BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8011540.2.1
(1916 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR017202.1|DR017202 STRS1_14_E08.g1_A034 Shoot tip pitch... 192 4e-047
gb|DR691139.1|DR691139 EST1081225 Normalized pine embryo li... 192 4e-047
gb|DT636541.1|DT636541 EST1151472 Normalized pine embryo li... 192 4e-047
dbj|BD266925.1| Compositions isolated from plant cells and ... 192 4e-047
gb|CO361947.1|CO361947 NDL2_8_D04.b1_A029 Needles control 2... 176 2e-042
gb|CF665519.1|CF665519 RTCNT1_16_B07.g1_A029 Root control P... 149 5e-034
gb|DR017123.1|DR017123 STRS1_14_E08.b1_A034 Shoot tip pitch... 141 1e-031
gb|CF402640.1|CF402640 RTWW1_21_H11.g1_A015 Well-watered lo... 133 3e-029
gb|DR386897.1|DR386897 RTHG1_18_D02.b1_A029 Roots plus adde... 121 1e-025
gb|AW758723.1|AW758723 NXNV_086_F04_F Nsf Xylem Normal wood... 101 1e-019
dbj|BD267216.1| Compositions isolated from plant cells and ... 98 2e-018
gb|CF665437.1|CF665437 RTCNT1_16_B07.b1_A029 Root control P... 92 1e-016
gb|CV031602.1|CV031602 RTNACL1_2_C06.g1_A029 Roots plus add... 64 2e-008
gb|BX681938.1|BX681938 BX681938 RS Pinus pinaster cDNA clon... 58 1e-006
gb|BF220688.1|BF220688 NXCI_151_F10_F NXCI (Nsf Xylem Compr... 54 2e-005
gb|CF477737.1|CF477737 RTWW3_9_A05.g1_A022 Well-watered lob... 54 2e-005
gb|CO160253.1|CO160253 FLD1_19_F06.g1_A029 Root flooded Pin... 54 2e-005
gb|CO363779.1|CO363779 RTK1_11_F05.g1_A029 Roots minus pota... 54 2e-005
gb|CX653244.1|CX653244 COLD1_64_G06.b1_A029 Root cold Pinus... 52 9e-005
dbj|BD267251.1| Compositions isolated from plant cells and ... 52 9e-005
gb|CO165153.1|CO165153 FLD1_52_E09.g1_A029 Root flooded Pin... 48 0.001
gb|CO362134.1|CO362134 RTK1_1_B05.g1_A029 Roots minus potas... 48 0.001
gb|CO362143.1|CO362143 RTK1_1_C05.g1_A029 Roots minus potas... 48 0.001
gb|CX713189.1|CX713189 RTPQ1_7_C01.g1_A032 Roots treated wi... 48 0.001
gb|DR023990.1|DR023990 STRS1_61_C03.g1_A034 Shoot tip pitch... 48 0.001
gb|DR689742.1|DR689742 EST1079828 Normalized pine embryo li... 48 0.001
gb|DT635371.1|DT635371 EST1150302 Normalized pine embryo li... 48 0.001
dbj|BD266928.1| Compositions isolated from plant cells and ... 48 0.001
dbj|BD267272.1| Compositions isolated from plant cells and ... 48 0.001
gb|AW011134.1|AW011134 ST17B03 Pine TriplEx shoot tip libra... 46 0.005
gb|AW755068.1|AW755068 PC10D11 Pine TriplEx pollen cone lib... 46 0.005
gb|AW981611.1|AW981611 PC14F06 Pine TriplEx pollen cone lib... 46 0.005
gb|BG275597.1|BG275597 NXSI_143_G06_F NXSI (Nsf Xylem Side ... 46 0.005
