BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAC22h02.sg.3.6
(2204 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|BD236812.1| Materials and method for modification of pl... 133 3e-029
gb|DR693687.1|DR693687 EST1083776 Normalized pine embryo li... 127 2e-027
gb|DT638327.1|DT638327 EST1153258 Normalized pine embryo li... 127 2e-027
gb|DR684169.1|DR684169 EST1074246 Normalized pine embryo li... 113 3e-023
gb|DR687407.1|DR687407 EST1077489 Normalized pine embryo li... 105 8e-021
dbj|BD236808.1| Materials and method for modification of pl... 105 8e-021
dbj|BD236811.1| Materials and method for modification of pl... 82 1e-013
dbj|BD236813.1| Materials and method for modification of pl... 82 1e-013
gb|AW754575.1|AW754575 PC03H04 Pine TriplEx pollen cone lib... 74 3e-011
gb|CO159937.1|CO159937 FLD1_17_D09.b1_A029 Root flooded Pin... 74 3e-011
dbj|BD236809.1| Materials and method for modification of pl... 74 3e-011
dbj|BD236810.1| Materials and method for modification of pl... 74 3e-011
gb|DR081605.1|DR081605 RTFEPL1_30_H04.g1_A029 Roots plus ad... 72 1e-010
gb|DR078589.1|DR078589 RTFEPL1_5_D12.g1_A029 Roots plus add... 70 4e-010
gb|BX251976.1|BX251976 BX251976 Pinus pinaster differenciat... 66 7e-009
gb|BX679414.1|BX679414 BX679414 RS Pinus pinaster cDNA clon... 60 4e-007
gb|BF610181.1|BF610181 NXSI_055_F11_F NXSI (Nsf Xylem Side ... 46 0.006
>dbj|BD236812.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 530
Score = 133 bits (67), Expect = 3e-029
Identities = 262/327 (80%)
Strand = Plus / Plus
Query: 953 tgtggggtactgcacagctctttatgcatcctcgttacatgcatggcgctgctactagcc 1012
||||||| ||||| ||| | ||||||||||| || ||||||||||| |||||||| || |
Sbjct: 128 tgtggggaactgcccagttgtttatgcatccccgctacatgcatggagctgctacaagtc 187
Query: 1013 cagaggttaaagtatatgcttatgcggctgcacaagttaagaaagctttggaggtcactc 1072
|||| | | || ||||| ||||| || || ||||| ||||||||| ||||||| ||
Sbjct: 188 cagatatgcatgtctatgcatatgctgcagctcaagtcaagaaagctatggaggtgacaa 247
Query: 1073 actacctaggtggtgaaaactatgtgttctggggtggaagagagggttaccaaactcttc 1132
| | ||||| || || || | ||| |||||||||||||||||||| || |||||| | |
Sbjct: 248 atgaactagggggagagaattttgttttctggggtggaagagagggctatcaaactttgc 307
Query: 1133 tgaatactgatatgaagagagaacttgaccatctggctaactttcttcaagctgctgttg 1192
||||||||||| |||| | |||||||||||| |||||| ||||| ||||| || ||
Sbjct: 308 tgaatactgatctgaaaaaggaacttgaccatatggctaggtttctacaagcagcagtca 367
Query: 1193 actacaagaagaagattggattcaacggaacactattgatagagcctaaaccacaggaac 1252
| | |||||||| || || ||||| ||||| || | || || || |||||||| ||||
Sbjct: 368 attggaagaagaatataggcttcaatggaactcttctaattgaacccaaaccacaagaac 427
Query: 1253 caacaaaacaccagtatgactgggatg 1279
| |||||||||||||||||||||||||
Sbjct: 428 ctacaaaacaccagtatgactgggatg 454
>gb|DR693687.1|DR693687 EST1083776 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAE289 3' end, mRNA sequence
Length = 733
Score = 127 bits (64), Expect = 2e-027
Identities = 220/272 (80%)
Strand = Plus / Plus
Query: 595 aagaaccctcttgcttataagtggtataacaaggaggaagtgattctcggtaagaagatg 654
||||||||||| || |||||||||||||| || |||| |||||| || ||||| |||
Sbjct: 295 aagaaccctctggcatataagtggtataatgcagaagaagagattcttggaaagaaaatg 354
Query: 655 aaggattggatgcgcttcagtgttgcgttctggcacacgttccgtggtactggcgctgat 714
||||||||| || | || |||||||| ||||||||||| |||||||| || || ||||||
