BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AB021176.2.1
(1318 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX713519.1|CX713519 RTPQ1_10_D09.b1_A032 Roots treated w... 44 0.014
gb|BM428403.1|BM428403 NXRV_016_C07_F NXRV (Nsf Xylem Root ... 42 0.057
gb|BQ635273.1|BQ635273 NXRV078_C10_F NXRV (Nsf Xylem Root w... 42 0.057
gb|CD020826.1|CD020826 NXNV_090_G03_F Nsf Xylem Normal wood... 42 0.057
gb|CF385428.1|CF385428 RTDR1_3_H09.g1_A015 Loblolly pine ro... 42 0.057
gb|CF387436.1|CF387436 RTDR1_12_D11.g1_A015 Loblolly pine r... 42 0.057
gb|CF387874.1|CF387874 RTDR1_18_D10.g1_A015 Loblolly pine r... 42 0.057
gb|CF396555.1|CF396555 RTDS2_22_C12.g1_A021 Drought-stresse... 42 0.057
gb|CF473594.1|CF473594 RTWW2_3_F08.g1_A021 Well-watered lob... 42 0.057
gb|CF668205.1|CF668205 RTCNT1_35_C03.b1_A029 Root control P... 42 0.057
gb|CF668284.1|CF668284 RTCNT1_35_C03.g1_A029 Root control P... 42 0.057
gb|CN785947.1|CN785947 EST784638 Sequencing ESTs from loblo... 42 0.057
gb|CO159187.1|CO159187 FLD1_12_B12.b1_A029 Root flooded Pin... 42 0.057
gb|CO159265.1|CO159265 FLD1_12_B12.g1_A029 Root flooded Pin... 42 0.057
gb|CO164088.1|CO164088 FLD1_45_F01.g1_A029 Root flooded Pin... 42 0.057
gb|CO165965.1|CO165965 FLD1_58_H05.b1_A029 Root flooded Pin... 42 0.057
gb|CO166040.1|CO166040 FLD1_58_H05.g1_A029 Root flooded Pin... 42 0.057
gb|CO198223.1|CO198223 GEO1_12_D05.b1_A029 Root gravitropis... 42 0.057
gb|CO198290.1|CO198290 GEO1_12_D05.g1_A029 Root gravitropis... 42 0.057
gb|CO198727.1|CO198727 GEO1_16_B12.b1_A029 Root gravitropis... 42 0.057
gb|CO198787.1|CO198787 GEO1_16_B12.g1_A029 Root gravitropis... 42 0.057
gb|CO412350.1|CO412350 EST842735 Sequencing ESTs from loblo... 42 0.057
gb|CO412547.1|CO412547 EST842932 Sequencing ESTs from loblo... 42 0.057
gb|CO361630.1|CO361630 NDL2_6_B06.b1_A029 Needles control 2... 42 0.057
gb|CO361701.1|CO361701 NDL2_6_B06.g1_A029 Needles control 2... 42 0.057
gb|CV137042.1|CV137042 EST848251 Sequencing ESTs from loblo... 42 0.057
gb|CV137207.1|CV137207 EST848416 Sequencing ESTs from loblo... 42 0.057
gb|CV137559.1|CV137559 EST848768 Sequencing ESTs from loblo... 42 0.057
gb|CV138153.1|CV138153 EST849362 Sequencing ESTs from loblo... 42 0.057
gb|CV138382.1|CV138382 EST849591 Sequencing ESTs from loblo... 42 0.057
gb|CV144904.1|CV144904 EST856113 Sequencing ESTs from loblo... 42 0.057
gb|CV145595.1|CV145595 EST856804 Sequencing ESTs from loblo... 42 0.057
gb|CV145931.1|CV145931 EST857140 Sequencing ESTs from loblo... 42 0.057
gb|DN445813.1|DN445813 EST941612 Sequencing ESTs from loblo... 42 0.057
gb|DN453462.1|DN453462 EST949261 Sequencing ESTs from loblo... 42 0.057
gb|DN457108.1|DN457108 EST952907 Sequencing ESTs from loblo... 42 0.057
gb|DN458167.1|DN458167 EST953966 Sequencing ESTs from loblo... 42 0.057
gb|DN460337.1|DN460337 EST956136 Sequencing ESTs from loblo... 42 0.057
gb|DN460928.1|DN460928 EST956727 Sequencing ESTs from loblo... 42 0.057
gb|DR010878.1|DR010878 HEAT1_1_H09.g1_A029 Root at 37 C for... 42 0.057
gb|DR011301.1|DR011301 HEAT1_4_H09.g1_A029 Root at 37 C for... 42 0.057
gb|DR163107.1|DR163107 RTFE1_41_B01.b1_A029 Roots minus iro... 42 0.057
gb|DR163193.1|DR163193 RTFE1_41_B01.g1_A029 Roots minus iro... 42 0.057
gb|DR163546.1|DR163546 RTFE1_43_B12.g1_A029 Roots minus iro... 42 0.057
gb|DR686155.1|DR686155 EST1076233 Normalized pine embryo li... 42 0.057
gb|DT626166.1|DT626166 EST1158090 Sequencing ESTs from lobl... 42 0.057
gb|DT626189.1|DT626189 EST1158113 Sequencing ESTs from lobl... 42 0.057
gb|DT626495.1|DT626495 EST1158419 Sequencing ESTs from lobl... 42 0.057
gb|DT624756.1|DT624756 EST1158851 Sequencing ESTs from lobl... 42 0.057
gb|AW225729.1|AW225729 ST71B06 Pine TriplEx shoot tip libra... 40 0.23
gb|CR393635.1|CR393635 CR393635 RN Pinus pinaster cDNA clon... 40 0.23
gb|CO158501.1|CO158501 FLD1_7_G06.b1_A029 Root flooded Pinu... 40 0.23
gb|CO158578.1|CO158578 FLD1_7_G06.g1_A029 Root flooded Pinu... 40 0.23
gb|CO363655.1|CO363655 RTK1_11_B06.b1_A029 Roots minus pota... 40 0.23
gb|DR681844.1|DR681844 EST1071919 Normalized pine embryo li... 40 0.23
gb|DT630830.1|DT630830 EST1145761 Normalized pine embryo li... 40 0.23
>gb|CX713519.1|CX713519 RTPQ1_10_D09.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_10_D09_A032 3', mRNA sequence
