BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 9009927.2.1
(404 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF391408.1|CF391408 RTDR3_1_E10.g1_A022 Loblolly pine ro... 56 1e-006
gb|CF394327.1|CF394327 RTDS2_4_B08.g1_A021 Drought-stressed... 56 1e-006
gb|CF395727.1|CF395727 RTDS2_16_B07.g1_A021 Drought-stresse... 56 1e-006
gb|CF397272.1|CF397272 RTDS3_2_C01.g1_A022 Drought-stressed... 56 1e-006
gb|DR161095.1|DR161095 RTFE1_9_G03.g1_A029 Roots minus iron... 56 1e-006
gb|AW065119.1|AW065119 ST39H05 Pine TriplEx shoot tip libra... 52 2e-005
gb|CF668816.1|CF668816 RTCNT1_38_G11.g1_A029 Root control P... 52 2e-005
gb|CO170303.1|CO170303 NDL1_13_D05.b1_A029 Needles control ... 52 2e-005
gb|CO368639.1|CO368639 RTK1_41_H02.g1_A029 Roots minus pota... 52 2e-005
gb|DR058733.1|DR058733 RTNIT1_13_C07.g1_A029 Roots minus ni... 52 2e-005
gb|DR098778.1|DR098778 STRR1_47_G01.g1_A033 Stem Response R... 52 2e-005
gb|DR686108.1|DR686108 EST1076186 Normalized pine embryo li... 52 2e-005
gb|DR694940.1|DR694940 EST1085033 Normalized pine embryo li... 52 2e-005
gb|DR744906.1|DR744906 RTCU1_25_E06.g1_A029 Roots plus adde... 52 2e-005
gb|DT633531.1|DT633531 EST1148462 Normalized pine embryo li... 52 2e-005
gb|DT639133.1|DT639133 EST1154064 Normalized pine embryo li... 52 2e-005
gb|CF391376.1|CF391376 RTDR3_1_G04.g1_A022 Loblolly pine ro... 50 7e-005
gb|CF474496.1|CF474496 RTWW2_9_D02.b1_A021 Well-watered lob... 50 7e-005
gb|CF667292.1|CF667292 RTCNT1_29_G02.b1_A029 Root control P... 50 7e-005
gb|CO173370.1|CO173370 NDL1_35_F03.g1_A029 Needles control ... 50 7e-005
gb|CO361388.1|CO361388 NDL2_4_C06.g1_A029 Needles control 2... 50 7e-005
gb|CO361678.1|CO361678 NDL2_6_H01.b1_A029 Needles control 2... 50 7e-005
gb|CO361758.1|CO361758 NDL2_6_H01.g1_A029 Needles control 2... 50 7e-005
gb|DR101544.1|DR101544 STRR1_74_C02.b1_A033 Stem Response R... 50 7e-005
gb|DR101609.1|DR101609 STRR1_74_C02.g1_A033 Stem Response R... 50 7e-005
gb|DR111301.1|DR111301 RTS1_16_F03.g1_A029 Roots minus sulf... 50 7e-005
gb|CF385274.1|CF385274 RTDR1_2_D01.g1_A015 Loblolly pine ro... 48 3e-004
gb|CF388652.1|CF388652 RTDR2_4_A10.g1_A021 Loblolly pine ro... 48 3e-004
gb|CF389081.1|CF389081 RTDR2_13_A10.g1_A021 Loblolly pine r... 48 3e-004
gb|CF393923.1|CF393923 RTDS2_2_G07.b1_A021 Drought-stressed... 48 3e-004
gb|CF399612.1|CF399612 RTDS3_26_H01.g1_A022 Drought-stresse... 48 3e-004
gb|CF400460.1|CF400460 RTWW1_5_H12.g1_A015 Well-watered lob... 48 3e-004
gb|CF401736.1|CF401736 RTWW1_14_C05.g1_A015 Well-watered lo... 48 3e-004
gb|CF402623.1|CF402623 RTWW1_21_B11.g1_A015 Well-watered lo... 48 3e-004
gb|CO162411.1|CO162411 FLD1_35_D02.b1_A029 Root flooded Pin... 48 3e-004
gb|CO162486.1|CO162486 FLD1_35_D02.g1_A029 Root flooded Pin... 48 3e-004
gb|CO176256.1|CO176256 NDL1_60_G12.g1_A029 Needles control ... 48 3e-004
gb|CO200901.1|CO200901 RTCNT2_2_G06.b1_A029 Root control 2 ... 48 3e-004
gb|CO367346.1|CO367346 RTK1_33_F05.g1_A029 Roots minus pota... 48 3e-004
gb|CV034016.1|CV034016 RTNACL1_38_B11.b1_A029 Roots plus ad... 48 3e-004
gb|CV034082.1|CV034082 RTNACL1_38_B11.g1_A029 Roots plus ad... 48 3e-004
gb|CX646534.1|CX646534 COLD1_10_A05.b1_A029 Root cold Pinus... 48 3e-004
gb|CX646616.1|CX646616 COLD1_10_A05.g1_A029 Root cold Pinus... 48 3e-004
gb|CX648339.1|CX648339 COLD1_28_B12.b1_A029 Root cold Pinus... 48 3e-004
gb|CX648418.1|CX648418 COLD1_28_B12.g1_A029 Root cold Pinus... 48 3e-004
gb|DR057870.1|DR057870 RTNIT1_8_G05.b1_A029 Roots minus nit... 48 3e-004
gb|DR057958.1|DR057958 RTNIT1_8_G05.g1_A029 Roots minus nit... 48 3e-004