Sbjct: 355 aaggattggttgagatttagtgttgctttctggcacacattccgtgggaccggtgctgat 414
Query: 715 cctttcggtgctcctacaaagacttggccttgggaggacggcacaaattctttggccatg 774
|| || || ||||| ||||||| ||||| ||||| || |||||||| || ||||| |||
Sbjct: 415 ccatttggagctccaacaaagagctggccatgggaagatggcacaaactcattggctatg 474
Query: 775 gctaagagaagaatgagagctcactttgagttcatggagaagttgggagttgacaaatgg 834
||| | ||||||||||| | |||||||| | ||||||| |||||||| | |||
Sbjct: 475 gctctacgcagaatgagagcaaattttgagtttctcaagaagttaggagttgagaggtgg 534
Query: 835 tgcttccatgacagggatattgccccggatgg 866
||||| |||||| |||||||||| || |||||
Sbjct: 535 tgctttcatgaccgggatattgctcctgatgg 566
Score = 56.0 bits (28), Expect = 6e-006
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 953 tgtggggtactgcacagctctttatgcatcctcgttacatgcatggcgctgctactagcc 1012
||||||| ||||| ||| | ||||||||||| || ||||||||||| |||||||| || |
Sbjct: 653 tgtggggaactgcccagttgtttatgcatccccgctacatgcatggagctgctacaagtc 712
Query: 1013 caga 1016
||||
Sbjct: 713 caga 716
>gb|DT638327.1|DT638327 EST1153258 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHD74 3' end, mRNA sequence
Length = 794
Score = 127 bits (64), Expect = 2e-027
Identities = 220/272 (80%)
Strand = Plus / Plus
Query: 595 aagaaccctcttgcttataagtggtataacaaggaggaagtgattctcggtaagaagatg 654
||||||||||| || |||||||||||||| || |||| |||||| || ||||| |||
Sbjct: 303 aagaaccctctggcatataagtggtataatgcagaagaagagattcttggaaagaaaatg 362
Query: 655 aaggattggatgcgcttcagtgttgcgttctggcacacgttccgtggtactggcgctgat 714
||||||||| || | || |||||||| ||||||||||| |||||||| || || ||||||
Sbjct: 363 aaggattggttgagatttagtgttgctttctggcacacattccgtgggaccggtgctgat 422
Query: 715 cctttcggtgctcctacaaagacttggccttgggaggacggcacaaattctttggccatg 774
|| || || ||||| ||||||| ||||| ||||| || |||||||| || ||||| |||
Sbjct: 423 ccatttggagctccaacaaagagctggccatgggaagatggcacaaactcattggctatg 482
Query: 775 gctaagagaagaatgagagctcactttgagttcatggagaagttgggagttgacaaatgg 834
||| | ||||||||||| | |||||||| | ||||||| |||||||| | |||
Sbjct: 483 gctctacgcagaatgagagcaaattttgagtttctcaagaagttaggagttgagaggtgg 542
Query: 835 tgcttccatgacagggatattgccccggatgg 866
||||| |||||| |||||||||| || |||||
Sbjct: 543 tgctttcatgaccgggatattgctcctgatgg 574
Score = 58.0 bits (29), Expect = 2e-006
Identities = 92/113 (81%)
Strand = Plus / Plus
Query: 953 tgtggggtactgcacagctctttatgcatcctcgttacatgcatggcgctgctactagcc 1012
||||||| ||||| ||| | ||||||||||| || ||||||||||| |||||||| || |
Sbjct: 661 tgtggggaactgcccagttgtttatgcatccccgctacatgcatggagctgctacaagtc 720
Query: 1013 cagaggttaaagtatatgcttatgcggctgcacaagttaagaaagctttggag 1065
|||| | | || ||||| ||||| || || ||||| ||||||||| |||||
Sbjct: 721 cagatatgcatgtttatgcatatgctgcagctcaagtcaagaaagctatggag 773
>gb|DR684169.1|DR684169 EST1074246 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAP64 3' end, mRNA sequence
Length = 757
Score = 113 bits (57), Expect = 3e-023
Identities = 159/193 (82%)
Strand = Plus / Plus
Query: 1087 gaaaactatgtgttctggggtggaagagagggttaccaaactcttctgaatactgatatg 1146
||||||| ||| ||||||||||||||||| |||||||||||| | ||||||||||| |
Sbjct: 67 gaaaactttgtcttctggggtggaagagaaggttaccaaactttcttgaatactgatcta 126
Query: 1147 aagagagaacttgaccatctggctaactttcttcaagctgctgttgactacaagaagaag 1206
|||| || ||||||||| |||| || ||||||||||| || || ||| ||||| |
Sbjct: 127 aagaaggagcttgaccatatggccaaatttcttcaagcggccgtgaactggaagaaaacc 186
