcaaccgcatcctcggg 352
||||| |||| ||||| ||||| || |||||| | || || ||| | | ||||||||
Sbjct: 282 gtgcctcagggtttcgattacgaactttacaacagaaatgatatcgagaggatcctcggc 341
Query: 353 cccaaggcctcctgcatctccttcaaggactccgcctgccgctgcttcggctacatggtc 412
|||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||
Sbjct: 342 cccaaggcctcctgcatctctttcaaggacagtgcctgccgttgcttcggctacatggtc 401
Query: 413 tccaagaagaagtacatctacaccatcgacgacgactgcttcgttgccaaggacccatct 472
|| |||||||| ||||||| || || ||||| ||||||||||||||||| || || ||
Sbjct: 402 tctaagaagaaatacatctttactattgacgatgactgcttcgttgccaacgatccttcc 461
Query: 473 ggcaaggatatcaatgctcttgagcagcacatcaagaacctcctcagcccatccaccccg 532
||||| || ||||||||||| |||||||||||| ||| | ||| ||| || || ||
Sbjct: 462 ggcaatgacatcaatgctctccagcagcacatcatgaatttgctctccccttcaactcca 521
Query: 533 ttcttcttcaacaccctgtacgacccctaccgtgagggtgctgactttgtgcgtggatac 592
||||| ||||| || ||||| || || ||| | ||||||| || ||||| ||||| |||
Sbjct: 522 ttctttttcaatacactgtatgatccatacagacagggtgcagattttgtacgtgggtac 581
Query: 593 cccttcagcct 603
|||||||||||
Sbjct: 582 cccttcagcct 592
Score = 54.0 bits (27), Expect = 2e-005
Identities = 87/107 (81%)
Strand = Plus / Plus
Query: 704 aggtatgttgatgctgtcatgacaatccccaagggaaccttgttccccatgtgtggcatg 763
|||||||||||||| || ||||||| || ||||| || | ||||||||||||||||||
Sbjct: 693 aggtatgttgatgcagttttgacaattccaaagggtacgcttttccccatgtgtggcatg 752
Query: 764 aaccttgccttcgacagggatctcattggccctgctatgtactttgg 810
|| | |||||| | |||| | ||||||||||| ||||| |||||
Sbjct: 753 aatttggccttcaatcgggacttgattggccctgccatgtattttgg 799
>gb|DR681905.1|DR681905 EST1071980 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAA353 3' end, mRNA sequence
Length = 698
Score = 188 bits (95), Expect = 5e-046
Identities = 267/323 (82%), Gaps = 1/323 (0%)
Strand = Plus / Plus
Query: 167 aaggacgagctcgacatcgtgatcccgacgatccgcaacctcgacttcctggagatgtgg 226
||||||||||| ||||| || || || |||||||| ||| | || || ||||| ||||||
Sbjct: 163 aaggacgagctggacatagtaatacccacgatccggaacttggattttctggaaatgtgg 222
Query: 227 cggcccttcttccagccctaccacctcatcatcgtgcaggacggcgacccgaccaagacc 286
| || ||||| ||||||| ||||||||||| |||||||| || || ||| | ||||||
Sbjct: 223 agaccattctttgagccctatcacctcatcattgtgcaggatggtgatccgtctaagacc 282
Query: 287 atcaaggtgcccgagggcttcgactacgagctctacaaccgcaacgacatcaaccgcatc 346
|||| ||||| |||| ||||| ||||| ||||||||| | ||||| |||||| | ||
Sbjct: 283 atcagtgtgccgaagggtttcgattacgaactctacaacaggaacgatatcaacagggtc 342
Query: 347 ctcgggcccaaggcctcctgcatctccttcaaggactccgcctgccgctgcttcggctac 406
|| || ||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 343 cttggccccaaggcctcctgcatctccttcaaggatagcgcctgccgttgcttcggctac 402
Query: 407 atggtctccaagaagaagtacatctacaccatcgacgacgactgcttcgttgccaaggac 466
|||||||||||||||| || |||| ||| || || || |||||||| |||||||||||
Sbjct: 403 -tggtctccaagaagaaatatatcttcacaattgatgatgactgctttgttgccaaggat 461
Query: 467 ccatctggcaaggatatcaatgc 489
|| || ||||| || ||||||||
Sbjct: 462 ccctccggcaaagacatcaatgc 484
Score = 58.0 bits (29), Expect = 1e-006
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 635 ggcctgtggctgaacatccctgactatgatgctcccacacagctggtcaagcc 687
||||| ||| |||| ||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 630 ggcctctggatgaatatccctgactatgatgcccccactcagcttgtcaagcc 682
>gb|DT630855.1|DT630855 EST1145786 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMF140 3' end, mRNA sequence
Length = 887
Score = 188 bits (95), Expect = 5e-046
Identities = 267/323 (82%), Gaps = 1/323 (0%)
Strand = Plus / Plus
Query: 167 aaggacgagctcgacatcgtgatcccgacgatccgcaacctcgacttcctggagatgtgg 226
||||||||||| ||||| || || || |||||||| ||| | || || ||||| ||||||
Sbjct: 171 aaggacgagctggacatagtaatacccacgatccggaacttggattttctggaaatgtgg 230
Query: 227 cggcccttcttccagccctaccacctcatcatcgtgcaggacggcgacccgaccaagacc 286
| || ||||| ||||||| ||||||||||| |||||||| || || ||| | ||||||
Sbjct: 231 agaccattctttgagccctatcacctcatcattgtgcaggatggtgatccgtctaagacc 290
Query: 287 atcaaggtgcccgagggcttcgactacgagctctacaaccgcaacgacatcaaccgcatc 346
|||| ||||| |||| ||||| ||||| ||||||||| | ||||| |||||| | ||
Sbjct: 291 atcagtgtgccgaagggtttcgattacgaactctacaacaggaacgatatcaacagggtc 350
Query: 347 ctcgggcccaaggcctcctgcatctccttcaaggactccgcctgccgctgcttcggctac 406
|| || ||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 351 cttggccccaaggcctcctgcatctccttcaaggatagcgcctgccgttgcttcggctac 410
Query: 407 atggtctccaagaagaagtacatctacaccatcgacgacgactgcttcgttgccaaggac 466
|||||||||||||||| || |||| ||| || || || |||||||| |||||||||||
Sbjct: 411 -tggtctccaagaagaaatatatcttcacaattgatgatgactgctttgttgccaaggat 469
Query: 467 ccatctggcaaggatatcaatgc 489
|| || ||||| || ||||||||
Sbjct: 470 ccctccggcaaagacatcaatgc 492
Score = 103 bits (52), Expect = 2e-020
Identities = 201/248 (81%), Gaps = 2/248 (0%)
Strand = Plus / Plus
Query: 635 ggcctgtggctgaacatccctgactatgatgctcccacacagctggtcaagcccaaggag 694
||||| ||| |||| ||||||||||||||||| ||||| ||||| |||||||| ||||
Sbjct: 638 ggcctctggatgaatatccctgactatgatgcccccactcagcttgtcaagcctttggag 697
Query: 695 aggaatgagaggtatgttgatgctgtcatgacaatccccaagggaaccttgttccccatg 754
| || |||||||||||||| || ||||||| || ||||| ||| | ||||| |||
Sbjct: 698 cgcaacaccaggtatgttgatgcagttttgacaattccaaagggtacccttttccctatg 757
Query: 755 tgtggcatgaaccttgccttcgacagggatctcattggccctgctatgtactttggtctc 814
||||| ||||| | |||||| | ||||| | || || ||||| ||||| ||||| |
Sbjct: 758 tgtggaatgaatttggccttcaatagggacttgat-ggtcctgc-atgtattttgggttg 815
Query: 815 atgggtgatggccagcccatcggtcgctacgacgacatgtgggcaggatggtgtgtgaag 874
||||||||||| ||||| || |||||||| ||||| |||||||||||||||||||||||
Sbjct: 816 atgggtgatgggcagccaattggtcgctatgacgatatgtgggcaggatggtgtgtgaaa 875
Query: 875 gtcatctg 882
|| |||||
Sbjct: 876 gttatctg 883
>gb|CO172564.1|CO172564 NDL1_30_B04.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_30_B04_A029 5', mRNA sequence
Length = 755
Score = 178 bits (90), Expect = 5e-043
Identities = 243/294 (82%)
Strand = Plus / Plus
Query: 703 gaggtatgttgatgctgtcatgacaatccccaagggaaccttgttccccatgtgtggcat 762
||||||||||||||| || | ||||| |||||||| || |||||||| |||||||| ||
Sbjct: 158 gaggtatgttgatgcggtgttaacaattcccaagggtactttgttccctatgtgtgggat 217
Query: 763 gaaccttgccttcgacagggatctcattggccctgctatgtactttggtctcatgggtga 822
||| | ||||| || | || | || |||||||| ||||||||||| | ||||| ||
Sbjct: 218 gaatttggcctttgatcgagagttgataggccctgcaatgtactttggattgatgggcga 277
Query: 823 tggccagcccatcggtcgctacgacgacatgtgggcaggatggtgtgtgaaggtcatctg 882
||| ||||| || ||||||||||||||||||||||||||||||||| | ||||| || ||
Sbjct: 278 tggtcagcctattggtcgctacgacgacatgtgggcaggatggtgtatcaaggtaatttg 337
Query: 883 cgaccacctgagcctgggagtcaagactggcctgccatacatctggcacagcaaggctag 942
|||||||| || |||| || ||||| || || || ||||| ||||||||||| |||||
Sbjct: 338 tgaccacctaggcttgggtgtgaagacaggacttccttacatttggcacagcaaagctag 397
Query: 943 caaccccttcgttaacttgaagaaggaatacaagggcatcttctggcaggagga 996
||||| |||||||| |||||||| ||||||||||| ||||| ||||| |||||
Sbjct: 398 taaccctttcgttaatttgaagaaagaatacaaggggatcttttggcaagagga 451
>gb|CO174481.1|CO174481 NDL1_44_F10.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_44_F10_A029 3', mRNA sequence
Length = 814
Score = 178 bits (90), Expect = 5e-043
Identities = 243/294 (82%)
Strand = Plus / Minus
Query: 703 gaggtatgttgatgctgtcatgacaatccccaagggaaccttgttccccatgtgtggcat 762
||||||||||||||| || | ||||| |||||||| || |||||||| |||||||| ||
Sbjct: 565 gaggtatgttgatgcggtgttaacaattcccaagggtactttgttccctatgtgtgggat 506
Query: 763 gaaccttgccttcgacagggatctcattggccctgctatgtactttggtctcatgggtga 822
||| | ||||| || | || | || |||||||| ||||||||||| | ||||| ||