gb|DR111427.1|DR111427 RTS1_17_F02.g1_A029 Roots minus sulf... 48 3e-004
gb|DR164052.1|DR164052 RTFE1_46_B11.g1_A029 Roots minus iro... 48 3e-004
gb|DR167833.1|DR167833 RTPHOS1_21_A06.g1_A029 Roots minus p... 48 3e-004
gb|DR168212.1|DR168212 RTPHOS1_23_H12.g1_A029 Roots minus p... 48 3e-004
gb|DR178268.1|DR178268 RTMNUT1_10_C01.g1_A029 Roots minus m... 48 3e-004
gb|DR179654.1|DR179654 RTMNUT1_23_B05.g2_A029 Roots minus m... 48 3e-004
gb|DR387764.1|DR387764 RTHG1_24_A11.b1_A029 Roots plus adde... 48 3e-004
gb|DR387774.1|DR387774 RTHG1_24_B11.b1_A029 Roots plus adde... 48 3e-004
gb|DR690028.1|DR690028 EST1080114 Normalized pine embryo li... 48 3e-004
gb|DT635793.1|DT635793 EST1150724 Normalized pine embryo li... 48 3e-004
gb|CX647457.1|CX647457 COLD1_16_B04.g1_A029 Root cold Pinus... 46 0.001
gb|DR051127.1|DR051127 RTBOR1_27_G08.g1_A029 Roots plus add... 46 0.001
gb|DR167401.1|DR167401 RTPHOS1_18_C09.g1_A029 Roots minus p... 46 0.001
gb|CF387233.1|CF387233 RTDR1_11_B07.g1_A015 Loblolly pine r... 44 0.004
gb|CN852309.1|CN852309 Pi148-1 Salicylate-treated slash pin... 44 0.004
gb|CO164694.1|CO164694 FLD1_49_E04.g1_A029 Root flooded Pin... 44 0.004
gb|CO175228.1|CO175228 NDL1_53_H05.b1_A029 Needles control ... 44 0.004
gb|CO361899.1|CO361899 NDL2_7_G04.g1_A029 Needles control 2... 44 0.004
gb|DR020641.1|DR020641 STRS1_38_G12.b1_A034 Shoot tip pitch... 44 0.004
gb|DR020720.1|DR020720 STRS1_38_G12.g1_A034 Shoot tip pitch... 44 0.004
gb|DR059561.1|DR059561 RTNIT1_18_A02.g1_A029 Roots minus ni... 44 0.004
gb|DR081462.1|DR081462 RTFEPL1_29_G04.g1_A029 Roots plus ad... 44 0.004
gb|DR117116.1|DR117116 RTMG1_4_G10.g1_A029 Roots minus magn... 44 0.004
gb|DR161238.1|DR161238 RTFE1_10_D10.g1_A029 Roots minus iro... 44 0.004
gb|DR685654.1|DR685654 EST1075731 Normalized pine embryo li... 44 0.004
gb|DR694473.1|DR694473 EST1084565 Normalized pine embryo li... 44 0.004
gb|DT638742.1|DT638742 EST1153673 Normalized pine embryo li... 44 0.004
gb|AW065064.1|AW065064 ST39B10 Pine TriplEx shoot tip libra... 42 0.017
gb|CF396127.1|CF396127 RTDS2_13_D06.g1_A021 Drought-stresse... 42 0.017
gb|CF478238.1|CF478238 RTWW3_19_H07.g1_A022 Well-watered lo... 42 0.017
gb|CN783759.1|CN783759 EST782450 Sequencing ESTs from loblo... 42 0.017
gb|CV138259.1|CV138259 EST849468 Sequencing ESTs from loblo... 42 0.017
gb|DN448288.1|DN448288 EST944087 Sequencing ESTs from loblo... 42 0.017
gb|DN463162.1|DN463162 EST958961 Sequencing ESTs from loblo... 42 0.017
gb|DR016135.1|DR016135 STRS1_7_H08.g1_A034 Shoot tip pitch ... 42 0.017
gb|DR052727.1|DR052727 RTCA1_6_B03.g1_A029 Roots minus calc... 42 0.017
gb|DR109956.1|DR109956 RTS1_1_B02.b1_A029 Roots minus sulfu... 42 0.017
gb|DR117421.1|DR117421 RTMG1_6_G12.g1_A029 Roots minus magn... 42 0.017
gb|DR117678.1|DR117678 RTMG1_8_A10.g1_A029 Roots minus magn... 42 0.017
gb|DR117679.1|DR117679 RTMG1_8_A11.g1_A029 Roots minus magn... 42 0.017
gb|DT625580.1|DT625580 EST1157504 Sequencing ESTs from lobl... 42 0.017
gb|DT624539.1|DT624539 EST1158826 Sequencing ESTs from lobl... 42 0.017
gb|BX250447.1|BX250447 BX250447 Pinus pinaster differenciat... 40 0.067
gb|BE520012.1|BE520012 NXCI_028_B03_F NXCI (Nsf Xylem Compr... 40 0.067
gb|BF517838.1|BF517838 NXSI_027_G09_F NXSI (Nsf Xylem Side ... 40 0.067
gb|CF387084.1|CF387084 RTDR1_10_E10.g1_A015 Loblolly pine r... 40 0.067
gb|CF388213.1|CF388213 RTDR2_1_B07.g1_A021 Loblolly pine ro... 40 0.067
gb|CF390133.1|CF390133 RTDR2_12_C07.g1_A021 Loblolly pine r... 40 0.067
gb|CF393225.1|CF393225 RTDR3_17_D12.g1_A022 Loblolly pine r... 40 0.067