Query: 1207 attggattcaacggaacactattgatagagcctaaaccacaggaaccaacaaaacaccag 1266
||||| ||||| || || || | || |||||||||||||| ||||| ||||||||||||
Sbjct: 187 attggcttcaatgggacccttctaattgagcctaaaccacaagaacctacaaaacaccag 246
Query: 1267 tatgactgggatg 1279
||||| |||||||
Sbjct: 247 tatgattgggatg 259
Score = 81.8 bits (41), Expect = 1e-013
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 1519 aagaatggtggacttgcacctggtggtttcaactttgatgccaaattgcggag 1571
||||||||||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct: 499 aagaatggtgggcttgcacctggtgggttcaactttgatgcaaaattgcggag 551
Score = 79.8 bits (40), Expect = 4e-013
Identities = 88/104 (84%)
Strand = Plus / Plus
Query: 1336 aatgttgagtgcaaccatgctactctatctggacacagctgccatcatgaattggagact 1395
|||||||||||||| ||||| || || ||||| |||||||| ||||| || |||| |
Sbjct: 316 aatgttgagtgcaatcatgcaaccctctctgggcacagctgtcatcacgagctggaaata 375
Query: 1396 gcacggattaatgggctgcttggaaatatcgatgcaaacactgg 1439
||||||||| ||||| |||||||||| || ||||||||||||||
Sbjct: 376 gcacggatttatgggatgcttggaaacattgatgcaaacactgg 419
>gb|DR687407.1|DR687407 EST1077489 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABS09 3' end, mRNA sequence
Length = 762
Score = 105 bits (53), Expect = 8e-021
Identities = 219/273 (80%), Gaps = 1/273 (0%)
Strand = Plus / Plus
Query: 595 aagaaccctcttgcttataagtggtataacaaggaggaagtgattctcggtaagaagatg 654
||||||||||| || |||||||||||||| || |||| |||||| || ||||| |||
Sbjct: 295 aagaaccctctggcatataagtggtataatgcagaagaagagattcttggaaagaaaatg 354
Query: 655 aaggattggatgcgcttcagtgttgcgttctggcacacgttccgtggtactggcgctgat 714
||||||||| || | || |||||||| ||||||||||| |||||||| || || ||||||
Sbjct: 355 aaggattggttgagatttagtgttgctttctggcacacattccgtgggaccggtgctgat 414
Query: 715 cctttcggtgctcctacaaagacttggccttgggaggacggcacaaattctttggccatg 774
|| || || ||||| ||||||| ||||| ||||| || ||||||| || ||||| |||
Sbjct: 415 ccatttggagctccaacaaagagctggccatgggaagatagcacaaactcattggctatg 474
Query: 775 gctaagagaagaatgagagc-tcactttgagttcatggagaagttgggagttgacaaatg 833
||| | ||||||||||| | |||||||| | ||||||| |||||||| | ||
Sbjct: 475 gctctacgcagaatgagagcaaaattttgagtttctcaagaagttaggagttgagaggtg 534
Query: 834 gtgcttccatgacagggatattgccccggatgg 866
|||||| |||||| |||||||||| || |||||
Sbjct: 535 gtgctttcatgaccgggatattgctcctgatgg 567
Score = 48.1 bits (24), Expect = 0.002
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 953 tgtggggtactgcacagctctttatgcatcctcgttacatgcatggcgctgctactagcc 1012
||||||| ||||| ||| | ||||||||||| || ||||||||||| || ||||| || |
Sbjct: 654 tgtggggaactgcccagttgtttatgcatccccgctacatgcatggggccgctacaagtc 713
Query: 1013 caga 1016
||||
Sbjct: 714 caga 717
>dbj|BD236808.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 417
Score = 105 bits (53), Expect = 8e-021
Identities = 149/181 (82%)
Strand = Plus / Plus
Query: 1099 ttctggggtggaagagagggttaccaaactcttctgaatactgatatgaagagagaactt 1158
||||||||||||||||| |||||||||||||| ||||||||||| | |||| || |||
Sbjct: 28 ttctggggtggaagagaaggttaccaaactctcttgaatactgatctaaagaaggagctt 87
Query: 1159 gaccatctggctaactttcttcaagctgctgttgactacaagaagaagattggattcaac 1218
|||||| |||| || ||||||||||| || || ||| ||||| | ||||| |||||
Sbjct: 88 gaccatatggccaaatttcttcaagcggccgtgaactggaagaaaaccattggcttcaat 147
Query: 1219 ggaacactattgatagagcctaaaccacaggaaccaacaaaacaccagtatgactgggat 1278
|| || || | || |||||||| ||||| ||||| ||||||||||||||||| ||||||