Sbjct: 505 gaatttggcctttgatcgagagttgataggccctgcaatgtactttggattgatgggcga 446
Query: 823 tggccagcccatcggtcgctacgacgacatgtgggcaggatggtgtgtgaaggtcatctg 882
||| ||||| || ||||||||||||||||||||||||||||||||| | ||||| || ||
Sbjct: 445 tggtcagcctattggtcgctacgacgacatgtgggcaggatggtgtatcaaggtaatttg 386
Query: 883 cgaccacctgagcctgggagtcaagactggcctgccatacatctggcacagcaaggctag 942
|||||||| || |||| || ||||| || || || ||||| ||||||||||| |||||
Sbjct: 385 tgaccacctaggcttgggtgtgaagacaggacttccttacatttggcacagcaaagctag 326
Query: 943 caaccccttcgttaacttgaagaaggaatacaagggcatcttctggcaggagga 996
||||| |||||||| |||||||| ||||||||||| ||||| ||||| |||||
Sbjct: 325 taaccctttcgttaatttgaagaaagaatacaaggggatcttttggcaagagga 272
Score = 54.0 bits (27), Expect = 2e-005
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 460 caaggacccatctggcaaggatatcaatgctcttgagcagcacatcaagaa 510
|||||| || ||||| ||||| ||||||||||| ||||||||||| |||||
Sbjct: 808 caaggatccgtctgggaaggacatcaatgctctagagcagcacattaagaa 758
>gb|CO361115.1|CO361115 NDL2_2_G09.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_2_G09_A029 5', mRNA sequence
Length = 854
Score = 178 bits (90), Expect = 5e-043
Identities = 243/294 (82%)
Strand = Plus / Plus
Query: 703 gaggtatgttgatgctgtcatgacaatccccaagggaaccttgttccccatgtgtggcat 762
||||||||||||||| || | ||||| |||||||| || |||||||| |||||||| ||
Sbjct: 181 gaggtatgttgatgcggtgttaacaattcccaagggtactttgttccctatgtgtgggat 240
Query: 763 gaaccttgccttcgacagggatctcattggccctgctatgtactttggtctcatgggtga 822
||| | ||||| || | || | || |||||||| ||||||||||| | ||||| ||
Sbjct: 241 gaatttggcctttgatcgagagttgataggccctgcaatgtactttggattgatgggcga 300
Query: 823 tggccagcccatcggtcgctacgacgacatgtgggcaggatggtgtgtgaaggtcatctg 882
||| ||||| || ||||||||||||||||||||||||||||||||| | ||||| || ||
Sbjct: 301 tggtcagcctattggtcgctacgacgacatgtgggcaggatggtgtatcaaggtaatttg 360
Query: 883 cgaccacctgagcctgggagtcaagactggcctgccatacatctggcacagcaaggctag 942
|||||||| || |||| || ||||| || || || ||||| ||||||||||| |||||
Sbjct: 361 tgaccacctaggcttgggtgtgaagacaggacttccttacatttggcacagcaaagctag 420
Query: 943 caaccccttcgttaacttgaagaaggaatacaagggcatcttctggcaggagga 996
||||| |||||||| |||||||| ||||||||||| ||||| ||||| |||||
Sbjct: 421 taaccctttcgttaatttgaagaaagaatacaaggggatcttttggcaagagga 474
>gb|CO362313.1|CO362313 RTK1_2_F07.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_2_F07_A029 5', mRNA sequence
Length = 810
Score = 178 bits (90), Expect = 5e-043
Identities = 243/294 (82%)
Strand = Plus / Plus
Query: 703 gaggtatgttgatgctgtcatgacaatccccaagggaaccttgttccccatgtgtggcat 762
||||||||||||||| || | ||||| |||||||| || |||||||| |||||||| ||
Sbjct: 158 gaggtatgttgatgcggtgttaacaattcccaagggtactttgttccctatgtgtgggat 217
Query: 763 gaaccttgccttcgacagggatctcattggccctgctatgtactttggtctcatgggtga 822
||| | ||||| || | || | || |||||||| ||||||||||| | ||||| ||
Sbjct: 218 gaatttggcctttgatcgagagttgataggccctgcaatgtactttggattgatgggcga 277
Query: 823 tggccagcccatcggtcgctacgacgacatgtgggcaggatggtgtgtgaaggtcatctg 882
||| ||||| || ||||||||||||||||||||||||||||||||| | ||||| || ||
Sbjct: 278 tggtcagcctattggtcgctacgacgacatgtgggcaggatggtgtatcaaggtaatttg 337
Query: 883 cgaccacctgagcctgggagtcaagactggcctgccatacatctggcacagcaaggctag 942
|||||||| || |||| || ||||| || || || ||||| ||||||||||| |||||
Sbjct: 338 tgaccacctaggcttgggtgtgaagacaggacttccttacatttggcacagcaaagctag 397
Query: 943 caaccccttcgttaacttgaagaaggaatacaagggcatcttctggcaggagga 996
||||| |||||||| |||||||| ||||||||||| ||||| ||||| |||||
Sbjct: 398 taaccctttcgttaatttgaagaaagaatacaaggggatcttttggcaagagga 451
>gb|CO368232.1|CO368232 RTK1_39_A02.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_39_A02_A029 5', mRNA sequence
Length = 865
Score = 178 bits (90), Expect = 5e-043
Identities = 243/294 (82%)
Strand = Plus / Plus
Query: 703 gaggtatgttgatgctgtcatgacaatccccaagggaaccttgttccccatgtgtggcat 762
||||||||||||||| || | ||||| |||||||| || |||||||| |||||||| ||
Sbjct: 69 gaggtatgttgatgcggtgttaacaattcccaagggtactttgttccctatgtgtgggat 128
Query: 763 gaaccttgccttcgacagggatctcattggccctgctatgtactttggtctcatgggtga 822
||| | ||||| || | || | || |||||||| ||||||||||| | ||||| ||
Sbjct: 129 gaatttggcctttgatcgagagttgataggccctgcaatgtactttggattgatgggcga 188
Query: 823 tggccagcccatcggtcgctacgacgacatgtgggcaggatggtgtgtgaaggtcatctg 882
||| ||||| || ||||||||||||||||||||||||||||||||| | ||||| || ||
Sbjct: 189 tggtcagcctattggtcgctacgacgacatgtgggcaggatggtgtatcaaggtaatttg 248
Query: 883 cgaccacctgagcctgggagtcaagactggcctgccatacatctggcacagcaaggctag 942
|||||||| || |||| || ||||| || || || ||||| ||||||||||| |||||
Sbjct: 249 tgaccacctaggcttgggtgtgaagacaggacttccttacatttggcacagcaaagctag 308
Query: 943 caaccccttcgttaacttgaagaaggaatacaagggcatcttctggcaggagga 996
||||| |||||||| |||||||| ||||||||||| ||||| ||||| |||||
Sbjct: 309 taaccctttcgttaatttgaagaaagaatacaaggggatcttttggcaagagga 362
>gb|CO368524.1|CO368524 RTK1_41_E01.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_41_E01_A029 3', mRNA sequence
Length = 874
Score = 178 bits (90), Expect = 5e-043
Identities = 243/294 (82%)
Strand = Plus / Minus
Query: 703 gaggtatgttgatgctgtcatgacaatccccaagggaaccttgttccccatgtgtggcat 762
||||||||||||||| || | ||||| |||||||| || |||||||| |||||||| ||
Sbjct: 468 gaggtatgttgatgcggtgttaacaattcccaagggtactttgttccctatgtgtgggat 409
Query: 763 gaaccttgccttcgacagggatctcattggccctgctatgtactttggtctcatgggtga 822
||| | ||||| || | || | || |||||||| ||||||||||| | ||||| ||
Sbjct: 408 gaatttggcctttgatcgagagttgataggccctgcaatgtactttggattgatgggcga 349
Query: 823 tggccagcccatcggtcgctacgacgacatgtgggcaggatggtgtgtgaaggtcatctg 882
||| ||||| || ||||||||||||||||||||||||||||||||| | ||||| || ||
Sbjct: 348 tggtcagcctattggtcgctacgacgacatgtgggcaggatggtgtatcaaggtaatttg 289
Query: 883 cgaccacctgagcctgggagtcaagactggcctgccatacatctggcacagcaaggctag 942
|||||||| || |||| || ||||| || || || ||||| ||||||||||| |||||
Sbjct: 288 tgaccacctaggcttgggtgtgaagacaggacttccttacatttggcacagcaaagctag 229
Query: 943 caaccccttcgttaacttgaagaaggaatacaagggcatcttctggcaggagga 996
||||| |||||||| |||||||| ||||||||||| ||||| ||||| |||||
Sbjct: 228 taaccctttcgttaatttgaagaaagaatacaaggggatcttttggcaagagga 175
Score = 109 bits (55), Expect = 3e-022
Identities = 148/179 (82%)
Strand = Plus / Minus
Query: 332 gacatcaaccgcatcctcgggcccaaggcctcctgcatctccttcaaggactccgcctgc 391
||||||||| | |||||||| || |||||||| ||||| || || |||||| ||| |||
Sbjct: 839 gacatcaacaggatcctcggcccgaaggcctcttgcatttcttttaaggacagcgcttgc 780
Query: 392 cgctgcttcggctacatggtctccaagaagaagtacatctacaccatcgacgacgactgc 451
|| |||||||| || |||||||| ||||| || || |||||||| || ||||| || ||
Sbjct: 779 cgttgcttcggatatatggtctcaaagaaaaaatatatctacacaattgacgatgattgt 720
Query: 452 ttcgttgccaaggacccatctggcaaggatatcaatgctcttgagcagcacatcaagaa 510
|| ||||| ||||| || ||||| ||||| ||||||||||| ||||||||||| |||||
Sbjct: 719 tttgttgcaaaggatccgtctgggaaggacatcaatgctctagagcagcacattaagaa 661
>gb|CX648263.1|CX648263 COLD1_27_C01.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_27_C01_A029 5', mRNA sequence
Length = 883
Score = 178 bits (90), Expect = 5e-043
Identities = 243/294 (82%)
Strand = Plus / Minus
Query: 703 gaggtatgttgatgctgtcatgacaatccccaagggaaccttgttccccatgtgtggcat 762
||||||||||||||| || | ||||| |||||||| || |||||||| |||||||| ||
Sbjct: 802 gaggtatgttgatgcggtgttaacaattcccaagggtactttgttccctatgtgtgggat 743
Query: 763 gaaccttgccttcgacagggatctcattggccctgctatgtactttggtctcatgggtga 822
||| | ||||| || | || | || |||||||| ||||||||||| | ||||| ||
Sbjct: 742 gaatttggcctttgatcgagagttgataggccctgcaatgtactttggattgatgggcga 683
Query: 823 tggccagcccatcggtcgctacgacgacatgtgggcaggatggtgtgtgaaggtcatctg 882