Length = 363
Score = 44.1 bits (22), Expect = 0.014
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaagc 211
||||||||||||||||||||||
Sbjct: 76 aaggagaaggagaaggagaagc 97
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 191 aggagaaggagaaggagaag 210
||||||||||||||||||||
Sbjct: 71 aggagaaggagaaggagaag 90
>gb|BM428403.1|BM428403 NXRV_016_C07_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_016_C07 5' similar to Arabidopsis thaliana
sequence At3g43520 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 556
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 12 aaggagaaggagaaggagaag 32
>gb|BQ635273.1|BQ635273 NXRV078_C10_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV078_C10 5' similar to Arabidopsis thaliana
sequence At3g43520 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 454
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 11 aaggagaaggagaaggagaag 31
>gb|CD020826.1|CD020826 NXNV_090_G03_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_090_G03 5', mRNA sequence
Length = 154
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 49 aaggagaaggagaaggagaag 69
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 43 aaggagaaggagaaggagaag 63
>gb|CF385428.1|CF385428 RTDR1_3_H09.g1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_3_H09_A015 5', mRNA
sequence
Length = 789
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 351 aaggagaaggagaaggagaag 371
>gb|CF387436.1|CF387436 RTDR1_12_D11.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_12_D11_A015 5', mRNA
sequence
Length = 800
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 418 aaggagaaggagaaggagaag 438
>gb|CF387874.1|CF387874 RTDR1_18_D10.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_18_D10_A015 5', mRNA
sequence
Length = 793
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 341 aaggagaaggagaaggagaag 361
>gb|CF396555.1|CF396555 RTDS2_22_C12.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_22_C12_A021 5', mRNA sequence
Length = 384
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 1 aaggagaaggagaaggagaag 21
>gb|CF473594.1|CF473594 RTWW2_3_F08.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_3_F08_A021 5', mRNA sequence
Length = 781
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 413 aaggagaaggagaaggagaag 433
>gb|CF668205.1|CF668205 RTCNT1_35_C03.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_35_C03_A029 3', mRNA sequence
Length = 771
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 147 aaggagaaggagaaggagaag 167
>gb|CF668284.1|CF668284 RTCNT1_35_C03.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_35_C03_A029 5', mRNA sequence
Length = 806
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 336 aaggagaaggagaaggagaag 356
>gb|CN785947.1|CN785947 EST784638 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAB565 5' end, mRNA sequence
Length = 951
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 463 aaggagaaggagaaggagaag 483
>gb|CO159187.1|CO159187 FLD1_12_B12.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_12_B12_A029 3', mRNA sequence
Length = 668
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 72 aaggagaaggagaaggagaag 92
>gb|CO159265.1|CO159265 FLD1_12_B12.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_12_B12_A029 5', mRNA sequence
Length = 686
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 402 aaggagaaggagaaggagaag 422
>gb|CO164088.1|CO164088 FLD1_45_F01.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_45_F01_A029 5', mRNA sequence
Length = 826
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 185 aaggagaaggagaaggagaag 205
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 179 aaggagaaggagaaggagaag 199
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 173 aaggagaaggagaaggagaag 193
>gb|CO165965.1|CO165965 FLD1_58_H05.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_58_H05_A029 3', mRNA sequence
Length = 779
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 159 aaggagaaggagaaggagaag 179
>gb|CO166040.1|CO166040 FLD1_58_H05.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_58_H05_A029 5', mRNA sequence
Length = 869
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 418 aaggagaaggagaaggagaag 438
>gb|CO198223.1|CO198223 GEO1_12_D05.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_12_D05_A029 3', mRNA sequence