gb|BG317674.1|BG317674 NXPV_004_E01_F NXPV (Nsf Xylem Plani... 46 0.005
gb|BG317994.1|BG317994 NXPV_008_C03_F NXPV (Nsf Xylem Plani... 46 0.005
gb|BI077116.1|BI077116 NXPV_087_G11_F NXPV (Nsf Xylem Plani... 46 0.005
gb|BI643875.1|BI643875 NXPV_126_C10_F NXPV (Nsf Xylem Plani... 46 0.005
gb|BM428106.1|BM428106 NXRV_008_H01_F NXRV (Nsf Xylem Root ... 46 0.005
gb|BQ634741.1|BQ634741 NXRV072_F12_F NXRV (Nsf Xylem Root w... 46 0.005
gb|BQ695540.1|BQ695540 NXPV_025_G04_F NXPV (Nsf Xylem Plani... 46 0.005
gb|BQ696803.1|BQ696803 NXPV_045_D08_F NXPV (Nsf Xylem Plani... 46 0.005
gb|CF389137.1|CF389137 RTDR2_13_C10.g1_A021 Loblolly pine r... 46 0.005
gb|CF393965.1|CF393965 RTDS2_2_F01.g1_A021 Drought-stressed... 46 0.005
gb|CF476467.1|CF476467 RTWW3_1_E07.g1_A022 Well-watered lob... 46 0.005
gb|BX676964.1|BX676964 BX676964 RN Pinus pinaster cDNA clon... 46 0.005
gb|BX681022.1|BX681022 BX681022 RS Pinus pinaster cDNA clon... 46 0.005
gb|BX681862.1|BX681862 BX681862 RS Pinus pinaster cDNA clon... 46 0.005
gb|CR392502.1|CR392502 CR392502 RN Pinus pinaster cDNA clon... 46 0.005
gb|CO162164.1|CO162164 FLD1_33_C06.g1_A029 Root flooded Pin... 46 0.005
gb|CO162471.1|CO162471 FLD1_35_B05.g1_A029 Root flooded Pin... 46 0.005
gb|CO164989.1|CO164989 FLD1_51_D01.g1_A029 Root flooded Pin... 46 0.005
gb|CO169185.1|CO169185 NDL1_5_G05.b1_A029 Needles control P... 46 0.005
gb|CO169264.1|CO169264 NDL1_5_G05.g1_A029 Needles control P... 46 0.005
gb|CO169948.1|CO169948 NDL1_10_E04.g1_A029 Needles control ... 46 0.005
gb|CO198733.1|CO198733 GEO1_16_C10.b1_A029 Root gravitropis... 46 0.005
gb|CO200452.1|CO200452 GEO2_7_B12.g1_A032 Root gravitropism... 46 0.005
gb|CO200656.1|CO200656 GEO2_8_E12.g1_A032 Root gravitropism... 46 0.005
gb|CO361539.1|CO361539 NDL2_5_A11.g1_A029 Needles control 2... 46 0.005
gb|CO362330.1|CO362330 RTK1_2_H08.g1_A029 Roots minus potas... 46 0.005
gb|CO363405.1|CO363405 RTK1_9_C03.g1_A029 Roots minus potas... 46 0.005
gb|CO367318.1|CO367318 RTK1_33_C11.g1_A029 Roots minus pota... 46 0.005
gb|CO368983.1|CO368983 RTK1_44_D12.b1_A029 Roots minus pota... 46 0.005
gb|CO370286.1|CO370286 RTK1_66_H06.g1_A029 Roots minus pota... 46 0.005
gb|CX647836.1|CX647836 COLD1_20_D11.g1_A029 Root cold Pinus... 46 0.005
gb|CX649542.1|CX649542 COLD1_35_H12.g1_A029 Root cold Pinus... 46 0.005
gb|CX653077.1|CX653077 COLD1_63_F09.b1_A029 Root cold Pinus... 46 0.005
gb|CX653127.1|CX653127 COLD1_63_C05.g1_A029 Root cold Pinus... 46 0.005
gb|CX712487.1|CX712487 RTPQ1_2_G04.g2_A032 Roots treated wi... 46 0.005