||| ||||| || ||||||||||||||||||||||||||||||||| | ||||| || ||
Sbjct: 682 tggtcagcctattggtcgctacgacgacatgtgggcaggatggtgtatcaaggtaatttg 623
Query: 883 cgaccacctgagcctgggagtcaagactggcctgccatacatctggcacagcaaggctag 942
|||||||| || |||| || ||||| || || || ||||| ||||||||||| |||||
Sbjct: 622 tgaccacctaggcttgggtgtgaagacaggacttccttacatttggcacagcaaagctag 563
Query: 943 caaccccttcgttaacttgaagaaggaatacaagggcatcttctggcaggagga 996
||||| |||||||| |||||||| ||||||||||| ||||| ||||| |||||
Sbjct: 562 taaccctttcgttaatttgaagaaagaatacaaggggatcttttggcaagagga 509
>gb|DR743426.1|DR743426 RTCU1_15_G02.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_15_G02_A029 5', mRNA sequence
Length = 802
Score = 178 bits (90), Expect = 5e-043
Identities = 243/294 (82%)
Strand = Plus / Plus
Query: 703 gaggtatgttgatgctgtcatgacaatccccaagggaaccttgttccccatgtgtggcat 762
||||||||||||||| || | ||||| |||||||| || |||||||| |||||||| ||
Sbjct: 24 gaggtatgttgatgcggtgttaacaattcccaagggtactttgttccctatgtgtgggat 83
Query: 763 gaaccttgccttcgacagggatctcattggccctgctatgtactttggtctcatgggtga 822
||| | ||||| || | || | || |||||||| ||||||||||| | ||||| ||
Sbjct: 84 gaatttggcctttgatcgagagttgataggccctgcaatgtactttggattgatgggcga 143
Query: 823 tggccagcccatcggtcgctacgacgacatgtgggcaggatggtgtgtgaaggtcatctg 882
||| ||||| || ||||||||||||||||||||||||||||||||| | ||||| || ||
Sbjct: 144 tggtcagcctattggtcgctacgacgacatgtgggcaggatggtgtatcaaggtaatttg 203
Query: 883 cgaccacctgagcctgggagtcaagactggcctgccatacatctggcacagcaaggctag 942
|||||||| || |||| || ||||| || || || ||||| ||||||||||| |||||
Sbjct: 204 tgaccacctaggcttgggtgtgaagacaggacttccttacatttggcacagcaaagctag 263
Query: 943 caaccccttcgttaacttgaagaaggaatacaagggcatcttctggcaggagga 996
||||| |||||||| |||||||| ||||||||||| ||||| ||||| |||||
Sbjct: 264 taaccctttcgttaatttgaagaaagaatacaaggggatcttttggcaagagga 317
>gb|DR743501.1|DR743501 RTCU1_16_G01.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_16_G01_A029 3', mRNA sequence
Length = 854
Score = 178 bits (90), Expect = 5e-043
Identities = 243/294 (82%)
Strand = Plus / Plus
Query: 703 gaggtatgttgatgctgtcatgacaatccccaagggaaccttgttccccatgtgtggcat 762
||||||||||||||| || | ||||| |||||||| || |||||||| |||||||| ||
Sbjct: 25 gaggtatgttgatgcggtgttaacaattcccaagggtactttgttccctatgtgtgggat 84
Query: 763 gaaccttgccttcgacagggatctcattggccctgctatgtactttggtctcatgggtga 822
||| | ||||| || | || | || |||||||| ||||||||||| | ||||| ||
Sbjct: 85 gaatttggcctttgatcgagagttgataggccctgcaatgtactttggattgatgggcga 144
Query: 823 tggccagcccatcggtcgctacgacgacatgtgggcaggatggtgtgtgaaggtcatctg 882
||| ||||| || ||||||||||||||||||||||||||||||||| | ||||| || ||
Sbjct: 145 tggtcagcctattggtcgctacgacgacatgtgggcaggatggtgtatcaaggtaatttg 204
Query: 883 cgaccacctgagcctgggagtcaagactggcctgccatacatctggcacagcaaggctag 942
|||||||| || |||| || ||||| || || || ||||| ||||||||||| |||||
Sbjct: 205 tgaccacctaggcttgggtgtgaagacaggacttccttacatttggcacagcaaagctag 264
Query: 943 caaccccttcgttaacttgaagaaggaatacaagggcatcttctggcaggagga 996
||||| |||||||| |||||||| ||||||||||| ||||| ||||| |||||
Sbjct: 265 taaccctttcgttaatttgaagaaagaatacaaggggatcttttggcaagagga 318
>gb|BE431361.1|BE431361 NXNV_181_C05_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_181_C05 5' similar to Arabidopsis thaliana
sequence At3g08900 reversibly glycosylated polypeptide-3
(RGP) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 581
Score = 174 bits (88), Expect = 7e-042
Identities = 238/288 (82%)
Strand = Plus / Plus
Query: 703 gaggtatgttgatgctgtcatgacaatccccaagggaaccttgttccccatgtgtggcat 762
||||||||||||||| || | ||||| |||||||| || |||||||| |||||||| ||
Sbjct: 139 gaggtatgttgatgcggtgttaacaattcccaagggtactttgttccctatgtgtgggat 198
Query: 763 gaaccttgccttcgacagggatctcattggccctgctatgtactttggtctcatgggtga 822
||| | ||||| || | || | || |||||||| ||||||||||| | ||||| ||
Sbjct: 199 gaatttggcctttgatcgagagttgataggccctgcaatgtactttggattgatgggcga 258
Query: 823 tggccagcccatcggtcgctacgacgacatgtgggcaggatggtgtgtgaaggtcatctg 882
||| ||||| || ||||||||||||||||||||||||||||||||| | ||||| || ||
Sbjct: 259 tggtcagcctattggtcgctacgacgacatgtgggcaggatggtgtatcaaggtaatttg 318
Query: 883 cgaccacctgagcctgggagtcaagactggcctgccatacatctggcacagcaaggctag 942
|||||||| || |||| || ||||| || || || ||||| ||||||||||| |||||
Sbjct: 319 tgaccacctaggcttgggtgtgaagacaggacttccttacatttggcacagcaaagctag 378
Query: 943 caaccccttcgttaacttgaagaaggaatacaagggcatcttctggca 990
||||| |||||||| |||||||| ||||||||||| ||||| |||||
Sbjct: 379 taaccctttcgttaatttgaagaaagaatacaaggggatcttttggca 426
>gb|CF394806.1|CF394806 RTDS2_7_G07.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_7_G07_A021 5', mRNA sequence
Length = 780
Score = 170 bits (86), Expect = 1e-040
Identities = 242/294 (82%)
Strand = Plus / Plus
Query: 703 gaggtatgttgatgctgtcatgacaatccccaagggaaccttgttccccatgtgtggcat 762
||||||||||||||| || | ||||| || ||||| || |||||||| |||||||| ||
Sbjct: 216 gaggtatgttgatgcggtgttaacaattcctaagggtactttgttccctatgtgtgggat 275
Query: 763 gaaccttgccttcgacagggatctcattggccctgctatgtactttggtctcatgggtga 822
||| | ||||| || | || | || |||||||| ||||||||||| | ||||| ||
Sbjct: 276 gaatttggcctttgatcgagagttgataggccctgcaatgtactttggattgatgggcga 335
Query: 823 tggccagcccatcggtcgctacgacgacatgtgggcaggatggtgtgtgaaggtcatctg 882
||| ||||| || ||||||||||||||||||||||||||||||||| | ||||| || ||
Sbjct: 336 tggtcagcctattggtcgctacgacgacatgtgggcaggatggtgtatcaaggtaatttg 395
Query: 883 cgaccacctgagcctgggagtcaagactggcctgccatacatctggcacagcaaggctag 942
|||||||| || |||| || ||||| || || || ||||| ||||||||||| |||||
Sbjct: 396 tgaccacctaggcttgggtgtgaagacaggacttccttacatttggcacagcaaagctag 455
Query: 943 caaccccttcgttaacttgaagaaggaatacaagggcatcttctggcaggagga 996
||||| |||||||| |||||||| ||||||||||| ||||| ||||| |||||
Sbjct: 456 taaccctttcgttaatttgaagaaagaatacaaggggatcttttggcaagagga 509
>gb|CO363177.1|CO363177 RTK1_8_C11.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_8_C11_A029 3', mRNA sequence
Length = 761
Score = 170 bits (86), Expect = 1e-040
Identities = 242/294 (82%)
Strand = Plus / Minus
Query: 703 gaggtatgttgatgctgtcatgacaatccccaagggaaccttgttccccatgtgtggcat 762
||||||||||||||| || | ||||| || ||||| || |||||||| |||||||| ||
Sbjct: 565 gaggtatgttgatgcggtgttaacaattcctaagggtactttgttccctatgtgtgggat 506
Query: 763 gaaccttgccttcgacagggatctcattggccctgctatgtactttggtctcatgggtga 822
||| | ||||| || | || | || |||||||| ||||||||||| | ||||| ||
Sbjct: 505 gaatttggcctttgatcgagagttgataggccctgcaatgtactttggattgatgggcga 446
Query: 823 tggccagcccatcggtcgctacgacgacatgtgggcaggatggtgtgtgaaggtcatctg 882
||| ||||| || ||||||||||||||||||||||||||||||||| | ||||| || ||
Sbjct: 445 tggtcagcctattggtcgctacgacgacatgtgggcaggatggtgtatcaaggtaatttg 386
Query: 883 cgaccacctgagcctgggagtcaagactggcctgccatacatctggcacagcaaggctag 942
|||||||| || |||| || ||||| || || || ||||| ||||||||||| |||||
Sbjct: 385 tgaccacctaggcttgggtgtgaagacaggacttccttacatttggcacagcaaagctag 326
Query: 943 caaccccttcgttaacttgaagaaggaatacaagggcatcttctggcaggagga 996
||||| |||||||| |||||||| ||||||||||| ||||| ||||| |||||
Sbjct: 325 taaccctttcgttaatttgaagaaagaatacaaggggatcttttggcaagagga 272
>gb|CX651731.1|CX651731 COLD1_54_A03.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_54_A03_A029 5', mRNA sequence
Length = 715
Score = 170 bits (86), Expect = 1e-040
Identities = 242/294 (82%)
Strand = Plus / Plus
Query: 703 gaggtatgttgatgctgtcatgacaatccccaagggaaccttgttccccatgtgtggcat 762
||||||||||||||| || | ||||| || ||||| || |||||||| |||||||| ||
Sbjct: 136 gaggtatgttgatgcggtgttaacaattcctaagggtactttgttccctatgtgtgggat 195
Query: 763 gaaccttgccttcgacagggatctcattggccctgctatgtactttggtctcatgggtga 822