gb|CF401126.1|CF401126 RTWW1_10_H02.b1_A015 Well-watered lo... 40 0.067
gb|CF472757.1|CF472757 RTDS1_11_D09.g1_A015 Drought-stresse... 40 0.067
gb|BX681391.1|BX681391 BX681391 RS Pinus pinaster cDNA clon... 40 0.067
gb|CO172303.1|CO172303 NDL1_28_G10.g1_A029 Needles control ... 40 0.067
gb|CO173202.1|CO173202 NDL1_34_E01.g1_A029 Needles control ... 40 0.067
gb|CO365658.1|CO365658 RTK1_18_A01.g1_A029 Roots minus pota... 40 0.067
gb|CO367106.1|CO367106 RTK1_32_E03.b1_A029 Roots minus pota... 40 0.067
gb|CO367178.1|CO367178 RTK1_32_E03.g1_A029 Roots minus pota... 40 0.067
gb|CX650454.1|CX650454 COLD1_45_F10.g1_A029 Root cold Pinus... 40 0.067
gb|DR011035.1|DR011035 HEAT1_3_A03.b1_A029 Root at 37 C for... 40 0.067
gb|DR014845.1|DR014845 HEAT1_52_A11.b1_A029 Root at 37 C fo... 40 0.067
gb|DR014928.1|DR014928 HEAT1_52_A11.g1_A029 Root at 37 C fo... 40 0.067
gb|DR015213.1|DR015213 STRS1_2_D10.b1_A034 Shoot tip pitch ... 40 0.067
gb|DR015297.1|DR015297 STRS1_2_D10.g1_A034 Shoot tip pitch ... 40 0.067
gb|DR023090.1|DR023090 STRS1_55_A05.g1_A034 Shoot tip pitch... 40 0.067
gb|DR024153.1|DR024153 STRS1_62_E05.g1_A034 Shoot tip pitch... 40 0.067
gb|DR059765.1|DR059765 RTNIT1_19_D08.g1_A029 Roots minus ni... 40 0.067
gb|DR060728.1|DR060728 RTNIT1_29_D06.g1_A029 Roots minus ni... 40 0.067
gb|DR071883.1|DR071883 RTDK1_22_E02.g1_A029 Roots, dark Pin... 40 0.067
gb|DR099264.1|DR099264 STRR1_54_G08.b1_A033 Stem Response R... 40 0.067
gb|DR099337.1|DR099337 STRR1_54_G08.g1_A033 Stem Response R... 40 0.067
gb|DR111240.1|DR111240 RTS1_16_G05.b1_A029 Roots minus sulf... 40 0.067
gb|DR161362.1|DR161362 RTFE1_11_H03.b1_A029 Roots minus iro... 40 0.067
gb|DR161451.1|DR161451 RTFE1_11_H03.g1_A029 Roots minus iro... 40 0.067
gb|DR694707.1|DR694707 EST1084799 Normalized pine embryo li... 40 0.067
gb|DT638995.1|DT638995 EST1153926 Normalized pine embryo li... 40 0.067
gb|AY356372.1| Pinus taeda R2R3-MYB transcription factor (M... 40 0.067
gb|CF389505.1|CF389505 RTDR2_7_B04.g1_A021 Loblolly pine ro... 38 0.27
gb|CX649846.1|CX649846 COLD1_41_G10.g1_A029 Root cold Pinus... 38 0.27
gb|DR016697.1|DR016697 STRS1_11_D08.g1_A034 Shoot tip pitch... 38 0.27
gb|DR101912.1|DR101912 STRR1_76_E01.g1_A033 Stem Response R... 38 0.27
gb|DR691943.1|DR691943 EST1082030 Normalized pine embryo li... 38 0.27
gb|DT637034.1|DT637034 EST1151965 Normalized pine embryo li... 38 0.27
emb|CR378032.1| Pinus pinaster SSR, clone PPB1E12 38 0.27
>gb|CF391408.1|CF391408 RTDR3_1_E10.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_1_E10_A022 5', mRNA
sequence
Length = 818
Score = 56.0 bits (28), Expect = 1e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 217 gaaccgacaacgacatcaagaactactggaac 248
||||||||||||| ||||||||||||||||||
Sbjct: 329 gaaccgacaacgaaatcaagaactactggaac 360
>gb|CF394327.1|CF394327 RTDS2_4_B08.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_4_B08_A021 5', mRNA sequence
Length = 493
Score = 56.0 bits (28), Expect = 1e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 217 gaaccgacaacgacatcaagaactactggaac 248
||||||||||||| ||||||||||||||||||
Sbjct: 343 gaaccgacaacgaaatcaagaactactggaac 374
>gb|CF395727.1|CF395727 RTDS2_16_B07.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_16_B07_A021 5', mRNA sequence
Length = 782
Score = 56.0 bits (28), Expect = 1e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 217 gaaccgacaacgacatcaagaactactggaac 248
||||||||||||| ||||||||||||||||||
Sbjct: 362 gaaccgacaacgaaatcaagaactactggaac 393
>gb|CF397272.1|CF397272 RTDS3_2_C01.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_2_C01_A022 5', mRNA sequence
