BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 9196052.2.1
         (771 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CZ894856.1|CZ894856  204_1_12063572_3_37681_012 Pine meth...    34   8.1  
gb|BQ698949.1|BQ698949  NXRV117_D12_F NXRV (Nsf Xylem Root w...    34   8.1  
gb|DR090532.1|DR090532  RTAL1_15_E11.g1_A029 Roots plus adde...    34   8.1  

>gb|CZ894856.1|CZ894856 204_1_12063572_3_37681_012 Pine methylation filtered library
           (LibID: 204) Pinus taeda genomic, DNA sequence
          Length = 464

 Score = 34.2 bits (17), Expect = 8.1
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 215 tggaagagagagagaaa 231
           |||||||||||||||||
Sbjct: 3   tggaagagagagagaaa 19



>gb|BQ698949.1|BQ698949 NXRV117_D12_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
           clone NXRV117_D12 5', mRNA sequence
          Length = 740

 Score = 34.2 bits (17), Expect = 8.1
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 211 agagtggaagagagaga 227
           |||||||||||||||||
Sbjct: 58  agagtggaagagagaga 42



>gb|DR090532.1|DR090532 RTAL1_15_E11.g1_A029 Roots plus added aluminum Pinus taeda cDNA
           clone RTAL1_15_E11_A029 5', mRNA sequence
          Length = 797

 Score = 34.2 bits (17), Expect = 8.1
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 155 aaacaaatggaaaagga 171
           |||||||||||||||||
Sbjct: 318 aaacaaatggaaaagga 334



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  May 2, 2006  3:25 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 80,121
Number of Sequences: 355925
Number of extensions: 80121
Number of successful extensions: 22392
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22386
Number of HSP's gapped (non-prelim): 6
length of query: 771
length of database: 217,277,237
effective HSP length: 19
effective length of query: 752
effective length of database: 210,514,662
effective search space: 158307025824
effective search space used: 158307025824
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)