Length = 648
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 23 aaggagaaggagaaggagaag 43
>gb|CO198290.1|CO198290 GEO1_12_D05.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_12_D05_A029 5', mRNA sequence
Length = 776
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 408 aaggagaaggagaaggagaag 428
>gb|CO198727.1|CO198727 GEO1_16_B12.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_16_B12_A029 3', mRNA sequence
Length = 780
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 157 aaggagaaggagaaggagaag 177
>gb|CO198787.1|CO198787 GEO1_16_B12.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_16_B12_A029 5', mRNA sequence
Length = 807
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 390 aaggagaaggagaaggagaag 410
>gb|CO412350.1|CO412350 EST842735 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIALW09 5' end, mRNA sequence
Length = 915
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 462 aaggagaaggagaaggagaag 482
>gb|CO412547.1|CO412547 EST842932 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIALY70 5' end, mRNA sequence
Length = 853
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 462 aaggagaaggagaaggagaag 482
>gb|CO361630.1|CO361630 NDL2_6_B06.b1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_6_B06_A029 3', mRNA sequence
Length = 814
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 114 aaggagaaggagaaggagaag 134
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaa 209
||||||||||||||||||||
Sbjct: 48 aaggagaaggagaaggagaa 67
>gb|CO361701.1|CO361701 NDL2_6_B06.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_6_B06_A029 5', mRNA sequence
Length = 867
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 199 aaggagaaggagaaggagaag 219
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaa 209
||||||||||||||||||||
Sbjct: 133 aaggagaaggagaaggagaa 152
>gb|CV137042.1|CV137042 EST848251 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIAJ51 5' end, mRNA sequence
Length = 763
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 185 aaggagaaggagaaggagaag 205
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 179 aaggagaaggagaaggagaag 199
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 173 aaggagaaggagaaggagaag 193
>gb|CV137207.1|CV137207 EST848416 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIAL50 5' end, mRNA sequence
Length = 881
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 187 aaggagaaggagaaggagaag 207
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 181 aaggagaaggagaaggagaag 201
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 175 aaggagaaggagaaggagaag 195
>gb|CV137559.1|CV137559 EST848768 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIAQ13 5' end, mRNA sequence
Length = 837
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 451 aaggagaaggagaaggagaag 471
>gb|CV138153.1|CV138153 EST849362 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIAZ54 5' end, mRNA sequence
Length = 860
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 465 aaggagaaggagaaggagaag 485
>gb|CV138382.1|CV138382 EST849591 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIB248 5' end, mRNA sequence
Length = 851
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 459 aaggagaaggagaaggagaag 479
>gb|CV144904.1|CV144904 EST856113 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIDB77 5' end, mRNA sequence
Length = 767
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 519 aaggagaaggagaaggagaag 539
>gb|CV145595.1|CV145595 EST856804 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIDK47 5' end, mRNA sequence
Length = 769
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 521 aaggagaaggagaaggagaag 541
>gb|CV145931.1|CV145931 EST857140 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIDQ76 5' end, mRNA sequence
Length = 956
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 408 aaggagaaggagaaggagaag 428
>gb|DN445813.1|DN445813 EST941612 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIA261 5' end, mRNA sequence
Length = 922
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 702 aaggagaaggagaaggagaag 722
>gb|DN453462.1|DN453462 EST949261 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIFT09 5' end, mRNA sequence