gb|CX712905.1|CX712905 RTPQ1_5_C11.g1_A032 Roots treated wi... 46 0.005
gb|CX715629.1|CX715629 RTPQ1_35_B02.g1_A032 Roots treated w... 46 0.005
gb|DR012842.1|DR012842 HEAT1_15_G10.b1_A029 Root at 37 C fo... 46 0.005
gb|DR019112.1|DR019112 STRS1_27_H04.g1_A034 Shoot tip pitch... 46 0.005
gb|DR019521.1|DR019521 STRS1_30_D04.g1_A034 Shoot tip pitch... 46 0.005
gb|DR019545.1|DR019545 STRS1_30_F09.g1_A034 Shoot tip pitch... 46 0.005
gb|DR021599.1|DR021599 STRS1_45_F04.g1_A034 Shoot tip pitch... 46 0.005
gb|DR023574.1|DR023574 STRS1_58_C12.g1_A034 Shoot tip pitch... 46 0.005
gb|DR024556.1|DR024556 STRS1_65_F12.g1_A034 Shoot tip pitch... 46 0.005
gb|DR025124.1|DR025124 STRS1_69_F01.g1_A034 Shoot tip pitch... 46 0.005
gb|DR025480.1|DR025480 STRS1_71_G12.g1_A034 Shoot tip pitch... 46 0.005
gb|DR051683.1|DR051683 RTBOR1_31_E07.g1_A029 Roots plus add... 46 0.005
gb|DR054960.1|DR054960 RTCA1_20_E02.g1_A029 Roots minus cal... 46 0.005
gb|DR068906.1|DR068906 RTDK1_3_C11.g1_A029 Roots, dark Pinu... 46 0.005
gb|DR069339.1|DR069339 RTDK1_6_D01.g1_A029 Roots, dark Pinu... 46 0.005
gb|DR079325.1|DR079325 RTFEPL1_10_C05.g1_A029 Roots plus ad... 46 0.005
gb|DR094274.1|DR094274 STRR1_13_C03.g1_A033 Stem Response R... 46 0.005
gb|DR096114.1|DR096114 STRR1_25_G04.g1_A033 Stem Response R... 46 0.005
gb|DR159911.1|DR159911 RTFE1_2_A07.g1_A029 Roots minus iron... 46 0.005
gb|DR159912.1|DR159912 RTFE1_2_A08.g1_A029 Roots minus iron... 46 0.005
gb|DR161113.1|DR161113 RTFE1_9_H12.g1_A029 Roots minus iron... 46 0.005
gb|DR164212.1|DR164212 RTFE1_47_B12.g1_A029 Roots minus iro... 46 0.005
gb|DR166786.1|DR166786 RTPHOS1_14_A07.g1_A029 Roots minus p... 46 0.005
gb|DR385265.1|DR385265 RTHG1_7_D04.g1_A029 Roots plus added... 46 0.005
gb|DR385885.1|DR385885 RTHG1_11_A10.g1_A029 Roots plus adde... 46 0.005
gb|DR387179.1|DR387179 RTHG1_20_B03.b1_A029 Roots plus adde... 46 0.005
gb|DR387457.1|DR387457 RTHG1_21_H06.g2_A029 Roots plus adde... 46 0.005
gb|DR388109.1|DR388109 RTHG1_26_E11.b1_A029 Roots plus adde... 46 0.005
gb|DR388368.1|DR388368 RTHG1_27_G06.g1_A029 Roots plus adde... 46 0.005
gb|DR389139.1|DR389139 RTHG1_32_D12.g1_A029 Roots plus adde... 46 0.005
gb|DR693682.1|DR693682 EST1083771 Normalized pine embryo li... 46 0.005
gb|DR745279.1|DR745279 RTCU1_28_F07.b1_A029 Roots plus adde... 46 0.005
gb|DT628023.1|DT628023 EST1156772 Subtracted pine embryo li... 46 0.005
gb|DT638296.1|DT638296 EST1153227 Normalized pine embryo li... 46 0.005
gb|CV032802.1|CV032802 RTNACL1_18_A04.g1_A029 Roots plus ad... 44 0.021