||| | ||||| || | || | || |||||||| ||||||||||| | ||||| ||
Sbjct: 196 gaatttggcctttgatcgagagttgataggccctgcaatgtactttggattgatgggcga 255
Query: 823 tggccagcccatcggtcgctacgacgacatgtgggcaggatggtgtgtgaaggtcatctg 882
||| ||||| || ||||||||||||||||||||||||||||||||| | ||||| || ||
Sbjct: 256 tggtcagcctattggtcgctacgacgacatgtgggcaggatggtgtatcaaggtaatttg 315
Query: 883 cgaccacctgagcctgggagtcaagactggcctgccatacatctggcacagcaaggctag 942
|||||||| || |||| || ||||| || || || ||||| ||||||||||| |||||
Sbjct: 316 tgaccacctaggcttgggtgtgaagacaggacttccttacatttggcacagcaaagctag 375
Query: 943 caaccccttcgttaacttgaagaaggaatacaagggcatcttctggcaggagga 996
||||| |||||||| |||||||| ||||||||||| ||||| ||||| |||||
Sbjct: 376 taaccctttcgttaatttgaagaaagaatacaaggggatcttttggcaagagga 429
>gb|DR744286.1|DR744286 RTCU1_21_A08.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_21_A08_A029 5', mRNA sequence
Length = 436
Score = 170 bits (86), Expect = 1e-040
Identities = 242/294 (82%)
Strand = Plus / Plus
Query: 703 gaggtatgttgatgctgtcatgacaatccccaagggaaccttgttccccatgtgtggcat 762
||||||||||||||| || | ||||| |||||||| || |||||||| |||||||| ||
Sbjct: 81 gaggtatgttgatgcggtgttaacaattcccaagggtactttgttccctatgtgtgggat 140
Query: 763 gaaccttgccttcgacagggatctcattggccctgctatgtactttggtctcatgggtga 822
||| | ||||| || | || | || |||||||| ||||||||||| | ||||| ||
Sbjct: 141 gaatttggcctttgatcgagagttgataggccctgcaatgtactttggattgatgggcga 200
Query: 823 tggccagcccatcggtcgctacgacgacatgtgggcaggatggtgtgtgaaggtcatctg 882
||| ||||| || ||||||||||||||||||||||||||||||||| | ||||| || ||
Sbjct: 201 tggtcagcctataggtcgctacgacgacatgtgggcaggatggtgtatcaaggtaatttg 260
Query: 883 cgaccacctgagcctgggagtcaagactggcctgccatacatctggcacagcaaggctag 942
|||||||| || |||| || ||||| || || || ||||| |||||||||| |||||
Sbjct: 261 tgaccacctaggcttgggtgtgaagacaggacttccttacatttggcacagcagagctag 320
Query: 943 caaccccttcgttaacttgaagaaggaatacaagggcatcttctggcaggagga 996
||||| |||||||| |||||||| ||||||||||| ||||| ||||| |||||
Sbjct: 321 taaccctttcgttaatttgaagaaagaatacaaggggatcttttggcaagagga 374
>gb|BQ634599.1|BQ634599 NXRV070_H09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV070_H09 5' similar to Arabidopsis thaliana
sequence At3g02230 reversibly glycosylated polypeptide-1
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 681
Score = 167 bits (84), Expect = 2e-039
Identities = 228/276 (82%)
Strand = Plus / Plus
Query: 703 gaggtatgttgatgctgtcatgacaatccccaagggaaccttgttccccatgtgtggcat 762
||||||||||||||| || | ||||| |||||||| || |||||||| |||||||| ||
Sbjct: 116 gaggtatgttgatgcggtgttaacaattcccaagggtactttgttccctatgtgtgggat 175
Query: 763 gaaccttgccttcgacagggatctcattggccctgctatgtactttggtctcatgggtga 822
||| | ||||| || | || | || |||||||| ||||||||||| | ||||| ||
Sbjct: 176 gaatttggcctttgatcgagagttgataggccctgcaatgtactttggattgatgggcga 235
Query: 823 tggccagcccatcggtcgctacgacgacatgtgggcaggatggtgtgtgaaggtcatctg 882
||| ||||| || ||||||||||||||||||||||||||||||||| | ||||| || ||
Sbjct: 236 tggtcagcctattggtcgctacgacgacatgtgggcaggatggtgtatcaaggtaatttg 295
Query: 883 cgaccacctgagcctgggagtcaagactggcctgccatacatctggcacagcaaggctag 942
|||||||| || |||| || ||||| || || || ||||| ||||||||||| |||||
Sbjct: 296 tgaccacctaggcttgggtgtgaagacaggacttccttacatttggcacagcaaagctag 355
Query: 943 caaccccttcgttaacttgaagaaggaatacaaggg 978
||||| |||||||| |||||||| |||||||||||
Sbjct: 356 taaccctttcgttaatttgaagaaagaatacaaggg 391
>gb|CO160140.1|CO160140 FLD1_19_B05.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_19_B05_A029 3', mRNA sequence
Length = 793
Score = 167 bits (84), Expect = 2e-039
Identities = 225/272 (82%)
Strand = Plus / Plus
Query: 725 acaatccccaagggaaccttgttccccatgtgtggcatgaaccttgccttcgacagggat 784
||||| |||||||| || |||||||| |||||||| ||||| | ||||| || | ||
Sbjct: 7 acaattcccaagggtactttgttccctatgtgtgggatgaatttggcctttgatcgagag 66
Query: 785 ctcattggccctgctatgtactttggtctcatgggtgatggccagcccatcggtcgctac 844
| || |||||||| ||||||||||| | ||||| ||||| ||||| || |||||||||
Sbjct: 67 ttgataggccctgcaatgtactttggattgatgggcgatggtcagcctattggtcgctac 126
Query: 845 gacgacatgtgggcaggatggtgtgtgaaggtcatctgcgaccacctgagcctgggagtc 904
|||||||||||||||||||||||| | ||||| || || |||||||| || |||| ||
Sbjct: 127 gacgacatgtgggcaggatggtgtatcaaggtaatttgtgaccacctaggcttgggtgtg 186
Query: 905 aagactggcctgccatacatctggcacagcaaggctagcaaccccttcgttaacttgaag 964
||||| || || || ||||| ||||||||||| ||||| ||||| |||||||| ||||||
Sbjct: 187 aagacaggacttccttacatttggcacagcaaagctagtaaccctttcgttaatttgaag 246
Query: 965 aaggaatacaagggcatcttctggcaggagga 996
|| ||||||||||| ||||| ||||| |||||
Sbjct: 247 aaagaatacaaggggatcttttggcaagagga 278
>gb|CO361051.1|CO361051 NDL2_2_G09.b1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_2_G09_A029 3', mRNA sequence
Length = 813
Score = 167 bits (84), Expect = 2e-039
Identities = 225/272 (82%)
Strand = Plus / Plus
Query: 725 acaatccccaagggaaccttgttccccatgtgtggcatgaaccttgccttcgacagggat 784
||||| |||||||| || |||||||| |||||||| ||||| | ||||| || | ||
Sbjct: 6 acaattcccaagggtactttgttccctatgtgtgggatgaatttggcctttgatcgagag 65
Query: 785 ctcattggccctgctatgtactttggtctcatgggtgatggccagcccatcggtcgctac 844
| || |||||||| ||||||||||| | ||||| ||||| ||||| || |||||||||
Sbjct: 66 ttgataggccctgcaatgtactttggattgatgggcgatggtcagcctattggtcgctac 125
Query: 845 gacgacatgtgggcaggatggtgtgtgaaggtcatctgcgaccacctgagcctgggagtc 904
|||||||||||||||||||||||| | ||||| || || |||||||| || |||| ||
Sbjct: 126 gacgacatgtgggcaggatggtgtatcaaggtaatttgtgaccacctaggcttgggtgtg 185
Query: 905 aagactggcctgccatacatctggcacagcaaggctagcaaccccttcgttaacttgaag 964
||||| || || || ||||| ||||||||||| ||||| ||||| |||||||| ||||||
Sbjct: 186 aagacaggacttccttacatttggcacagcaaagctagtaaccctttcgttaatttgaag 245
Query: 965 aaggaatacaagggcatcttctggcaggagga 996
|| ||||||||||| ||||| ||||| |||||
Sbjct: 246 aaagaatacaaggggatcttttggcaagagga 277
>gb|DR744218.1|DR744218 RTCU1_21_A08.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_21_A08_A029 3', mRNA sequence
Length = 812
Score = 167 bits (84), Expect = 2e-039
Identities = 225/272 (82%)
Strand = Plus / Plus
Query: 725 acaatccccaagggaaccttgttccccatgtgtggcatgaaccttgccttcgacagggat 784
||||| |||||||| || |||||||| |||||||| ||||| | ||||| || | ||
Sbjct: 7 acaattcccaagggtactttgttccctatgtgtgggatgaatttggcctttgatcgagag 66
Query: 785 ctcattggccctgctatgtactttggtctcatgggtgatggccagcccatcggtcgctac 844
| || |||||||| ||||||||||| | ||||| ||||| ||||| || |||||||||
Sbjct: 67 ttgataggccctgcaatgtactttggattgatgggcgatggtcagcctattggtcgctac 126
Query: 845 gacgacatgtgggcaggatggtgtgtgaaggtcatctgcgaccacctgagcctgggagtc 904
|||||||||||||||||||||||| | ||||| || || |||||||| || |||| ||
Sbjct: 127 gacgacatgtgggcaggatggtgtatcaaggtaatttgtgaccacctaggcttgggtgtg 186
Query: 905 aagactggcctgccatacatctggcacagcaaggctagcaaccccttcgttaacttgaag 964
||||| || || || ||||| ||||||||||| ||||| ||||| |||||||| ||||||
Sbjct: 187 aagacaggacttccttacatttggcacagcaaagctagtaaccctttcgttaatttgaag 246
Query: 965 aaggaatacaagggcatcttctggcaggagga 996
|| ||||||||||| ||||| ||||| |||||
Sbjct: 247 aaagaatacaaggggatcttttggcaagagga 278
>gb|BX252112.1|BX252112 BX252112 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP059H10, mRNA sequence
Length = 721
Score = 163 bits (82), Expect = 3e-038
Identities = 175/206 (84%)
Strand = Plus / Plus
Query: 791 ggccctgctatgtactttggtctcatgggtgatggccagcccatcggtcgctacgacgac 850
|||||||| ||||||||||| | ||||| ||||| ||||| || |||||||||||||||
Sbjct: 26 ggccctgcaatgtactttggattgatgggcgatggtcagcctattggtcgctacgacgac 85
Query: 851 atgtgggcaggatggtgtgtgaaggtcatctgcgaccacctgagcctgggagtcaagact 910
|||||||||||||||||||| ||||| || || |||||||| || |||| || |||||
