BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8635730.2.1
(1031 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR161095.1|DR161095 RTFE1_9_G03.g1_A029 Roots minus iron... 62 5e-008
gb|CO200901.1|CO200901 RTCNT2_2_G06.b1_A029 Root control 2 ... 60 2e-007
gb|DR167833.1|DR167833 RTPHOS1_21_A06.g1_A029 Roots minus p... 60 2e-007
gb|CF387233.1|CF387233 RTDR1_11_B07.g1_A015 Loblolly pine r... 58 7e-007
gb|CN852309.1|CN852309 Pi148-1 Salicylate-treated slash pin... 58 7e-007
gb|CO164694.1|CO164694 FLD1_49_E04.g1_A029 Root flooded Pin... 58 7e-007
gb|DR117116.1|DR117116 RTMG1_4_G10.g1_A029 Roots minus magn... 58 7e-007
gb|DR161238.1|DR161238 RTFE1_10_D10.g1_A029 Roots minus iro... 58 7e-007
gb|CO176256.1|CO176256 NDL1_60_G12.g1_A029 Needles control ... 56 3e-006
gb|DR101912.1|DR101912 STRR1_76_E01.g1_A033 Stem Response R... 48 7e-004
gb|CF385274.1|CF385274 RTDR1_2_D01.g1_A015 Loblolly pine ro... 46 0.003
gb|CF388652.1|CF388652 RTDR2_4_A10.g1_A021 Loblolly pine ro... 46 0.003
gb|CF389081.1|CF389081 RTDR2_13_A10.g1_A021 Loblolly pine r... 46 0.003
gb|CF393923.1|CF393923 RTDS2_2_G07.b1_A021 Drought-stressed... 46 0.003
gb|CF400460.1|CF400460 RTWW1_5_H12.g1_A015 Well-watered lob... 46 0.003
gb|CF401736.1|CF401736 RTWW1_14_C05.g1_A015 Well-watered lo... 46 0.003
gb|CF402623.1|CF402623 RTWW1_21_B11.g1_A015 Well-watered lo... 46 0.003
gb|CO162411.1|CO162411 FLD1_35_D02.b1_A029 Root flooded Pin... 46 0.003
gb|CO162486.1|CO162486 FLD1_35_D02.g1_A029 Root flooded Pin... 46 0.003
gb|CO361388.1|CO361388 NDL2_4_C06.g1_A029 Needles control 2... 46 0.003
gb|CO367346.1|CO367346 RTK1_33_F05.g1_A029 Roots minus pota... 46 0.003
gb|CV034016.1|CV034016 RTNACL1_38_B11.b1_A029 Roots plus ad... 46 0.003
gb|CV034082.1|CV034082 RTNACL1_38_B11.g1_A029 Roots plus ad... 46 0.003
gb|CX646534.1|CX646534 COLD1_10_A05.b1_A029 Root cold Pinus... 46 0.003
gb|CX646616.1|CX646616 COLD1_10_A05.g1_A029 Root cold Pinus... 46 0.003
gb|CX648339.1|CX648339 COLD1_28_B12.b1_A029 Root cold Pinus... 46 0.003
gb|CX648418.1|CX648418 COLD1_28_B12.g1_A029 Root cold Pinus... 46 0.003
gb|DR057870.1|DR057870 RTNIT1_8_G05.b1_A029 Roots minus nit... 46 0.003
gb|DR057958.1|DR057958 RTNIT1_8_G05.g1_A029 Roots minus nit... 46 0.003
gb|DR110104.1|DR110104 RTS1_8_C03.g1_A029 Roots minus sulfu... 46 0.003
gb|DR111427.1|DR111427 RTS1_17_F02.g1_A029 Roots minus sulf... 46 0.003
gb|DR168212.1|DR168212 RTPHOS1_23_H12.g1_A029 Roots minus p... 46 0.003
gb|DR178268.1|DR178268 RTMNUT1_10_C01.g1_A029 Roots minus m... 46 0.003
gb|DR179654.1|DR179654 RTMNUT1_23_B05.g2_A029 Roots minus m... 46 0.003
gb|DR387764.1|DR387764 RTHG1_24_A11.b1_A029 Roots plus adde... 46 0.003
gb|DR387774.1|DR387774 RTHG1_24_B11.b1_A029 Roots plus adde... 46 0.003
gb|BX250447.1|BX250447 BX250447 Pinus pinaster differenciat... 44 0.011
gb|BF517838.1|BF517838 NXSI_027_G09_F NXSI (Nsf Xylem Side ... 44 0.011
gb|CF387084.1|CF387084 RTDR1_10_E10.g1_A015 Loblolly pine r... 44 0.011
gb|CF388213.1|CF388213 RTDR2_1_B07.g1_A021 Loblolly pine ro... 44 0.011
gb|CF401126.1|CF401126 RTWW1_10_H02.b1_A015 Well-watered lo... 44 0.011
gb|BX681391.1|BX681391 BX681391 RS Pinus pinaster cDNA clon... 44 0.011
gb|CX650454.1|CX650454 COLD1_45_F10.g1_A029 Root cold Pinus... 44 0.011
gb|DR024153.1|DR024153 STRS1_62_E05.g1_A034 Shoot tip pitch... 44 0.011
gb|DR060728.1|DR060728 RTNIT1_29_D06.g1_A029 Roots minus ni... 44 0.011
gb|DR111240.1|DR111240 RTS1_16_G05.b1_A029 Roots minus sulf... 44 0.011
gb|AW065119.1|AW065119 ST39H05 Pine TriplEx shoot tip libra... 42 0.045
gb|BQ701670.1|BQ701670 NXSI_118_C02_F NXSI (Nsf Xylem Side ... 42 0.045
gb|CF474496.1|CF474496 RTWW2_9_D02.b1_A021 Well-watered lob... 42 0.045
gb|CF667045.1|CF667045 RTCNT1_27_G11.g1_A029 Root control P... 42 0.045
gb|CF668816.1|CF668816 RTCNT1_38_G11.g1_A029 Root control P... 42 0.045