Length = 598
Score = 56.0 bits (28), Expect = 1e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 217 gaaccgacaacgacatcaagaactactggaac 248
||||||||||||| ||||||||||||||||||
Sbjct: 328 gaaccgacaacgaaatcaagaactactggaac 359
>gb|DR161095.1|DR161095 RTFE1_9_G03.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_9_G03_A029 5', mRNA sequence
Length = 760
Score = 56.0 bits (28), Expect = 1e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 222 gacaacgacatcaagaactactggaacacccacctcaaga 261
|||||||| |||||||||||||||||| ||||| ||||||
Sbjct: 350 gacaacgagatcaagaactactggaactcccacatcaaga 389
>gb|AW065119.1|AW065119 ST39H05 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST39H05, mRNA sequence
Length = 586
Score = 52.0 bits (26), Expect = 2e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 217 gaaccgacaacgacatcaagaactactggaacac 250
|||| |||||||| ||||||||||||||||||||
Sbjct: 370 gaacagacaacgaaatcaagaactactggaacac 403
>gb|CF668816.1|CF668816 RTCNT1_38_G11.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_38_G11_A029 5', mRNA sequence
Length = 814
Score = 52.0 bits (26), Expect = 2e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 217 gaaccgacaacgacatcaagaactactggaacac 250
|||| |||||||| ||||||||||||||||||||
Sbjct: 300 gaacagacaacgaaatcaagaactactggaacac 333
>gb|CO170303.1|CO170303 NDL1_13_D05.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_13_D05_A029 3', mRNA sequence
Length = 798
Score = 52.0 bits (26), Expect = 2e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 217 gaaccgacaacgacatcaagaactactggaacac 250
|||| |||||||| ||||||||||||||||||||
Sbjct: 464 gaacagacaacgaaatcaagaactactggaacac 431
>gb|CO368639.1|CO368639 RTK1_41_H02.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_41_H02_A029 5', mRNA sequence
Length = 782
Score = 52.0 bits (26), Expect = 2e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 217 gaaccgacaacgacatcaagaactactggaacac 250
|||| ||||||||||| |||||||||||||||||
Sbjct: 707 gaacagacaacgacataaagaactactggaacac 740
>gb|DR058733.1|DR058733 RTNIT1_13_C07.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_13_C07_A029 5', mRNA sequence
Length = 592
Score = 52.0 bits (26), Expect = 2e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 217 gaaccgacaacgacatcaagaactactggaacac 250
|||| |||||||| ||||||||||||||||||||
Sbjct: 327 gaacagacaacgaaatcaagaactactggaacac 360
>gb|DR098778.1|DR098778 STRR1_47_G01.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_47_G01_A033 5', mRNA sequence
Length = 676
Score = 52.0 bits (26), Expect = 2e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 217 gaaccgacaacgacatcaagaactactggaacac 250
|||| |||||||| ||||||||||||||||||||
Sbjct: 297 gaacagacaacgaaatcaagaactactggaacac 330
>gb|DR686108.1|DR686108 EST1076186 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABC41 3' end, mRNA sequence
Length = 752
Score = 52.0 bits (26), Expect = 2e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 217 gaaccgacaacgacatcaagaactactggaacac 250
|||| ||||||||||| |||||||||||||||||
Sbjct: 452 gaacagacaacgacataaagaactactggaacac 485
>gb|DR694940.1|DR694940 EST1085033 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEI64 3' end, mRNA sequence
Length = 848
Score = 52.0 bits (26), Expect = 2e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 217 gaaccgacaacgacatcaagaactactggaacac 250
|||| |||||||| ||||||||||||||||||||
Sbjct: 389 gaacagacaacgaaatcaagaactactggaacac 422
>gb|DR744906.1|DR744906 RTCU1_25_E06.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_25_E06_A029 5', mRNA sequence