Sbjct: 86 atgtgggcaggatggtgtgtaaaggtaatttgtgaccacctaggcttgggtgtgaagaca 145
Query: 911 ggcctgccatacatctggcacagcaaggctagcaaccccttcgttaacttgaagaaggaa 970
|| || || ||||| ||||||||||| ||||| ||||| |||||||| |||||||| ||
Sbjct: 146 ggacttccttacatttggcacagcaaagctagtaaccctttcgttaatttgaagaaagag 205
Query: 971 tacaagggcatcttctggcaggagga 996
|||||||| ||||| ||||| |||||
Sbjct: 206 tacaaggggatcttttggcaagagga 231
>gb|BM492953.1|BM492953 NXRV_032_F02_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_032_F02 5' similar to Arabidopsis thaliana
sequence At3g08900 reversibly glycosylated polypeptide-3
(RGP) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 404
Score = 163 bits (82), Expect = 3e-038
Identities = 175/206 (84%)
Strand = Plus / Plus
Query: 791 ggccctgctatgtactttggtctcatgggtgatggccagcccatcggtcgctacgacgac 850
|||||||| ||||||||||| | ||||| ||||| ||||| || |||||||||||||||
Sbjct: 12 ggccctgcaatgtactttggattgatgggcgatggtcagcctattggtcgctacgacgac 71
Query: 851 atgtgggcaggatggtgtgtgaaggtcatctgcgaccacctgagcctgggagtcaagact 910
|||||||||||||||||| | ||||| || || |||||||| || |||| || |||||
Sbjct: 72 atgtgggcaggatggtgtatcaaggtaatttgtgaccacctaggcttgggtgtgaagaca 131
Query: 911 ggcctgccatacatctggcacagcaaggctagcaaccccttcgttaacttgaagaaggaa 970
|| || || ||||| ||||||||||| ||||| ||||| |||||||| |||||||| |||
Sbjct: 132 ggacttccttacatttggcacagcaaagctagtaaccctttcgttaatttgaagaaagaa 191
Query: 971 tacaagggcatcttctggcaggagga 996
|||||||| ||||| ||||| |||||
Sbjct: 192 tacaaggggatcttttggcaagagga 217
>gb|CF390894.1|CF390894 RTDR3_2_D09.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_2_D09_A022 5', mRNA
sequence
Length = 789
Score = 163 bits (82), Expect = 3e-038
Identities = 175/206 (84%)
Strand = Plus / Minus
Query: 791 ggccctgctatgtactttggtctcatgggtgatggccagcccatcggtcgctacgacgac 850
|||||||| ||||||||||| | ||||| ||||| ||||| || |||||||||||||||
Sbjct: 685 ggccctgcaatgtactttggattgatgggcgatggtcagcctattggtcgctacgacgac 626
Query: 851 atgtgggcaggatggtgtgtgaaggtcatctgcgaccacctgagcctgggagtcaagact 910
|||||||||||||||||| | ||||| || || |||||||| || |||| || |||||
Sbjct: 625 atgtgggcaggatggtgtatcaaggtaatttgtgaccacctaggcttgggtgtgaagaca 566
Query: 911 ggcctgccatacatctggcacagcaaggctagcaaccccttcgttaacttgaagaaggaa 970
|| || || ||||| ||||||||||| ||||| ||||| |||||||| |||||||| |||
Sbjct: 565 ggacttccttacatttggcacagcaaagctagtaaccctttcgttaatttgaagaaagaa 506
Query: 971 tacaagggcatcttctggcaggagga 996
|||||||| ||||| ||||| |||||
Sbjct: 505 tacaaggggatcttttggcaagagga 480
>gb|CO174564.1|CO174564 NDL1_44_F10.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_44_F10_A029 5', mRNA sequence
Length = 764
Score = 163 bits (82), Expect = 3e-038
Identities = 175/206 (84%)
Strand = Plus / Minus
Query: 791 ggccctgctatgtactttggtctcatgggtgatggccagcccatcggtcgctacgacgac 850
|||||||| ||||||||||| | ||||| ||||| ||||| || |||||||||||||||
Sbjct: 720 ggccctgcaatgtactttggattgatgggcgatggtcagcctattggtcgctacgacgac 661
Query: 851 atgtgggcaggatggtgtgtgaaggtcatctgcgaccacctgagcctgggagtcaagact 910
|||||||||||||||||| | ||||| || || |||||||| || |||| || |||||
Sbjct: 660 atgtgggcaggatggtgtatcaaggtaatttgtgaccacctaggcttgggtgtgaagaca 601
Query: 911 ggcctgccatacatctggcacagcaaggctagcaaccccttcgttaacttgaagaaggaa 970
|| || || ||||| ||||||||||| ||||| ||||| |||||||| |||||||| |||
Sbjct: 600 ggacttccttacatttggcacagcaaagctagtaaccctttcgttaatttgaagaaagaa 541
Query: 971 tacaagggcatcttctggcaggagga 996
|||||||| ||||| ||||| |||||
Sbjct: 540 tacaaggggatcttttggcaagagga 515
>gb|CO363253.1|CO363253 RTK1_8_C11.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_8_C11_A029 5', mRNA sequence
Length = 780
Score = 163 bits (82), Expect = 3e-038
Identities = 175/206 (84%)
Strand = Plus / Minus
Query: 791 ggccctgctatgtactttggtctcatgggtgatggccagcccatcggtcgctacgacgac 850
|||||||| ||||||||||| | ||||| ||||| ||||| || |||||||||||||||
Sbjct: 710 ggccctgcaatgtactttggattgatgggcgatggtcagcctattggtcgctacgacgac 651
Query: 851 atgtgggcaggatggtgtgtgaaggtcatctgcgaccacctgagcctgggagtcaagact 910
|||||||||||||||||| | ||||| || || |||||||| || |||| || |||||
Sbjct: 650 atgtgggcaggatggtgtatcaaggtaatttgtgaccacctaggcttgggtgtgaagaca 591
Query: 911 ggcctgccatacatctggcacagcaaggctagcaaccccttcgttaacttgaagaaggaa 970
|| || || ||||| ||||||||||| ||||| ||||| |||||||| |||||||| |||
Sbjct: 590 ggacttccttacatttggcacagcaaagctagtaaccctttcgttaatttgaagaaagaa 531
Query: 971 tacaagggcatcttctggcaggagga 996
|||||||| ||||| ||||| |||||
Sbjct: 530 tacaaggggatcttttggcaagagga 505
>gb|CO368153.1|CO368153 RTK1_39_A02.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_39_A02_A029 3', mRNA sequence
Length = 783
Score = 163 bits (82), Expect = 3e-038
Identities = 175/206 (84%)
Strand = Plus / Plus
Query: 791 ggccctgctatgtactttggtctcatgggtgatggccagcccatcggtcgctacgacgac 850
|||||||| ||||||||||| | ||||| ||||| ||||| || |||||||||||||||
Sbjct: 45 ggccctgcaatgtactttggattgatgggcgatggtcagcctattggtcgctacgacgac 104
Query: 851 atgtgggcaggatggtgtgtgaaggtcatctgcgaccacctgagcctgggagtcaagact 910
|||||||||||||||||| | ||||| || || |||||||| || |||| || |||||
Sbjct: 105 atgtgggcaggatggtgtatcaaggtaatttgtgaccacctaggcttgggtgtgaagaca 164
Query: 911 ggcctgccatacatctggcacagcaaggctagcaaccccttcgttaacttgaagaaggaa 970
|| || || ||||| ||||||||||| ||||| ||||| |||||||| |||||||| |||
Sbjct: 165 ggacttccttacatttggcacagcaaagctagtaaccctttcgttaatttgaagaaagaa 224
Query: 971 tacaagggcatcttctggcaggagga 996
|||||||| ||||| ||||| |||||
Sbjct: 225 tacaaggggatcttttggcaagagga 250
>gb|CX651023.1|CX651023 COLD1_49_D10.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_49_D10_A029 5', mRNA sequence
Length = 482
Score = 163 bits (82), Expect = 3e-038
Identities = 241/294 (81%)
Strand = Plus / Plus
Query: 703 gaggtatgttgatgctgtcatgacaatccccaagggaaccttgttccccatgtgtggcat 762
||||||||||||||| || | ||||| |||||||| || |||||||| |||||||| ||
Sbjct: 143 gaggtatgttgatgcggtgttaacaattcccaagggtactttgttccctatgtgtgggat 202
Query: 763 gaaccttgccttcgacagggatctcattggccctgctatgtactttggtctcatgggtga 822
||| | ||||| || | || | || |||||||| ||||||||||| | ||||| ||
Sbjct: 203 gaatttggcctttgatcgagagttgataggccctgcaatgtactttggattgatgggcga 262
Query: 823 tggccagcccatcggtcgctacgacgacatgtgggcaggatggtgtgtgaaggtcatctg 882
||| ||||| || ||||||||||||||||||||||||||||||||| | ||||| || ||
Sbjct: 263 tggtcagcctattggtcgctacgacgacatgtgggcaggatggtgtatcaaggtaatttg 322
Query: 883 cgaccacctgagcctgggagtcaagactggcctgccatacatctggcacagcaaggctag 942
|||||||| || |||| || ||||| || || || ||||| ||||||||||| |||||
Sbjct: 323 tgaccacctaggcttgggtgtgaagacaggacttccttacatttggcacagcaaagctag 382
Query: 943 caaccccttcgttaacttgaagaaggaatacaagggcatcttctggcaggagga 996
||||| |||||||| |||||||| |||||||| | ||||| ||||| |||||
Sbjct: 383 taaccctttcgttaatttgaagaaagaatacaaaaggatcttttggcaagagga 436
>gb|DR101850.1|DR101850 STRR1_76_F09.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_76_F09_A033 3', mRNA sequence
Length = 786
Score = 163 bits (82), Expect = 3e-038
Identities = 175/206 (84%)
Strand = Plus / Plus
Query: 791 ggccctgctatgtactttggtctcatgggtgatggccagcccatcggtcgctacgacgac 850
|||||||| ||||||||||| | ||||| ||||| ||||| || |||||||||||||||
Sbjct: 45 ggccctgcaatgtactttggattgatgggcgatggtcagcctattggtcgctacgacgac 104
Query: 851 atgtgggcaggatggtgtgtgaaggtcatctgcgaccacctgagcctgggagtcaagact 910
|||||||||||||||||| | ||||| || || |||||||| || |||| || |||||
Sbjct: 105 atgtgggcaggatggtgtatcaaggtaatttgtgaccacctaggcttgggtgtgaagaca 164
Query: 911 ggcctgccatacatctggcacagcaaggctagcaaccccttcgttaacttgaagaaggaa 970
|| || || ||||| ||||||||||| ||||| ||||| |||||||| |||||||| |||
Sbjct: 165 ggacttccttacatttggcacagcaaagctagtaaccctttcgttaatttgaagaaagaa 224