gb|CO170303.1|CO170303 NDL1_13_D05.b1_A029 Needles control ... 42 0.045
gb|CO368639.1|CO368639 RTK1_41_H02.g1_A029 Roots minus pota... 42 0.045
gb|DR014691.1|DR014691 HEAT1_51_B07.b1_A029 Root at 37 C fo... 42 0.045
gb|DR014768.1|DR014768 HEAT1_51_B07.g1_A029 Root at 37 C fo... 42 0.045
gb|DR017577.1|DR017577 STRS1_17_E03.b1_A034 Shoot tip pitch... 42 0.045
gb|DR017658.1|DR017658 STRS1_17_E03.g1_A034 Shoot tip pitch... 42 0.045
gb|DR058733.1|DR058733 RTNIT1_13_C07.g1_A029 Roots minus ni... 42 0.045
gb|DR098778.1|DR098778 STRR1_47_G01.g1_A033 Stem Response R... 42 0.045
gb|DR117421.1|DR117421 RTMG1_6_G12.g1_A029 Roots minus magn... 42 0.045
gb|DR117678.1|DR117678 RTMG1_8_A10.g1_A029 Roots minus magn... 42 0.045
gb|DR117679.1|DR117679 RTMG1_8_A11.g1_A029 Roots minus magn... 42 0.045
gb|DR177927.1|DR177927 RTMNUT1_8_E11.b1_A029 Roots minus mi... 42 0.045
gb|DR686108.1|DR686108 EST1076186 Normalized pine embryo li... 42 0.045
gb|DR694940.1|DR694940 EST1085033 Normalized pine embryo li... 42 0.045
gb|DR744906.1|DR744906 RTCU1_25_E06.g1_A029 Roots plus adde... 42 0.045
gb|DT633531.1|DT633531 EST1148462 Normalized pine embryo li... 42 0.045
gb|DT639133.1|DT639133 EST1154064 Normalized pine embryo li... 42 0.045
gb|CF474572.1|CF474572 RTWW2_9_B03.g1_A021 Well-watered lob... 40 0.18
gb|CF667292.1|CF667292 RTCNT1_29_G02.b1_A029 Root control P... 40 0.18
gb|DR016612.1|DR016612 STRS1_11_D05.b1_A034 Shoot tip pitch... 40 0.18
gb|DR052727.1|DR052727 RTCA1_6_B03.g1_A029 Roots minus calc... 40 0.18
gb|DR684712.1|DR684712 EST1074789 Normalized pine embryo li... 40 0.18
gb|DT632135.1|DT632135 EST1147066 Normalized pine embryo li... 40 0.18
>gb|DR161095.1|DR161095 RTFE1_9_G03.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_9_G03_A029 5', mRNA sequence
Length = 760
Score = 61.9 bits (31), Expect = 5e-008
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 148 cccggacggacggacaacgacgtcaagaactactggaac 186
|||||||||||||||||||| |||||||||||||||||
Sbjct: 338 cccggacggacggacaacgagatcaagaactactggaac 376
>gb|CO200901.1|CO200901 RTCNT2_2_G06.b1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_2_G06_A029 3', mRNA sequence
Length = 863
Score = 60.0 bits (30), Expect = 2e-007
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 148 cccggacggacggacaacgacgtcaagaactactggaa 185
|||||||||||||||||||| ||||||||||||||||
Sbjct: 537 cccggacggacggacaacgagatcaagaactactggaa 500
>gb|DR167833.1|DR167833 RTPHOS1_21_A06.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_21_A06_A029 5', mRNA sequence
Length = 575
Score = 60.0 bits (30), Expect = 2e-007
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 148 cccggacggacggacaacgacgtcaagaactactggaa 185
|||||||||||||||||||| ||||||||||||||||
Sbjct: 126 cccggacggacggacaacgagatcaagaactactggaa 163
>gb|CF387233.1|CF387233 RTDR1_11_B07.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_11_B07_A015 5', mRNA
sequence
Length = 652
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 148 cccggacggacggacaacgacgtcaagaactactggaacac 188
|||||||||||||||||||| | |||||||||||||||||
Sbjct: 103 cccggacggacggacaacgagataaagaactactggaacac 143
>gb|CN852309.1|CN852309 Pi148-1 Salicylate-treated slash pine seedlings Pinus elliottii
cDNA, mRNA sequence
Length = 270
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 148 cccggacggacggacaacgacgtcaagaactactggaacac 188
|||||||||||||||||||| | |||||||||||||||||
Sbjct: 214 cccggacggacggacaacgagataaagaactactggaacac 254
>gb|CO164694.1|CO164694 FLD1_49_E04.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_49_E04_A029 5', mRNA sequence
Length = 916
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 148 cccggacggacggacaacgacgtcaagaactactggaacac 188
|||||||||||||||||||| | |||||||||||||||||
Sbjct: 43 cccggacggacggacaacgagataaagaactactggaacac 83