Length = 691
Score = 52.0 bits (26), Expect = 2e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 217 gaaccgacaacgacatcaagaactactggaacac 250
|||| ||||||||||| |||||||||||||||||
Sbjct: 421 gaacagacaacgacataaagaactactggaacac 454
>gb|DT633531.1|DT633531 EST1148462 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFV86 3' end, mRNA sequence
Length = 817
Score = 52.0 bits (26), Expect = 2e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 217 gaaccgacaacgacatcaagaactactggaacac 250
|||| ||||||||||| |||||||||||||||||
Sbjct: 460 gaacagacaacgacataaagaactactggaacac 493
>gb|DT639133.1|DT639133 EST1154064 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHN42 3' end, mRNA sequence
Length = 857
Score = 52.0 bits (26), Expect = 2e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 217 gaaccgacaacgacatcaagaactactggaacac 250
|||| |||||||| ||||||||||||||||||||
Sbjct: 397 gaacagacaacgaaatcaagaactactggaacac 430
>gb|CF391376.1|CF391376 RTDR3_1_G04.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_1_G04_A022 5', mRNA
sequence
Length = 480
Score = 50.1 bits (25), Expect = 7e-005
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 217 gaaccgacaacgacatcaagaactactggaacaccca 253
|||| |||||||| ||||||||||||||||| |||||
Sbjct: 394 gaactgacaacgagatcaagaactactggaataccca 430
>gb|CF474496.1|CF474496 RTWW2_9_D02.b1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_9_D02_A021 3', mRNA sequence
Length = 472
Score = 50.1 bits (25), Expect = 7e-005
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 217 gaaccgacaacgacatcaagaactactggaaca 249
|||| |||||||| |||||||||||||||||||
Sbjct: 367 gaacagacaacgaaatcaagaactactggaaca 335
>gb|CF667292.1|CF667292 RTCNT1_29_G02.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_29_G02_A029 3', mRNA sequence
Length = 681
Score = 50.1 bits (25), Expect = 7e-005
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 217 gaaccgacaacgacatcaagaactactggaacaccca 253
|||| ||||| || |||||||||||||||||||||||
Sbjct: 352 gaacagacaatgaaatcaagaactactggaacaccca 316
>gb|CO173370.1|CO173370 NDL1_35_F03.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_35_F03_A029 5', mRNA sequence
Length = 745
Score = 50.1 bits (25), Expect = 7e-005
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 217 gaaccgacaacgacatcaagaactactggaacacccacctcaagaagaa 265
|||| |||||||| || |||||||||||||||| ||| ||||||||||
Sbjct: 171 gaactgacaacgagataaagaactactggaacagtcacatcaagaagaa 219
>gb|CO361388.1|CO361388 NDL2_4_C06.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_4_C06_A029 5', mRNA sequence
Length = 840
Score = 50.1 bits (25), Expect = 7e-005
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 222 gacaacgacatcaagaactactggaacac 250
|||||||| ||||||||||||||||||||
Sbjct: 272 gacaacgaaatcaagaactactggaacac 300
>gb|CO361678.1|CO361678 NDL2_6_H01.b1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_6_H01_A029 3', mRNA sequence
Length = 830
Score = 50.1 bits (25), Expect = 7e-005
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 217 gaaccgacaacgacatcaagaactactggaacacccacctcaagaagaa 265
|||| |||||||| || |||||||||||||||| ||| ||||||||||
Sbjct: 286 gaactgacaacgagataaagaactactggaacagtcacatcaagaagaa 334
>gb|CO361758.1|CO361758 NDL2_6_H01.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_6_H01_A029 5', mRNA sequence
Length = 782
Score = 50.1 bits (25), Expect = 7e-005
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 217 gaaccgacaacgacatcaagaactactggaacacccacctcaagaagaa 265
|||| |||||||| || |||||||||||||||| ||| ||||||||||
Sbjct: 392 gaactgacaacgagataaagaactactggaacagtcacatcaagaagaa 440
