BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AF019146.2.1
(1761 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR069530.1|DR069530 RTDK1_7_F12.g1_A029 Roots, dark Pinu... 52 8e-005
gb|DR069440.1|DR069440 RTDK1_7_F12.b1_A029 Roots, dark Pinu... 42 0.076
gb|CX712380.1|CX712380 RTPQ1_2_D10.b2_A032 Roots treated wi... 40 0.30
gb|CX712459.1|CX712459 RTPQ1_2_D10.g2_A032 Roots treated wi... 40 0.30
>gb|DR069530.1|DR069530 RTDK1_7_F12.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_7_F12_A029 5', mRNA sequence
Length = 816
Score = 52.0 bits (26), Expect = 8e-005
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 1067 gactactggatcgtgaagaactcgtggggc 1096
|||||||||||||| |||||||||||||||
Sbjct: 325 gactactggatcgtcaagaactcgtggggc 296
Score = 42.1 bits (21), Expect = 0.076
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 590 gtcaaggaccagggccaatgcggtgggtgctgggcgttctc 630
||||||||||||||||| ||||| ||||||||| |||||
Sbjct: 805 gtcaaggaccagggccagtgcggctcgtgctgggctttctc 765
>gb|DR069440.1|DR069440 RTDK1_7_F12.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_7_F12_A029 3', mRNA sequence
Length = 844
Score = 42.1 bits (21), Expect = 0.076
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 590 gtcaaggaccagggccaatgcggtgggtgctgggcgttctc 630
||||||||||||||||| ||||| ||||||||| |||||
Sbjct: 438 gtcaaggaccagggccagtgcggctcgtgctgggctttctc 398
>gb|CX712380.1|CX712380 RTPQ1_2_D10.b2_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_2_D10_A032 3', mRNA sequence
Length = 826
Score = 40.1 bits (20), Expect = 0.30
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 590 gtcaaggaccagggccaatgcggt 613
||||||||||| ||||||||||||
Sbjct: 146 gtcaaggaccaaggccaatgcggt 169
>gb|CX712459.1|CX712459 RTPQ1_2_D10.g2_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_2_D10_A032 5', mRNA sequence
Length = 679
Score = 40.1 bits (20), Expect = 0.30
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 590 gtcaaggaccagggccaatgcggt 613
||||||||||| ||||||||||||
Sbjct: 323 gtcaaggaccaaggccaatgcggt 346
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 169,774
Number of Sequences: 355925
Number of extensions: 169774
Number of successful extensions: 36784
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36774
Number of HSP's gapped (non-prelim): 10
length of query: 1761
length of database: 217,277,237
effective HSP length: 20
effective length of query: 1741
effective length of database: 210,158,737
effective search space: 365886361117
effective search space used: 365886361117
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)