Sbjct: 148 gggacccttctaattgagcctaagccacaagaacctacaaaacaccagtatgattgggat 207
Query: 1279 g 1279
|
Sbjct: 208 g 208
Score = 71.9 bits (36), Expect = 1e-010
Identities = 87/104 (83%)
Strand = Plus / Plus
Query: 1336 aatgttgagtgcaaccatgctactctatctggacacagctgccatcatgaattggagact 1395
|||||||||||||| ||||| || || ||||| |||||||| ||||| || |||| |
Sbjct: 265 aatgttgagtgcaatcatgcaaccctctctgggcacagctgtcatcacgagctggaaata 324
Query: 1396 gcacggattaatgggctgcttggaaatatcgatgcaaacactgg 1439
|||| |||| ||||| |||||||||| || ||||||||||||||
Sbjct: 325 gcacagatttatgggatgcttggaaacattgatgcaaacactgg 368
>dbj|BD236811.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 421
Score = 81.8 bits (41), Expect = 1e-013
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 1519 aagaatggtggacttgcacctggtggtttcaactttgatgccaaattgcggag 1571
||||||||||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct: 216 aagaatggtgggcttgcacctggtgggttcaactttgatgcaaaattgcggag 268
Score = 71.9 bits (36), Expect = 1e-010
Identities = 87/104 (83%)
Strand = Plus / Plus
Query: 1336 aatgttgagtgcaaccatgctactctatctggacacagctgccatcatgaattggagact 1395
|||||||||||||| ||||| || || ||||| |||||||| ||||| || |||| |
Sbjct: 33 aatgttgagtgcaatcatgcaaccctctctgggcacagctgtcatcacgagctggaaata 92
Query: 1396 gcacggattaatgggctgcttggaaatatcgatgcaaacactgg 1439
|||| |||| ||||| |||||||||| || ||||||||||||||
Sbjct: 93 gcacagatttatgggatgcttggaaacattgatgcaaacactgg 136
>dbj|BD236813.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 373
Score = 81.8 bits (41), Expect = 1e-013
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 1519 aagaatggtggacttgcacctggtggtttcaactttgatgccaaattgcggag 1571
||||||||||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct: 305 aagaatggtgggcttgcacctggtgggttcaactttgatgcaaaattgcggag 357
Score = 71.9 bits (36), Expect = 1e-010
Identities = 87/104 (83%)
Strand = Plus / Plus
Query: 1336 aatgttgagtgcaaccatgctactctatctggacacagctgccatcatgaattggagact 1395
|||||||||||||| ||||| || || ||||| |||||||| ||||| || |||| |
Sbjct: 122 aatgttgagtgcaatcatgcaaccctctctgggcacagctgtcatcacgagctggaaata 181
Query: 1396 gcacggattaatgggctgcttggaaatatcgatgcaaacactgg 1439
|||| |||| ||||| |||||||||| || ||||||||||||||
Sbjct: 182 gcacagatttatgggatgcttggaaacattgatgcaaacactgg 225
Score = 60.0 bits (30), Expect = 4e-007
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 1234 gagcctaaaccacaggaaccaacaaaacaccagtatgactgggatg 1279
|||||||| ||||| ||||| ||||||||||||||||| |||||||
Sbjct: 20 gagcctaagccacaagaacctacaaaacaccagtatgattgggatg 65
>gb|AW754575.1|AW754575 PC03H04 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC03H04, mRNA sequence
Length = 497
Score = 73.8 bits (37), Expect = 3e-011
Identities = 145/181 (80%)
Strand = Plus / Plus
Query: 686 ggcacacgttccgtggtactggcgctgatcctttcggtgctcctacaaagacttggcctt 745
||||||| |||||||| || || |||||||| || || ||||| ||||||| ||||| |
Sbjct: 18 ggcacacattccgtgggaccggtgctgatccatttggagctccaacaaagagctggccat 77
Query: 746 gggaggacggcacaaattctttggccatggctaagagaagaatgagagctcactttgagt 805
|||| || |||||||| || ||||| |||||| | ||||||||||| | |||||||
Sbjct: 78 gggaagatggcacaaactcattggctatggctctacgcagaatgagagcaaattttgagt 137
Query: 806 tcatggagaagttgggagttgacaaatggtgcttccatgacagggatattgccccggatg 865
| | ||||||| |||||||| | |||||||| |||||| |||||||||| || ||||
Sbjct: 138 ttctcaagaagttaggagttgagaggtggtgctttcatgaccgggatattgctcctgatg 197