>gb|DR101544.1|DR101544 STRR1_74_C02.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_74_C02_A033 3', mRNA sequence
Length = 817
Score = 50.1 bits (25), Expect = 7e-005
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 217 gaaccgacaacgacatcaagaactactggaacacccacctcaagaagaa 265
|||| |||||||| || |||||||||||||||| ||| ||||||||||
Sbjct: 148 gaactgacaacgagataaagaactactggaacagtcacatcaagaagaa 196
>gb|DR101609.1|DR101609 STRR1_74_C02.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_74_C02_A033 5', mRNA sequence
Length = 741
Score = 50.1 bits (25), Expect = 7e-005
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 217 gaaccgacaacgacatcaagaactactggaacacccacctcaagaagaa 265
|||| |||||||| || |||||||||||||||| ||| ||||||||||
Sbjct: 205 gaactgacaacgagataaagaactactggaacagtcacatcaagaagaa 253
>gb|DR111301.1|DR111301 RTS1_16_F03.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_16_F03_A029 5', mRNA sequence
Length = 729
Score = 50.1 bits (25), Expect = 7e-005
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 217 gaaccgacaacgacatcaagaactactggaacacccacctcaagaagaa 265
|||| |||||||| || |||||||||||||||| ||| ||||||||||
Sbjct: 309 gaactgacaacgagataaagaactactggaacagtcacatcaagaagaa 357
>gb|CF385274.1|CF385274 RTDR1_2_D01.g1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_2_D01_A015 5', mRNA
sequence
Length = 703
Score = 48.1 bits (24), Expect = 3e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 222 gacaacgacatcaagaactactggaacacccacctcaaga 261
|||||||| || ||||||||||||||||| ||| ||||||
Sbjct: 197 gacaacgagataaagaactactggaacactcacatcaaga 236
>gb|CF388652.1|CF388652 RTDR2_4_A10.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_4_A10_A021 5', mRNA
sequence
Length = 760
Score = 48.1 bits (24), Expect = 3e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 222 gacaacgacatcaagaactactggaacacccacctcaaga 261
|||||||| || ||||||||||||||||| ||| ||||||
Sbjct: 325 gacaacgagataaagaactactggaacactcacatcaaga 364
>gb|CF389081.1|CF389081 RTDR2_13_A10.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_13_A10_A021 5', mRNA
sequence
Length = 743
Score = 48.1 bits (24), Expect = 3e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 222 gacaacgacatcaagaactactggaacacccacctcaaga 261
|||||||| || ||||||||||||||||| ||| ||||||
Sbjct: 251 gacaacgagataaagaactactggaacactcacatcaaga 290
>gb|CF393923.1|CF393923 RTDS2_2_G07.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_2_G07_A021 3', mRNA sequence
Length = 668
Score = 48.1 bits (24), Expect = 3e-004
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 222 gacaacgacatcaagaactactggaacacccacctcaaga 261
|||||||| || ||||||||||||||||| ||| ||||||
Sbjct: 637 gacaacgagataaagaactactggaacactcacatcaaga 598
>gb|CF399612.1|CF399612 RTDS3_26_H01.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_26_H01_A022 5', mRNA sequence
Length = 387
Score = 48.1 bits (24), Expect = 3e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 217 gaaccgacaacgacatcaagaactactggaac 248
||||||||||||| |||||||||||||||||
Sbjct: 336 gaaccgacaacgaactcaagaactactggaac 367
>gb|CF400460.1|CF400460 RTWW1_5_H12.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_5_H12_A015 5', mRNA sequence
Length = 747
Score = 48.1 bits (24), Expect = 3e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 222 gacaacgacatcaagaactactggaacacccacctcaaga 261
|||||||| || ||||||||||||||||| ||| ||||||
Sbjct: 259 gacaacgagataaagaactactggaacactcacatcaaga 298
>gb|CF401736.1|CF401736 RTWW1_14_C05.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_14_C05_A015 5', mRNA sequence
Length = 792