Query: 971 tacaagggcatcttctggcaggagga 996
|||||||| ||||| ||||| |||||
Sbjct: 225 tacaaggggatcttttggcaagagga 250
>gb|DR101927.1|DR101927 STRR1_76_F09.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_76_F09_A033 5', mRNA sequence
Length = 478
Score = 163 bits (82), Expect = 3e-038
Identities = 175/206 (84%)
Strand = Plus / Plus
Query: 791 ggccctgctatgtactttggtctcatgggtgatggccagcccatcggtcgctacgacgac 850
|||||||| ||||||||||| | ||||| ||||| ||||| || |||||||||||||||
Sbjct: 62 ggccctgcaatgtactttggattgatgggcgatggtcagcctattggtcgctacgacgac 121
Query: 851 atgtgggcaggatggtgtgtgaaggtcatctgcgaccacctgagcctgggagtcaagact 910
|||||||||||||||||| | ||||| || || |||||||| || |||| || |||||
Sbjct: 122 atgtgggcaggatggtgtatcaaggtaatttgtgaccacctaggcttgggtgtgaagaca 181
Query: 911 ggcctgccatacatctggcacagcaaggctagcaaccccttcgttaacttgaagaaggaa 970
|| || || ||||| ||||||||||| ||||| ||||| |||||||| |||||||| |||
Sbjct: 182 ggacttccttacatttggcacagcaaagctagtaaccctttcgttaatttgaagaaagaa 241
Query: 971 tacaagggcatcttctggcaggagga 996
|||||||| ||||| ||||| |||||
Sbjct: 242 tacaaggggatcttttggcaagagga 267
>gb|DR388669.1|DR388669 RTHG1_29_F04.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_29_F04_A029 5', mRNA sequence
Length = 724
Score = 163 bits (82), Expect = 3e-038
Identities = 175/206 (84%)
Strand = Plus / Plus
Query: 791 ggccctgctatgtactttggtctcatgggtgatggccagcccatcggtcgctacgacgac 850
|||||||| ||||||||||| | ||||| ||||| ||||| || |||||||||||||||
Sbjct: 1 ggccctgcaatgtactttggattgatgggcgatggtcagcctattggtcgctacgacgac 60
Query: 851 atgtgggcaggatggtgtgtgaaggtcatctgcgaccacctgagcctgggagtcaagact 910
|||||||||||||||||| | ||||| || || |||||||| || |||| || |||||
Sbjct: 61 atgtgggcaggatggtgtatcaaggtaatttgtgaccacctaggcttgggtgtgaagaca 120
Query: 911 ggcctgccatacatctggcacagcaaggctagcaaccccttcgttaacttgaagaaggaa 970
|| || || ||||| ||||||||||| ||||| ||||| |||||||| |||||||| |||
Sbjct: 121 ggacttccttacatttggcacagcaaagctagtaaccctttcgttaatttgaagaaagaa 180
Query: 971 tacaagggcatcttctggcaggagga 996
|||||||| ||||| ||||| |||||
Sbjct: 181 tacaaggggatcttttggcaagagga 206
>gb|BX253257.1|BX253257 BX253257 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP080D03, mRNA sequence
Length = 702
Score = 155 bits (78), Expect = 7e-036
Identities = 174/206 (84%)
Strand = Plus / Plus
Query: 791 ggccctgctatgtactttggtctcatgggtgatggccagcccatcggtcgctacgacgac 850
|||||||| ||||||||||| | ||||| ||||| ||||| || |||||||||||||||
Sbjct: 75 ggccctgcaatgtactttggattgatgggcgatggtcagcctattggtcgctacgacgac 134
Query: 851 atgtgggcaggatggtgtgtgaaggtcatctgcgaccacctgagcctgggagtcaagact 910
|||||||| ||||||||||| ||||| || || |||||||| || |||| || |||||
Sbjct: 135 atgtgggcgggatggtgtgtaaaggtaatttgtgaccacctaggcttgggtgtgaagaca 194
Query: 911 ggcctgccatacatctggcacagcaaggctagcaaccccttcgttaacttgaagaaggaa 970
|| || || ||||| ||||||||||| ||||| ||||| |||||||| |||||||| ||
Sbjct: 195 ggacttccttacatttggcacagcaaagctagtaaccctttcgttaatttgaagaaagag 254
Query: 971 tacaagggcatcttctggcaggagga 996
|||||||| ||||| ||||| |||||
Sbjct: 255 tacaaggggatcttttggcaagagga 280
>gb|BX254059.1|BX254059 BX254059 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP092G06, mRNA sequence
Length = 685
Score = 155 bits (78), Expect = 7e-036
Identities = 174/206 (84%)
Strand = Plus / Plus
Query: 791 ggccctgctatgtactttggtctcatgggtgatggccagcccatcggtcgctacgacgac 850
|||||||| ||||||||||| | ||||| ||||| ||||| || |||||||||||||||
Sbjct: 97 ggccctgcaatgtactttggattgatgggcgatggtcagcctattggtcgctacgacgac 156
Query: 851 atgtgggcaggatggtgtgtgaaggtcatctgcgaccacctgagcctgggagtcaagact 910
|||||||| ||||||||||| ||||| || || |||||||| || |||| || |||||
Sbjct: 157 atgtgggcgggatggtgtgtaaaggtaatttgtgaccacctaggcttgggtgtgaagaca 216
Query: 911 ggcctgccatacatctggcacagcaaggctagcaaccccttcgttaacttgaagaaggaa 970
|| || || ||||| ||||||||||| ||||| ||||| |||||||| |||||||| ||
Sbjct: 217 ggacttccttacatttggcacagcaaagctagtaaccctttcgttaatttgaagaaagag 276
Query: 971 tacaagggcatcttctggcaggagga 996
|||||||| ||||| ||||| |||||
Sbjct: 277 tacaaggggatcttttggcaagagga 302
>gb|BM367847.1|BM367847 NXLV_058_H10_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_058_H10 5' similar to Arabidopsis thaliana
sequence At3g08900 reversibly glycosylated polypeptide-3
(RGP) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 426
Score = 155 bits (78), Expect = 7e-036
Identities = 174/206 (84%)
Strand = Plus / Plus
Query: 791 ggccctgctatgtactttggtctcatgggtgatggccagcccatcggtcgctacgacgac 850
|||||||| ||||||||||| | ||||| ||||| ||||| || |||||||||||||||
Sbjct: 51 ggccctgcaatgtactttggattgatgggcgatggtcagcctattggtcgctacgacgac 110
Query: 851 atgtgggcaggatggtgtgtgaaggtcatctgcgaccacctgagcctgggagtcaagact 910
| |||||||||||||||| | ||||| || || |||||||| || |||| || |||||
Sbjct: 111 acgtgggcaggatggtgtatcaaggtaatttgtgaccacctaggcttgggtgtgaagaca 170
Query: 911 ggcctgccatacatctggcacagcaaggctagcaaccccttcgttaacttgaagaaggaa 970
|| || || ||||| ||||||||||| ||||| ||||| |||||||| |||||||| |||
Sbjct: 171 ggacttccttacatttggcacagcaaagctagtaaccctttcgttaatttgaagaaagaa 230
Query: 971 tacaagggcatcttctggcaggagga 996
|||||||| ||||| ||||| |||||
Sbjct: 231 tacaaggggatcttttggcaagagga 256
>gb|CF473917.1|CF473917 RTWW2_19_F07.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_19_F07_A021 5', mRNA sequence
Length = 763
Score = 155 bits (78), Expect = 7e-036
Identities = 174/206 (84%)
Strand = Plus / Minus
Query: 791 ggccctgctatgtactttggtctcatgggtgatggccagcccatcggtcgctacgacgac 850
|||||||| ||||||||||| | ||||| ||||| ||||| || |||||||||||||||
Sbjct: 708 ggccctgcaatgtactttggattgatgggcgatggtcagcctattggtcgctacgacgac 649
Query: 851 atgtgggcaggatggtgtgtgaaggtcatctgcgaccacctgagcctgggagtcaagact 910
|||||||||||||||||| | ||||| || || |||||||| || |||| || |||||
Sbjct: 648 atgtgggcaggatggtgtatcaaggtaatttgtgaccacctaggcttgggtgtgaagaca 589
Query: 911 ggcctgccatacatctggcacagcaaggctagcaaccccttcgttaacttgaagaaggaa 970
|| || || ||||| ||||||||||| ||||| ||||| || ||||| |||||||| |||
Sbjct: 588 ggacttccttacatttggcacagcaaagctagtaacccttttgttaatttgaagaaagaa 529
Query: 971 tacaagggcatcttctggcaggagga 996
|||||||| ||||| ||||| |||||
Sbjct: 528 tacaaggggatcttttggcaagagga 503
>gb|DR385269.1|DR385269 RTHG1_7_D09.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_7_D09_A029 5', mRNA sequence
Length = 786
Score = 153 bits (77), Expect = 3e-035
Identities = 167/197 (84%)
Strand = Plus / Minus
Query: 800 atgtactttggtctcatgggtgatggccagcccatcggtcgctacgacgacatgtgggca 859
||||||||||| | ||||| ||||| ||||| || ||||||||||||||||||||||||
Sbjct: 785 atgtactttggattgatgggcgatggtcagcctattggtcgctacgacgacatgtgggca 726
Query: 860 ggatggtgtgtgaaggtcatctgcgaccacctgagcctgggagtcaagactggcctgcca 919
||||||||| | ||||| || || |||||||| || |||| || ||||| || || ||
Sbjct: 725 ggatggtgtatcaaggtaatttgtgaccacctaggcttgggtgtgaagacaggacttcct 666
Query: 920 tacatctggcacagcaaggctagcaaccccttcgttaacttgaagaaggaatacaagggc 979
||||| ||||||||||| ||||| ||||| |||||||| |||||||| |||||||||||
Sbjct: 665 tacatttggcacagcaaagctagtaaccctttcgttaatttgaagaaagaatacaagggg 606
Query: 980 atcttctggcaggagga 996
||||| ||||| |||||
Sbjct: 605 atcttttggcaagagga 589
>gb|CF474787.1|CF474787 RTWW2_7_H09.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_7_H09_A021 5', mRNA sequence
Length = 698
Score = 147 bits (74), Expect = 2e-033
Identities = 173/206 (83%)
Strand = Plus / Plus
Query: 791 ggccctgctatgtactttggtctcatgggtgatggccagcccatcggtcgctacgacgac 850
|||||||| ||||| ||||| | ||||| ||||| ||||| || |||||||||||||||
Sbjct: 6 ggccctgcaatgtattttggattgatgggcgatggtcagcctattggtcgctacgacgac 65