>gb|DR117116.1|DR117116 RTMG1_4_G10.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_4_G10_A029 5', mRNA sequence
Length = 805
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 148 cccggacggacggacaacgacgtcaagaactactggaacac 188
|||||||||||||||||||| | |||||||||||||||||
Sbjct: 310 cccggacggacggacaacgagataaagaactactggaacac 350
>gb|DR161238.1|DR161238 RTFE1_10_D10.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_10_D10_A029 5', mRNA sequence
Length = 766
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 148 cccggacggacggacaacgacgtcaagaactactggaacac 188
|||||||||||||||||||| | |||||||||||||||||
Sbjct: 309 cccggacggacggacaacgagataaagaactactggaacac 349
>gb|CO176256.1|CO176256 NDL1_60_G12.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_60_G12_A029 5', mRNA sequence
Length = 769
Score = 56.0 bits (28), Expect = 3e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 143 gactccccggacggacggacaacgacgtcaagaactactggaac 186
||||||| ||||| ||||||||||| |||||||||||||||||
Sbjct: 328 gactccctggacgaacggacaacgaaatcaagaactactggaac 371
>gb|DR101912.1|DR101912 STRR1_76_E01.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_76_E01_A033 5', mRNA sequence
Length = 574
Score = 48.1 bits (24), Expect = 7e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 151 ggacggacggacaacgacgtcaagaactactggaac 186
||||||||||||||||| | |||||||||||||||
Sbjct: 1 ggacggacggacaacgagataaagaactactggaac 36
>gb|CF385274.1|CF385274 RTDR1_2_D01.g1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_2_D01_A015 5', mRNA
sequence
Length = 703
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 154 cggacggacaacgacgtcaagaactactggaacac 188
|||||||||||||| | |||||||||||||||||
Sbjct: 191 cggacggacaacgagataaagaactactggaacac 225
>gb|CF388652.1|CF388652 RTDR2_4_A10.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_4_A10_A021 5', mRNA
sequence
Length = 760
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 154 cggacggacaacgacgtcaagaactactggaacac 188
|||||||||||||| | |||||||||||||||||
Sbjct: 319 cggacggacaacgagataaagaactactggaacac 353
>gb|CF389081.1|CF389081 RTDR2_13_A10.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_13_A10_A021 5', mRNA
sequence
Length = 743
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 154 cggacggacaacgacgtcaagaactactggaacac 188
|||||||||||||| | |||||||||||||||||
Sbjct: 245 cggacggacaacgagataaagaactactggaacac 279
>gb|CF393923.1|CF393923 RTDS2_2_G07.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_2_G07_A021 3', mRNA sequence
Length = 668
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 154 cggacggacaacgacgtcaagaactactggaacac 188
|||||||||||||| | |||||||||||||||||
Sbjct: 643 cggacggacaacgagataaagaactactggaacac 609
>gb|CF400460.1|CF400460 RTWW1_5_H12.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_5_H12_A015 5', mRNA sequence
Length = 747
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 154 cggacggacaacgacgtcaagaactactggaacac 188
|||||||||||||| | |||||||||||||||||
Sbjct: 253 cggacggacaacgagataaagaactactggaacac 287
>gb|CF401736.1|CF401736 RTWW1_14_C05.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_14_C05_A015 5', mRNA sequence
Length = 792
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 154 cggacggacaacgacgtcaagaactactggaacac 188
|||||||||||||| | |||||||||||||||||
Sbjct: 288 cggacggacaacgagataaagaactactggaacac 322
>gb|CF402623.1|CF402623 RTWW1_21_B11.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_21_B11_A015 5', mRNA sequence
Length = 755
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 154 cggacggacaacgacgtcaagaactactggaacac 188
|||||||||||||| | |||||||||||||||||
Sbjct: 265 cggacggacaacgagataaagaactactggaacac 299
>gb|CO162411.1|CO162411 FLD1_35_D02.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_35_D02_A029 3', mRNA sequence
Length = 717