Query: 866 g 866
|
Sbjct: 198 g 198
Score = 67.9 bits (34), Expect = 2e-009
Identities = 155/196 (79%)
Strand = Plus / Plus
Query: 953 tgtggggtactgcacagctctttatgcatcctcgttacatgcatggcgctgctactagcc 1012
||||||| ||||| ||| | ||||||||||| || ||||||||||| |||||||| || |
Sbjct: 285 tgtggggaactgcccagttgtttatgcatccccgctacatgcatggagctgctacaagtc 344
Query: 1013 cagaggttaaagtatatgcttatgcggctgcacaagttaagaaagctttggaggtcactc 1072
|||| | | || ||||| ||||| || || ||||| ||||||||| ||||| | ||
Sbjct: 345 cagatatgcatgtctatgcatatgctgcagctcaagtcaagaaagctatggagatgacaa 404
Query: 1073 actacctaggtggtgaaaactatgtgttctggggtggaagagagggttaccaaactcttc 1132
| | ||||| || || || | ||| ||||||||||| ||||||| || |||||| | |
Sbjct: 405 atgaactagggggagagaattttgttttctggggtggnngagagggctatcaaactttgc 464
Query: 1133 tgaatactgatatgaa 1148
||||||||||| ||||
Sbjct: 465 tgaatactgatctgaa 480
>gb|CO159937.1|CO159937 FLD1_17_D09.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_17_D09_A029 3', mRNA sequence
Length = 760
Score = 73.8 bits (37), Expect = 3e-011
Identities = 58/65 (89%)
Strand = Plus / Minus
Query: 952 ttgtggggtactgcacagctctttatgcatcctcgttacatgcatggcgctgctactagc 1011
|||||||| ||||||||| | || ||||||||||||||||||||||| |||||||| ||
Sbjct: 111 ttgtggggaactgcacagttgttcatgcatcctcgttacatgcatggagctgctacgagt 52
Query: 1012 ccaga 1016
|||||
Sbjct: 51 ccaga 47
Score = 63.9 bits (32), Expect = 3e-008
Identities = 104/128 (81%)
Strand = Plus / Minus
Query: 631 gaagtgattctcggtaagaagatgaaggattggatgcgcttcagtgttgcgttctggcac 690
|||| |||||| || ||||| |||||||||||| || | || |||||||| ||||||||
Sbjct: 432 gaagagattcttggaaagaaaatgaaggattggctgagatttagtgttgctttctggcat 373
Query: 691 acgttccgtggtactggcgctgatcctttcggtgctcctacaaagacttggccttgggag 750
|| |||||||| | ||| |||||||| || || ||||| || |||| ||||| |||||
Sbjct: 372 acattccgtggcagtggggctgatccatttggggctccaaccaagaactggccatgggaa 313
Query: 751 gacggcac 758
|| |||||
Sbjct: 312 gatggcac 305
>dbj|BD236809.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 314
Score = 73.8 bits (37), Expect = 3e-011
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 1522 aatggtggacttgcacctggtggtttcaactttgatgccaaattgcggagggaaagt 1578
||||| || ||||||||||||||||||||||||||||| ||| || |||||||||||
Sbjct: 92 aatggagggcttgcacctggtggtttcaactttgatgcaaaactgaggagggaaagt 148
>dbj|BD236810.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 323
Score = 73.8 bits (37), Expect = 3e-011
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 1522 aatggtggacttgcacctggtggtttcaactttgatgccaaattgcggagggaaagt 1578
||||| || ||||||||||||||||||||||||||||| ||| || |||||||||||
Sbjct: 92 aatggagggcttgcacctggtggtttcaactttgatgcaaaactgaggagggaaagt 148
>gb|DR081605.1|DR081605 RTFEPL1_30_H04.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_30_H04_A029 5', mRNA sequence
Length = 680
Score = 71.9 bits (36), Expect = 1e-010
Identities = 141/176 (80%)
Strand = Plus / Plus
Query: 631 gaagtgattctcggtaagaagatgaaggattggatgcgcttcagtgttgcgttctggcac 690
|||| |||||| || ||||| |||||||||||| || | || |||||||| ||||||||
Sbjct: 307 gaagagattcttggaaagaaaatgaaggattggctgagatttagtgttgctttctggcat 366
Query: 691 acgttccgtggtactggcgctgatcctttcggtgctcctacaaagacttggccttgggag 750
|| |||||||| | ||| |||||||| || || ||||| || |||| ||||| |||||
Sbjct: 367 acattccgtggcagtggggctgatccatttggggctccaaccaagaactggccatgggaa 426