Query: 851 atgtgggcaggatggtgtgtgaaggtcatctgcgaccacctgagcctgggagtcaagact 910
|||||||||||||||||| | ||||| || || |||||||| || |||| || |||||
Sbjct: 66 atgtgggcaggatggtgtatcaaggtaatttgtgaccacctaggcttgggtgtgaagaca 125
Query: 911 ggcctgccatacatctggcacagcaaggctagcaaccccttcgttaacttgaagaaggaa 970
|| || || ||||| ||||||||||| ||||| ||||| || ||||| |||||||| |||
Sbjct: 126 ggacttccttacatttggcacagcaaagctagtaacccttttgttaatttgaagaaagaa 185
Query: 971 tacaagggcatcttctggcaggagga 996
|||||||| ||||| ||||| |||||
Sbjct: 186 tacaaggggatcttttggcaagagga 211
>gb|DR097796.1|DR097796 STRR1_37_C05.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_37_C05_A033 3', mRNA sequence
Length = 712
Score = 147 bits (74), Expect = 2e-033
Identities = 155/182 (85%)
Strand = Plus / Plus
Query: 815 atgggtgatggccagcccatcggtcgctacgacgacatgtgggcaggatggtgtgtgaag 874
||||| ||||| ||||| || ||||||||||||||||||||||||||||||||| | |||
Sbjct: 5 atgggcgatggtcagcctattggtcgctacgacgacatgtgggcaggatggtgtatcaag 64
Query: 875 gtcatctgcgaccacctgagcctgggagtcaagactggcctgccatacatctggcacagc 934
|| || || |||||||| || |||| || ||||| || || || ||||| |||||||||
Sbjct: 65 gtaatttgtgaccacctaggcttgggtgtgaagacaggacttccttacatttggcacagc 124
Query: 935 aaggctagcaaccccttcgttaacttgaagaaggaatacaagggcatcttctggcaggag 994
|| ||||| ||||| |||||||| |||||||| ||||||||||| ||||| ||||| |||
Sbjct: 125 aaagctagtaaccctttcgttaatttgaagaaagaatacaaggggatcttttggcaagag 184
Query: 995 ga 996
||
Sbjct: 185 ga 186
>gb|DR385258.1|DR385258 RTHG1_7_C09.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_7_C09_A029 5', mRNA sequence
Length = 773
Score = 147 bits (74), Expect = 2e-033
Identities = 155/182 (85%)
Strand = Plus / Minus
Query: 815 atgggtgatggccagcccatcggtcgctacgacgacatgtgggcaggatggtgtgtgaag 874
||||| ||||| ||||| || ||||||||||||||||||||||||||||||||| | |||
Sbjct: 769 atgggcgatggtcagcctattggtcgctacgacgacatgtgggcaggatggtgtatcaag 710
Query: 875 gtcatctgcgaccacctgagcctgggagtcaagactggcctgccatacatctggcacagc 934
|| || || |||||||| || |||| || ||||| || || || ||||| |||||||||
Sbjct: 709 gtaatttgtgaccacctaggcttgggtgtgaagacaggacttccttacatttggcacagc 650
Query: 935 aaggctagcaaccccttcgttaacttgaagaaggaatacaagggcatcttctggcaggag 994
|| ||||| ||||| |||||||| |||||||| ||||||||||| ||||| ||||| |||
Sbjct: 649 aaagctagtaaccctttcgttaatttgaagaaagaatacaaggggatcttttggcaagag 590
Query: 995 ga 996
||
Sbjct: 589 ga 588
>gb|BX255461.1|BX255461 BX255461 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP006A08, mRNA sequence
Length = 613
Score = 143 bits (72), Expect = 2e-032
Identities = 150/176 (85%)
Strand = Plus / Plus
Query: 791 ggccctgctatgtactttggtctcatgggtgatggccagcccatcggtcgctacgacgac 850
|||||||| ||||||||||| | ||||| ||||| ||||| || |||||||||||||||
Sbjct: 433 ggccctgcaatgtactttggattgatgggcgatggtcagcctattggtcgctacgacgac 492
Query: 851 atgtgggcaggatggtgtgtgaaggtcatctgcgaccacctgagcctgggagtcaagact 910
|||||||||||||||||||| ||||| || || |||||||| || |||| || |||||
Sbjct: 493 atgtgggcaggatggtgtgtaaaggtaatttgtgaccacctaggcttgggtgtgaagaca 552
Query: 911 ggcctgccatacatctggcacagcaaggctagcaaccccttcgttaacttgaagaa 966
|| || || ||||| ||||||||||| ||||| ||||| |||||||| ||||||||
Sbjct: 553 ggacttccttacatttggcacagcaaagctagtaaccctttcgttaatttgaagaa 608
Score = 40.1 bits (20), Expect = 0.27
Identities = 56/68 (82%)
Strand = Plus / Plus
Query: 533 ttcttcttcaacaccctgtacgacccctaccgtgagggtgctgactttgtgcgtggatac 592
||||| ||||| |||||||| || || ||| | || ||||| |||||||| || || |||
Sbjct: 175 ttctttttcaataccctgtatgatccatacagagatggtgcagactttgttcgcggctac 234
Query: 593 cccttcag 600
||||||||
Sbjct: 235 cccttcag 242
>gb|DR101800.1|DR101800 STRR1_76_A01.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_76_A01_A033 3', mRNA sequence
Length = 711
Score = 143 bits (72), Expect = 2e-032
Identities = 150/176 (85%)
Strand = Plus / Plus
Query: 821 gatggccagcccatcggtcgctacgacgacatgtgggcaggatggtgtgtgaaggtcatc 880
||||| ||||| || ||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct: 4 gatggtcagcctattggtcgctacgacgacatgtgggcaggatggtgtatcaaggtaatt 63
Query: 881 tgcgaccacctgagcctgggagtcaagactggcctgccatacatctggcacagcaaggct 940
|| |||||||| || |||| || ||||| || || || ||||| ||||||||||| |||
Sbjct: 64 tgtgaccacctaggcttgggtgtgaagacaggacttccttacatttggcacagcaaagct 123
Query: 941 agcaaccccttcgttaacttgaagaaggaatacaagggcatcttctggcaggagga 996
|| ||||| |||||||| |||||||| ||||||||||| ||||| ||||| |||||
Sbjct: 124 agtaaccctttcgttaatttgaagaaagaatacaaggggatcttttggcaagagga 179
>gb|DR080582.1|DR080582 RTFEPL1_23_E12.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_23_E12_A029 5', mRNA sequence
Length = 657
Score = 139 bits (70), Expect = 4e-031
Identities = 145/170 (85%)
Strand = Plus / Plus
Query: 827 cagcccatcggtcgctacgacgacatgtgggcaggatggtgtgtgaaggtcatctgcgac 886
||||| || ||||||||||||||||||||||||||||||||| | ||||| || || |||
Sbjct: 3 cagcctattggtcgctacgacgacatgtgggcaggatggtgtatcaaggtaatttgtgac 62
Query: 887 cacctgagcctgggagtcaagactggcctgccatacatctggcacagcaaggctagcaac 946
||||| || |||| || ||||| || || || ||||| ||||||||||| ||||| |||
Sbjct: 63 cacctaggcttgggtgtgaagacaggacttccttacatttggcacagcaaagctagtaac 122
Query: 947 cccttcgttaacttgaagaaggaatacaagggcatcttctggcaggagga 996
|| |||||||| |||||||| ||||||||||| ||||| ||||| |||||
Sbjct: 123 cctttcgttaatttgaagaaagaatacaaggggatcttttggcaagagga 172
>gb|CO200246.1|CO200246 GEO2_6_F12.b1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_6_F12_A032 3', mRNA sequence
Length = 819
Score = 137 bits (69), Expect = 2e-030
Identities = 138/161 (85%)
Strand = Plus / Plus
Query: 836 ggtcgctacgacgacatgtgggcaggatggtgtgtgaaggtcatctgcgaccacctgagc 895
||||||||||||||||||||||||||||||||| | ||||| || || |||||||| ||
Sbjct: 2 ggtcgctacgacgacatgtgggcaggatggtgtatcaaggtaatttgtgaccacctaggc 61
Query: 896 ctgggagtcaagactggcctgccatacatctggcacagcaaggctagcaaccccttcgtt 955
|||| || ||||| || || || ||||| ||||||||||| ||||| ||||| ||||||
Sbjct: 62 ttgggtgtgaagacaggacttccttacatttggcacagcaaagctagtaaccctttcgtt 121
Query: 956 aacttgaagaaggaatacaagggcatcttctggcaggagga 996
|| |||||||| ||||||||||| ||||| ||||| |||||
Sbjct: 122 aatttgaagaaagaatacaaggggatcttttggcaagagga 162
>gb|DR023534.1|DR023534 STRS1_58_G04.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_58_G04_A034 3', mRNA sequence
Length = 685
Score = 137 bits (69), Expect = 2e-030
Identities = 138/161 (85%)
Strand = Plus / Plus
Query: 836 ggtcgctacgacgacatgtgggcaggatggtgtgtgaaggtcatctgcgaccacctgagc 895
||||||||||||||||||||||||||||||||| | ||||| || || |||||||| ||
Sbjct: 7 ggtcgctacgacgacatgtgggcaggatggtgtatcaaggtaatttgtgaccacctaggc 66
Query: 896 ctgggagtcaagactggcctgccatacatctggcacagcaaggctagcaaccccttcgtt 955
|||| || ||||| || || || ||||| ||||||||||| ||||| ||||| ||||||
Sbjct: 67 ttgggtgtgaagacaggacttccttacatttggcacagcaaagctagtaaccctttcgtt 126
Query: 956 aacttgaagaaggaatacaagggcatcttctggcaggagga 996
|| |||||||| ||||||||||| ||||| ||||| |||||
Sbjct: 127 aatttgaagaaagaatacaaggggatcttttggcaagagga 167
>gb|BX250805.1|BX250805 BX250805 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP041E03, mRNA sequence
Length = 650
Score = 135 bits (68), Expect = 6e-030
Identities = 146/172 (84%)
Strand = Plus / Plus
Query: 791 ggccctgctatgtactttggtctcatgggtgatggccagcccatcggtcgctacgacgac 850
|||||||| ||||||||||| | ||||| ||||| ||||| || |||||||||||||||
Sbjct: 479 ggccctgcaatgtactttggattgatgggcgatggtcagcctattggtcgctacgacgac 538
Query: 851 atgtgggcaggatggtgtgtgaaggtcatctgcgaccacctgagcctgggagtcaagact 910
|||||||||||||||||||| ||||| || || |||||||| || |||| || |||||
Sbjct: 539 atgtgggcaggatggtgtgtaaaggtaatttgtgaccacctaggcttgggtgtgaagaca 598
Query: 911 ggcctgccatacatctggcacagcaaggctagcaaccccttcgttaacttga 962