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 154 cggacggacaacgacgtcaagaactactggaacac 188
|||||||||||||| | |||||||||||||||||
Sbjct: 511 cggacggacaacgagataaagaactactggaacac 477
>gb|CO162486.1|CO162486 FLD1_35_D02.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_35_D02_A029 5', mRNA sequence
Length = 779
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 154 cggacggacaacgacgtcaagaactactggaacac 188
|||||||||||||| | |||||||||||||||||
Sbjct: 687 cggacggacaacgagataaagaactactggaacac 653
>gb|CO361388.1|CO361388 NDL2_4_C06.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_4_C06_A029 5', mRNA sequence
Length = 840
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 154 cggacggacaacgacgtcaagaactactggaacac 188
||||| |||||||| |||||||||||||||||||
Sbjct: 266 cggacagacaacgaaatcaagaactactggaacac 300
>gb|CO367346.1|CO367346 RTK1_33_F05.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_33_F05_A029 5', mRNA sequence
Length = 770
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 154 cggacggacaacgacgtcaagaactactggaacac 188
|||||||||||||| | |||||||||||||||||
Sbjct: 732 cggacggacaacgagataaagaactactggaacac 698
>gb|CV034016.1|CV034016 RTNACL1_38_B11.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_38_B11_A029 3', mRNA sequence
Length = 821
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 154 cggacggacaacgacgtcaagaactactggaacac 188
|||||||||||||| | |||||||||||||||||
Sbjct: 40 cggacggacaacgagataaagaactactggaacac 74
>gb|CV034082.1|CV034082 RTNACL1_38_B11.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_38_B11_A029 5', mRNA sequence
Length = 734
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 154 cggacggacaacgacgtcaagaactactggaacac 188
|||||||||||||| | |||||||||||||||||
Sbjct: 296 cggacggacaacgagataaagaactactggaacac 330
>gb|CX646534.1|CX646534 COLD1_10_A05.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_10_A05_A029 3', mRNA sequence
Length = 785
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 154 cggacggacaacgacgtcaagaactactggaacac 188
|||||||||||||| | |||||||||||||||||
Sbjct: 20 cggacggacaacgagataaagaactactggaacac 54
>gb|CX646616.1|CX646616 COLD1_10_A05.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_10_A05_A029 5', mRNA sequence
Length = 887
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 154 cggacggacaacgacgtcaagaactactggaacac 188
|||||||||||||| | |||||||||||||||||
Sbjct: 288 cggacggacaacgagataaagaactactggaacac 322
>gb|CX648339.1|CX648339 COLD1_28_B12.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_28_B12_A029 3', mRNA sequence
Length = 868
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 154 cggacggacaacgacgtcaagaactactggaacac 188
|||||||||||||| | |||||||||||||||||
Sbjct: 85 cggacggacaacgagataaagaactactggaacac 119
>gb|CX648418.1|CX648418 COLD1_28_B12.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_28_B12_A029 5', mRNA sequence
Length = 868
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 154 cggacggacaacgacgtcaagaactactggaacac 188
|||||||||||||| | |||||||||||||||||
Sbjct: 300 cggacggacaacgagataaagaactactggaacac 334
>gb|DR057870.1|DR057870 RTNIT1_8_G05.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_8_G05_A029 3', mRNA sequence
Length = 802
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 154 cggacggacaacgacgtcaagaactactggaacac 188
|||||||||||||| | |||||||||||||||||
Sbjct: 39 cggacggacaacgagataaagaactactggaacac 73
>gb|DR057958.1|DR057958 RTNIT1_8_G05.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_8_G05_A029 5', mRNA sequence
Length = 849
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 154 cggacggacaacgacgtcaagaactactggaacac 188
|||||||||||||| | |||||||||||||||||
Sbjct: 256 cggacggacaacgagataaagaactactggaacac 290
>gb|DR110104.1|DR110104 RTS1_8_C03.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_8_C03_A029 5', mRNA sequence
Length = 538