Score = 48.1 bits (24), Expect = 3e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 222 gacaacgacatcaagaactactggaacacccacctcaaga 261
|||||||| || ||||||||||||||||| ||| ||||||
Sbjct: 294 gacaacgagataaagaactactggaacactcacatcaaga 333
>gb|CF402623.1|CF402623 RTWW1_21_B11.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_21_B11_A015 5', mRNA sequence
Length = 755
Score = 48.1 bits (24), Expect = 3e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 222 gacaacgacatcaagaactactggaacacccacctcaaga 261
|||||||| || ||||||||||||||||| ||| ||||||
Sbjct: 271 gacaacgagataaagaactactggaacactcacatcaaga 310
>gb|CO162411.1|CO162411 FLD1_35_D02.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_35_D02_A029 3', mRNA sequence
Length = 717
Score = 48.1 bits (24), Expect = 3e-004
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 222 gacaacgacatcaagaactactggaacacccacctcaaga 261
|||||||| || ||||||||||||||||| ||| ||||||
Sbjct: 505 gacaacgagataaagaactactggaacactcacatcaaga 466
>gb|CO162486.1|CO162486 FLD1_35_D02.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_35_D02_A029 5', mRNA sequence
Length = 779
Score = 48.1 bits (24), Expect = 3e-004
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 222 gacaacgacatcaagaactactggaacacccacctcaaga 261
|||||||| || ||||||||||||||||| ||| ||||||
Sbjct: 681 gacaacgagataaagaactactggaacactcacatcaaga 642
>gb|CO176256.1|CO176256 NDL1_60_G12.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_60_G12_A029 5', mRNA sequence
Length = 769
Score = 48.1 bits (24), Expect = 3e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 217 gaaccgacaacgacatcaagaactactggaac 248
|||| |||||||| ||||||||||||||||||
Sbjct: 340 gaacggacaacgaaatcaagaactactggaac 371
>gb|CO200901.1|CO200901 RTCNT2_2_G06.b1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_2_G06_A029 3', mRNA sequence
Length = 863
Score = 48.1 bits (24), Expect = 3e-004
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 222 gacaacgacatcaagaactactggaacacccacctcaaga 261
|||||||| ||||||||||||||||| ||||| ||||||
Sbjct: 525 gacaacgagatcaagaactactggaattcccacatcaaga 486
>gb|CO367346.1|CO367346 RTK1_33_F05.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_33_F05_A029 5', mRNA sequence
Length = 770
Score = 48.1 bits (24), Expect = 3e-004
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 222 gacaacgacatcaagaactactggaacacccacctcaaga 261
|||||||| || ||||||||||||||||| ||| ||||||
Sbjct: 726 gacaacgagataaagaactactggaacactcacatcaaga 687
>gb|CV034016.1|CV034016 RTNACL1_38_B11.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_38_B11_A029 3', mRNA sequence
Length = 821
Score = 48.1 bits (24), Expect = 3e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 222 gacaacgacatcaagaactactggaacacccacctcaaga 261
|||||||| || ||||||||||||||||| ||| ||||||
Sbjct: 46 gacaacgagataaagaactactggaacactcacatcaaga 85
>gb|CV034082.1|CV034082 RTNACL1_38_B11.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_38_B11_A029 5', mRNA sequence
Length = 734
Score = 48.1 bits (24), Expect = 3e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 222 gacaacgacatcaagaactactggaacacccacctcaaga 261
|||||||| || ||||||||||||||||| ||| ||||||
Sbjct: 302 gacaacgagataaagaactactggaacactcacatcaaga 341
>gb|CX646534.1|CX646534 COLD1_10_A05.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_10_A05_A029 3', mRNA sequence
Length = 785
Score = 48.1 bits (24), Expect = 3e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 222 gacaacgacatcaagaactactggaacacccacctcaaga 261
|||||||| || ||||||||||||||||| ||| ||||||
Sbjct: 26 gacaacgagataaagaactactggaacactcacatcaaga 65