Query: 751 gacggcacaaattctttggccatggctaagagaagaatgagagctcactttgagtt 806
|| ||||| || || || || |||||| |||||||||| ||| ||||||||||
Sbjct: 427 gatggcactaactcattagctatggctctaagaagaatgaaagcgaactttgagtt 482
Score = 65.9 bits (33), Expect = 7e-009
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 952 ttgtggggtactgcacagctctttatgcatcctcgttacatgcatggcgctgc 1004
|||||||| ||||||||| | || ||||||||||||||||||||||| |||||
Sbjct: 628 ttgtggggaactgcacagttgttcatgcatcctcgttacatgcatggagctgc 680
>gb|DR078589.1|DR078589 RTFEPL1_5_D12.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_5_D12_A029 5', mRNA sequence
Length = 722
Score = 69.9 bits (35), Expect = 4e-010
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 952 ttgtggggtactgcacagctctttatgcatcctcgttacatgcatggcgctgcta 1006
|||||||| ||||||||| | || ||||||||||||||||||||||| |||||||
Sbjct: 668 ttgtggggaactgcacagttgttcatgcatcctcgttacatgcatggagctgcta 722
Score = 46.1 bits (23), Expect = 0.006
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 631 gaagtgattctcggtaagaagatgaaggattggatgcgcttcagtgttgcgttctggca 689
|||| |||||| || ||||| |||||||||||| || | || |||||||| ||||||||
Sbjct: 347 gaagagattcttggaaagaaaatgaaggattggctgagatttagtgttgctttctggca 405
>gb|BX251976.1|BX251976 BX251976 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP058A03, mRNA sequence
Length = 604
Score = 65.9 bits (33), Expect = 7e-009
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 1519 aagaatggtggacttgcacctggtggtttcaactttgatgccaaattgcggag 1571
||||| ||||| |||||||||||||| |||||||||||||| ||||| |||||
Sbjct: 113 aagaacggtgggcttgcacctggtgggttcaactttgatgcaaaattacggag 165
>gb|BX679414.1|BX679414 BX679414 RS Pinus pinaster cDNA clone RS24H08, mRNA sequence
Length = 214
Score = 60.0 bits (30), Expect = 4e-007
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 1522 aatggtggacttgcacctggtggtttcaactttgatgc 1559
||||| || |||||||||||||||||||||||||||||
Sbjct: 177 aatggagggcttgcacctggtggtttcaactttgatgc 214
Score = 46.1 bits (23), Expect = 0.006
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 1397 cacggattaatgggctgcttggaaatatcgatgcaaacactgg 1439
|||| ||| ||||| ||||||| ||||| ||||||||||||||
Sbjct: 50 cacgaatttatgggatgcttggtaatattgatgcaaacactgg 92
>gb|BF610181.1|BF610181 NXSI_055_F11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_055_F11 5' similar to Arabidopsis thaliana
sequence At5g57655 xylose isomerase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 413
Score = 46.1 bits (23), Expect = 0.006
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 631 gaagtgattctcggtaagaagatgaaggattggatgcgcttcagtgttgcgttctggca 689
|||| |||||| || ||||| |||||||||||| || | || |||||||| ||||||||
Sbjct: 290 gaagagattcttggaaagaaaatgaaggattggctgagatttagtgttgctttctggca 348
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 234,991
Number of Sequences: 355925
Number of extensions: 234991
Number of successful extensions: 61283
Number of sequences better than 0.5: 17
Number of HSP's better than 0.5 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61230
Number of HSP's gapped (non-prelim): 48
length of query: 2204
length of database: 217,277,237
effective HSP length: 20
effective length of query: 2184
effective length of database: 210,158,737
effective search space: 458986681608
effective search space used: 458986681608
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)