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 146 tccccggacggacggacaacgacgtcaagaactactggaacac 188
||||||| || || |||||||| || |||||||||||||||||
Sbjct: 483 tccccggccgaacagacaacgaagtaaagaactactggaacac 525
>gb|DR111427.1|DR111427 RTS1_17_F02.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_17_F02_A029 5', mRNA sequence
Length = 630
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 154 cggacggacaacgacgtcaagaactactggaacac 188
|||||||||||||| | |||||||||||||||||
Sbjct: 305 cggacggacaacgagataaagaactactggaacac 339
>gb|DR168212.1|DR168212 RTPHOS1_23_H12.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_23_H12_A029 5', mRNA sequence
Length = 600
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 154 cggacggacaacgacgtcaagaactactggaacac 188
|||||||||||||| | |||||||||||||||||
Sbjct: 297 cggacggacaacgagataaagaactactggaacac 331
>gb|DR178268.1|DR178268 RTMNUT1_10_C01.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_10_C01_A029 5', mRNA sequence
Length = 719
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 154 cggacggacaacgacgtcaagaactactggaacac 188
|||||||||||||| | |||||||||||||||||
Sbjct: 283 cggacggacaacgagataaagaactactggaacac 317
>gb|DR179654.1|DR179654 RTMNUT1_23_B05.g2_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_23_B05_A029 5', mRNA sequence
Length = 685
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 154 cggacggacaacgacgtcaagaactactggaacac 188
|||||||||||||| | |||||||||||||||||
Sbjct: 207 cggacggacaacgagataaagaactactggaacac 241
>gb|DR387764.1|DR387764 RTHG1_24_A11.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_24_A11_A029 3', mRNA sequence
Length = 796
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 154 cggacggacaacgacgtcaagaactactggaacac 188
|||||||||||||| | |||||||||||||||||
Sbjct: 497 cggacggacaacgagataaagaactactggaacac 463
>gb|DR387774.1|DR387774 RTHG1_24_B11.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_24_B11_A029 3', mRNA sequence
Length = 781
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 154 cggacggacaacgacgtcaagaactactggaacac 188
|||||||||||||| | |||||||||||||||||
Sbjct: 473 cggacggacaacgagataaagaactactggaacac 439
>gb|BX250447.1|BX250447 BX250447 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP037A09, mRNA sequence
Length = 399
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 148 cccggacggacggacaacgacgtcaagaactactggaa 185
||||| |||||||||||||| | ||||||||||||||
Sbjct: 117 cccgggcggacggacaacgagataaagaactactggaa 154
>gb|BF517838.1|BF517838 NXSI_027_G09_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_027_G09 5' similar to Arabidopsis thaliana
sequence At4g38620 putative transcription factor (MYB4)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 494
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 148 cccggacggacggacaacgacgtcaagaactactggaa 185
||||| |||||||||||||| | ||||||||||||||
Sbjct: 381 cccgggcggacggacaacgagataaagaactactggaa 418
>gb|CF387084.1|CF387084 RTDR1_10_E10.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_10_E10_A015 5', mRNA
sequence
Length = 733
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 148 cccggacggacggacaacgacgtcaagaactactggaa 185
||||| |||||||||||||| | ||||||||||||||
Sbjct: 300 cccgggcggacggacaacgagataaagaactactggaa 337
>gb|CF388213.1|CF388213 RTDR2_1_B07.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_1_B07_A021 5', mRNA
sequence
Length = 712
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 148 cccggacggacggacaacgacgtcaagaactactggaa 185
||||| |||||||||||||| | ||||||||||||||
Sbjct: 342 cccgggcggacggacaacgagataaagaactactggaa 379
>gb|CF401126.1|CF401126 RTWW1_10_H02.b1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_10_H02_A015 3', mRNA sequence
Length = 620
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 148 cccggacggacggacaacgacgtcaagaactactggaa 185
||||| |||||||||||||| | ||||||||||||||