>gb|CX646616.1|CX646616 COLD1_10_A05.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_10_A05_A029 5', mRNA sequence
Length = 887
Score = 48.1 bits (24), Expect = 3e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 222 gacaacgacatcaagaactactggaacacccacctcaaga 261
|||||||| || ||||||||||||||||| ||| ||||||
Sbjct: 294 gacaacgagataaagaactactggaacactcacatcaaga 333
>gb|CX648339.1|CX648339 COLD1_28_B12.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_28_B12_A029 3', mRNA sequence
Length = 868
Score = 48.1 bits (24), Expect = 3e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 222 gacaacgacatcaagaactactggaacacccacctcaaga 261
|||||||| || ||||||||||||||||| ||| ||||||
Sbjct: 91 gacaacgagataaagaactactggaacactcacatcaaga 130
>gb|CX648418.1|CX648418 COLD1_28_B12.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_28_B12_A029 5', mRNA sequence
Length = 868
Score = 48.1 bits (24), Expect = 3e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 222 gacaacgacatcaagaactactggaacacccacctcaaga 261
|||||||| || ||||||||||||||||| ||| ||||||
Sbjct: 306 gacaacgagataaagaactactggaacactcacatcaaga 345
>gb|DR057870.1|DR057870 RTNIT1_8_G05.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_8_G05_A029 3', mRNA sequence
Length = 802
Score = 48.1 bits (24), Expect = 3e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 222 gacaacgacatcaagaactactggaacacccacctcaaga 261
|||||||| || ||||||||||||||||| ||| ||||||
Sbjct: 45 gacaacgagataaagaactactggaacactcacatcaaga 84
>gb|DR057958.1|DR057958 RTNIT1_8_G05.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_8_G05_A029 5', mRNA sequence
Length = 849
Score = 48.1 bits (24), Expect = 3e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 222 gacaacgacatcaagaactactggaacacccacctcaaga 261
|||||||| || ||||||||||||||||| ||| ||||||
Sbjct: 262 gacaacgagataaagaactactggaacactcacatcaaga 301
>gb|DR111427.1|DR111427 RTS1_17_F02.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_17_F02_A029 5', mRNA sequence
Length = 630
Score = 48.1 bits (24), Expect = 3e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 222 gacaacgacatcaagaactactggaacacccacctcaaga 261
|||||||| || ||||||||||||||||| ||| ||||||
Sbjct: 311 gacaacgagataaagaactactggaacactcacatcaaga 350
>gb|DR164052.1|DR164052 RTFE1_46_B11.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_46_B11_A029 5', mRNA sequence
Length = 834
Score = 48.1 bits (24), Expect = 3e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 222 gacaacgacatcaagaactactggaacacccacctcaaga 261
|||||||| || ||||||||||||||||| ||| ||||||
Sbjct: 342 gacaacgagataaagaactactggaacactcacatcaaga 381
>gb|DR167833.1|DR167833 RTPHOS1_21_A06.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_21_A06_A029 5', mRNA sequence
Length = 575
Score = 48.1 bits (24), Expect = 3e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 222 gacaacgacatcaagaactactggaacacccacctcaaga 261
|||||||| ||||||||||||||||| ||||| ||||||
Sbjct: 138 gacaacgagatcaagaactactggaattcccacatcaaga 177
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 45,783
Number of Sequences: 355925
Number of extensions: 45783
Number of successful extensions: 16810
Number of sequences better than 0.5: 130
Number of HSP's better than 0.5 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16639
Number of HSP's gapped (non-prelim): 171
length of query: 404
length of database: 217,277,237
effective HSP length: 18
effective length of query: 386
effective length of database: 210,870,587
effective search space: 81396046582
effective search space used: 81396046582
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)