|| || || ||||| ||||||||||| ||||| ||||| |||||||| ||||
Sbjct: 599 ggacttccttacatttggcacagcaaagctagtaaccctttcgttaatttga 650
Score = 93.7 bits (47), Expect = 2e-017
Identities = 146/179 (81%)
Strand = Plus / Plus
Query: 332 gacatcaaccgcatcctcgggcccaaggcctcctgcatctccttcaaggactccgcctgc 391
||||||||| | |||||||| || || ||||||||||| || || |||||| || |||
Sbjct: 20 gacatcaacaggatcctcggcccgaaagcctcctgcatttcttttaaggacagtgcttgc 79
Query: 392 cgctgcttcggctacatggtctccaagaagaagtacatctacaccatcgacgacgactgc 451
|| |||||||| || |||||||| ||||| || || |||||||| || ||||| || ||
Sbjct: 80 cgatgcttcggatatatggtctcaaagaaaaaatatatctacacaattgacgatgattgt 139
Query: 452 ttcgttgccaaggacccatctggcaaggatatcaatgctcttgagcagcacatcaagaa 510
|| ||||| ||||| || ||||| ||||| ||||||||||| |||||||| || |||||
Sbjct: 140 tttgttgcaaaggatccgtctgggaaggacatcaatgctctagagcagcatattaagaa 198
>gb|CO362322.1|CO362322 RTK1_2_G07.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_2_G07_A029 5', mRNA sequence
Length = 364
Score = 133 bits (67), Expect = 2e-029
Identities = 220/271 (81%)
Strand = Plus / Plus
Query: 703 gaggtatgttgatgctgtcatgacaatccccaagggaaccttgttccccatgtgtggcat 762
||||||||||||||| || | ||||| |||||||| || |||||||| |||||||| ||
Sbjct: 80 gaggtatgttgatgcggtgttaacaattcccaagggtactttgttccctatgtgtgggat 139
Query: 763 gaaccttgccttcgacagggatctcattggccctgctatgtactttggtctcatgggtga 822
||| | ||||| || | || | || |||||||| ||||||||||| | ||||| ||
Sbjct: 140 gaatttggcctttgatcgagagttgataggccctgcaatgtactttggattgatgggcga 199
Query: 823 tggccagcccatcggtcgctacgacgacatgtgggcaggatggtgtgtgaaggtcatctg 882
||| ||||| || ||||||||| || || ||||||||||||||||| | ||||| || ||
Sbjct: 200 tggacagcctattggtcgctacaactacctgtgggcaggatggtgtatcaaggtaatttg 259
Query: 883 cgaccacctgagcctgggagtcaagactggcctgccatacatctggcacagcaaggctag 942
|||||||| || |||| || ||||| || || || ||||| ||||||||||| |||||
Sbjct: 260 tgaccacctaggcttgggtgtgaagacaggacttccttacatttggcacagcaaagctag 319
Query: 943 caaccccttcgttaacttgaagaaggaatac 973
||||| |||||||| |||||||| ||||||
Sbjct: 320 taaccctttcgttaatttgaagaaagaatac 350
>gb|DR058671.1|DR058671 RTNIT1_13_E08.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_13_E08_A029 3', mRNA sequence
Length = 656
Score = 133 bits (67), Expect = 2e-029
Identities = 136/159 (85%)
Strand = Plus / Plus
Query: 838 tcgctacgacgacatgtgggcaggatggtgtgtgaaggtcatctgcgaccacctgagcct 897
||||||||||||||||||||||||||||||| | ||||| || || |||||||| || |
Sbjct: 1 tcgctacgacgacatgtgggcaggatggtgtatcaaggtaatttgtgaccacctaggctt 60
Query: 898 gggagtcaagactggcctgccatacatctggcacagcaaggctagcaaccccttcgttaa 957
||| || ||||| || || || ||||| ||||||||||| ||||| ||||| ||||||||
Sbjct: 61 gggtgtgaagacaggacttccttacatttggcacagcaaagctagtaaccctttcgttaa 120
Query: 958 cttgaagaaggaatacaagggcatcttctggcaggagga 996
|||||||| ||||||||||| ||||| ||||| |||||
Sbjct: 121 tttgaagaaagaatacaaggggatcttttggcaagagga 159
>gb|DR119659.1|DR119659 RTMG1_24_D09.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_24_D09_A029 5', mRNA sequence
Length = 596
Score = 131 bits (66), Expect = 9e-029
Identities = 201/246 (81%)
Strand = Plus / Plus
Query: 703 gaggtatgttgatgctgtcatgacaatccccaagggaaccttgttccccatgtgtggcat 762
||||||||||||||| || | ||||| |||||||| || |||||||| |||||||| ||
Sbjct: 344 gaggtatgttgatgcggtgttaacaattcccaagggtactttgttccctatgtgtgggat 403
Query: 763 gaaccttgccttcgacagggatctcattggccctgctatgtactttggtctcatgggtga 822
||| | ||||| || | || | || |||||||| ||||||||||| | ||||| ||
Sbjct: 404 gaatttggcctttgatcgagagttgataggccctgcaatgtactttggattgatgggcga 463
Query: 823 tggccagcccatcggtcgctacgacgacatgtgggcaggatggtgtgtgaaggtcatctg 882
||| ||||| || ||||||||||||||||||||||||||||||||| | ||||| || ||
Sbjct: 464 tggtcagcctattggtcgctacgacgacatgtgggcaggatggtgtatcaaggtaatttg 523
Query: 883 cgaccacctgagcctgggagtcaagactggcctgccatacatctggcacagcaaggctag 942
|||||||| || |||| || ||||| || || || ||||| ||||||||||| |||||
Sbjct: 524 tgaccacctaggcttgggtgtgaagacaggacttccttacatttggcacagcaaagctag 583
Query: 943 caaccc 948
|||||
Sbjct: 584 taaccc 589
Score = 85.7 bits (43), Expect = 5e-015
Identities = 124/151 (82%)
Strand = Plus / Plus
Query: 360 cctcctgcatctccttcaaggactccgcctgccgctgcttcggctacatggtctccaaga 419
|||| ||||| || || |||||| ||| ||||| |||||||| || |||||||| ||||
Sbjct: 1 cctcttgcatttcttttaaggacagcgcttgccgttgcttcggatatatggtctcaaaga 60
Query: 420 agaagtacatctacaccatcgacgacgactgcttcgttgccaaggacccatctggcaagg 479
| || || |||||||| || ||||| || || || ||||| ||||| || ||||| ||||
Sbjct: 61 aaaaatatatctacacaattgacgatgattgttttgttgcaaaggatccgtctgggaagg 120
Query: 480 atatcaatgctcttgagcagcacatcaagaa 510
| ||||||||||| ||||||||||| |||||
Sbjct: 121 acatcaatgctctagagcagcacattaagaa 151
>gb|DR161098.1|DR161098 RTFE1_9_G07.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_9_G07_A029 5', mRNA sequence
Length = 794
Score = 127 bits (64), Expect = 1e-027
Identities = 274/344 (79%)
Strand = Plus / Plus
Query: 167 aaggacgagctcgacatcgtgatcccgacgatccgcaacctcgacttcctggagatgtgg 226
||||| ||||| ||||||||||| || |||||| | ||||| || || ||||| ||||||
Sbjct: 58 aaggatgagcttgacatcgtgatacccacgatcaggaacctggattttctggaaatgtgg 117
Query: 227 cggcccttcttccagccctaccacctcatcatcgtgcaggacggcgacccgaccaagacc 286
|||| ||||| |||| || || || || || |||||||| || || || | |||||
Sbjct: 118 aggcctttctttgagccatatcatcttattattgtgcaggatggggatccatcaaagaca 177
Query: 287 atcaaggtgcccgagggcttcgactacgagctctacaaccgcaacgacatcaaccgcatc 346
||| ||||| |||| || ||||| ||||| |||||| | || ||||||||| | |||
Sbjct: 178 atcgctgtgccaaagggttttgactatgagctttacaacagaaatgacatcaacaggatc 237
Query: 347 ctcgggcccaaggcctcctgcatctccttcaaggactccgcctgccgctgcttcggctac 406
||||| || |||||||| ||||| || || |||||| ||| ||||| |||||||| ||
Sbjct: 238 ctcggcccgaaggcctcttgcatttcttttaaggacagcgcttgccgttgcttcggatat 297
Query: 407 atggtctccaagaagaagtacatctacaccatcgacgacgactgcttcgttgccaaggac 466
|||||||| ||||| || || |||||||| || ||||| || || || ||||| |||||
Sbjct: 298 atggtctcaaagaaaaaatatatctacacaattgacgatgattgttttgttgcaaaggat 357
Query: 467 ccatctggcaaggatatcaatgctcttgagcagcacatcaagaa 510
|| ||||| ||||| ||||||||||| ||||||||||| |||||
Sbjct: 358 ccgtctgggaaggacatcaatgctctagagcagcacattaagaa 401
Score = 107 bits (54), Expect = 1e-021
Identities = 162/198 (81%)
Strand = Plus / Plus
Query: 703 gaggtatgttgatgctgtcatgacaatccccaagggaaccttgttccccatgtgtggcat 762
||||||||||||||| || | ||||| || ||||| || |||||||| |||||||| ||
Sbjct: 594 gaggtatgttgatgcggtgttaacaattcctaagggtactttgttccctatgtgtgggat 653
Query: 763 gaaccttgccttcgacagggatctcattggccctgctatgtactttggtctcatgggtga 822
||| | ||||| || | || | || |||||||| ||||||||||| | ||||| ||
Sbjct: 654 gaatttggcctttgatcgagagttgataggccctgcaatgtactttggattgatgggcga 713
Query: 823 tggccagcccatcggtcgctacgacgacatgtgggcaggatggtgtgtgaaggtcatctg 882
||| ||||| || ||||||||||||||||||||||||||||||||| | ||||| || ||
Sbjct: 714 tggtcagcctattggtcgctacgacgacatgtgggcaggatggtgtatcaaggtaatttg 773
Query: 883 cgaccacctgagcctggg 900
|||||||| ||| ||||
Sbjct: 774 tgaccacctaagcttggg 791
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 182,982
Number of Sequences: 355925
Number of extensions: 182982
Number of successful extensions: 47622
Number of sequences better than 0.5: 109
Number of HSP's better than 0.5 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47328
Number of HSP's gapped (non-prelim): 287
length of query: 1563
length of database: 217,277,237
effective HSP length: 20
effective length of query: 1543
effective length of database: 210,158,737
effective search space: 324274931191
effective search space used: 324274931191
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)