Sbjct: 319 cccgggcggacggacaacgagataaagaactactggaa 282
>gb|BX681391.1|BX681391 BX681391 RS Pinus pinaster cDNA clone RS58C06, mRNA sequence
Length = 605
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 148 cccggacggacggacaacgacgtcaagaactactggaa 185
||||| |||||||||||||| | ||||||||||||||
Sbjct: 288 cccgggcggacggacaacgagataaagaactactggaa 325
>gb|CX650454.1|CX650454 COLD1_45_F10.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_45_F10_A029 5', mRNA sequence
Length = 826
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 148 cccggacggacggacaacgacgtcaagaactactggaa 185
||||| |||||||||||||| | ||||||||||||||
Sbjct: 331 cccgggcggacggacaacgagataaagaactactggaa 368
>gb|DR024153.1|DR024153 STRS1_62_E05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_62_E05_A034 5', mRNA sequence
Length = 791
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 148 cccggacggacggacaacgacgtcaagaactactggaa 185
||||| |||||||||||||| | ||||||||||||||
Sbjct: 326 cccgggcggacggacaacgagataaagaactactggaa 363
>gb|DR060728.1|DR060728 RTNIT1_29_D06.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_29_D06_A029 5', mRNA sequence
Length = 726
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 148 cccggacggacggacaacgacgtcaagaactactggaa 185
||||| |||||||||||||| | ||||||||||||||
Sbjct: 314 cccgggcggacggacaacgagataaagaactactggaa 351
>gb|DR111240.1|DR111240 RTS1_16_G05.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_16_G05_A029 3', mRNA sequence
Length = 625
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 148 cccggacggacggacaacgacgtcaagaactactggaa 185
||||| |||||||||||||| | ||||||||||||||
Sbjct: 350 cccgggcggacggacaacgagataaagaactactggaa 313
>gb|AW065119.1|AW065119 ST39H05 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST39H05, mRNA sequence
Length = 586
Score = 42.1 bits (21), Expect = 0.045
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 160 gacaacgacgtcaagaactactggaacac 188
|||||||| |||||||||||||||||||
Sbjct: 375 gacaacgaaatcaagaactactggaacac 403
>gb|BQ701670.1|BQ701670 NXSI_118_C02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_118_C02 5' similar to Arabidopsis thaliana
sequence At4g38620 putative transcription factor (MYB4)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 549
Score = 42.1 bits (21), Expect = 0.045
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 148 cccggacggacggacaacgacgtcaagaactactggaacac 188
||||| |||||||||||||| | |||||| ||||||||||
Sbjct: 314 cccgggcggacggacaacgagataaagaaccactggaacac 354
>gb|CF474496.1|CF474496 RTWW2_9_D02.b1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_9_D02_A021 3', mRNA sequence
Length = 472
Score = 42.1 bits (21), Expect = 0.045
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 151 ggacggacggacaacgacgtcaagaactactggaaca 187
||||| || |||||||| ||||||||||||||||||
Sbjct: 371 ggacgaacagacaacgaaatcaagaactactggaaca 335
>gb|CF667045.1|CF667045 RTCNT1_27_G11.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_27_G11_A029 5', mRNA sequence
Length = 744
Score = 42.1 bits (21), Expect = 0.045
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 148 cccggacggacggacaacgacgtcaagaactactggaacac 188
||||| |||||||||||||| | |||||| ||||||||||
Sbjct: 291 cccgggcggacggacaacgagataaagaaccactggaacac 331
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 103,962
Number of Sequences: 355925
Number of extensions: 103962
Number of successful extensions: 32959
Number of sequences better than 0.5: 74
Number of HSP's better than 0.5 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32884
Number of HSP's gapped (non-prelim): 75
length of query: 1031
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1012
effective length of database: 210,514,662
effective search space: 213040837944
effective search space used: 213040837944
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)