Length = 896
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 408 aaggagaaggagaaggagaag 428
>gb|DN457108.1|DN457108 EST952907 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIGW28 5' end, mRNA sequence
Length = 772
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 428 aaggagaaggagaaggagaag 448
>gb|DN458167.1|DN458167 EST953966 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIH879 5' end, mRNA sequence
Length = 776
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 465 aaggagaaggagaaggagaag 485
>gb|DN460337.1|DN460337 EST956136 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIHX36 5' end, mRNA sequence
Length = 889
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 462 aaggagaaggagaaggagaag 482
>gb|DN460928.1|DN460928 EST956727 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPII422 5' end, mRNA sequence
Length = 888
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 411 aaggagaaggagaaggagaag 431
>gb|DR010878.1|DR010878 HEAT1_1_H09.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_1_H09_A029 5', mRNA sequence
Length = 691
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 359 aaggagaaggagaaggagaag 379
>gb|DR011301.1|DR011301 HEAT1_4_H09.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_4_H09_A029 5', mRNA sequence
Length = 731
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 350 aaggagaaggagaaggagaag 370
>gb|DR163107.1|DR163107 RTFE1_41_B01.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_41_B01_A029 3', mRNA sequence
Length = 824
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 149 aaggagaaggagaaggagaag 169
>gb|DR163193.1|DR163193 RTFE1_41_B01.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_41_B01_A029 5', mRNA sequence
Length = 953
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 399 aaggagaaggagaaggagaag 419
>gb|DR163546.1|DR163546 RTFE1_43_B12.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_43_B12_A029 5', mRNA sequence
Length = 872
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 360 aaggagaaggagaaggagaag 380
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 354 aaggagaaggagaaggagaag 374
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 348 aaggagaaggagaaggagaag 368
>gb|DR686155.1|DR686155 EST1076233 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABC93 3' end, mRNA sequence
Length = 801
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 530 aaggagaaggagaaggagaag 550
>gb|DT626166.1|DT626166 EST1158090 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMA780 5' end, mRNA sequence
Length = 848
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 337 aaggagaaggagaaggagaag 357
>gb|DT626189.1|DT626189 EST1158113 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMA808 5' end, mRNA sequence
Length = 611
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 185 aaggagaaggagaaggagaag 205
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 179 aaggagaaggagaaggagaag 199
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 173 aaggagaaggagaaggagaag 193
>gb|DT626495.1|DT626495 EST1158419 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAB45 5' end, mRNA sequence
Length = 837
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 451 aaggagaaggagaaggagaag 471
>gb|DT624756.1|DT624756 EST1158851 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAG12 5' end, mRNA sequence
Length = 609
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 408 aaggagaaggagaaggagaag 428
>gb|AW225729.1|AW225729 ST71B06 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST71B06, mRNA sequence
Length = 404
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaa 209
||||||||||||||||||||
Sbjct: 96 aaggagaaggagaaggagaa 115
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 129,458
Number of Sequences: 355925
Number of extensions: 129458
Number of successful extensions: 27940
Number of sequences better than 0.5: 56
Number of HSP's better than 0.5 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27658
Number of HSP's gapped (non-prelim): 225
length of query: 1318
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1299
effective length of database: 210,514,662
effective search space: 273458545938
effective search space used: 273458545938
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)