emb|CR378097.1| Pinus pinaster SSR, clone PPB2E07 44 0.021
gb|BQ699984.1|BQ699984 NXRV132_F02_F NXRV (Nsf Xylem Root w... 42 0.083
gb|CF394975.1|CF394975 RTDS2_8_D05.g1_A021 Drought-stressed... 42 0.083
gb|CF671297.1|CF671297 RTCNT1_56_D05.b1_A029 Root control P... 42 0.083
gb|CO161769.1|CO161769 FLD1_31_B12.b1_A029 Root flooded Pin... 42 0.083
gb|CO166244.1|CO166244 FLD1_60_B04.g1_A029 Root flooded Pin... 42 0.083
gb|CV034080.1|CV034080 RTNACL1_38_B08.g1_A029 Roots plus ad... 42 0.083
gb|CX653319.1|CX653319 COLD1_64_G06.g1_A029 Root cold Pinus... 42 0.083
gb|DR110333.1|DR110333 RTS1_10_G02.b1_A029 Roots minus sulf... 42 0.083
gb|DR110424.1|DR110424 RTS1_10_G02.g1_A029 Roots minus sulf... 42 0.083
gb|DR177364.1|DR177364 RTMNUT1_4_H09.g1_A029 Roots minus mi... 42 0.083
gb|DR388305.1|DR388305 RTHG1_27_A03.g1_A029 Roots plus adde... 42 0.083
gb|BF517514.1|BF517514 NXSI_025_A11_F NXSI (Nsf Xylem Side ... 40 0.33
gb|CO198328.1|CO198328 GEO1_12_H10.g1_A029 Root gravitropis... 40 0.33
gb|DR051070.1|DR051070 RTBOR1_27_B01.g1_A029 Roots plus add... 40 0.33
gb|DR096246.1|DR096246 STRR1_26_E11.g1_A033 Stem Response R... 40 0.33
dbj|BD266926.1| Compositions isolated from plant cells and ... 40 0.33
>gb|DR017202.1|DR017202 STRS1_14_E08.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_14_E08_A034 5', mRNA sequence
Length = 616
Score = 192 bits (97), Expect = 4e-047
Identities = 286/349 (81%)
Strand = Plus / Plus
Query: 1451 tgggatctgcaagaggtctttcttacttgcatgatcactgcgatcctaagatcatccatc 1510
|||| |||||||||||||| || |||||||||||||| || ||||||||||| || || |
Sbjct: 98 tgggttctgcaagaggtctctcctacttgcatgatcattgtgatcctaagattattcacc 157
Query: 1511 gggatgtcaaagctgcaaatattcttttggatgaggagtttgaggcagtcgtaggtgatt 1570
|||||||||| ||||| || || | ||||||| || | ||||||||| || || ||||
Sbjct: 158 gggatgtcaaggctgctaacatcttactggatgaagaatatgaggcagtggtgggggatt 217
Query: 1571 tcgggcttgccaagcttatggactacaaggatacccatgtcacaactgctgttcgtggaa 1630
| || | || || |||||||| || ||||| || ||||| || || |||||||||||||
Sbjct: 218 ttggcttggcaaaacttatggattataaggacacacatgttacgacggctgttcgtggaa 277
Query: 1631 caattggacacattgctcccgagtacctatccactggcaagtcctctgaaaagaccgatg 1690
| ||||| ||||| || || |||||||| || ||||| ||||| || |||||||| || |
Sbjct: 278 ccattggccacatagcacctgagtacctttctactggaaagtcttcggaaaagacagacg 337
Query: 1691 tttttggatatgggatcatgcttctggagcttattactggacagagggcatttgatctag 1750
| ||||||||||| |||||| | ||||| |||||||| ||||| |||||||||| || |
Sbjct: 338 tatttggatatggaatcatgttgctggaacttattacgggacaacgggcatttgaccttg 397
Query: 1751 ctcgtcttgcaaatgatgatgatgttatgcttcttgactgggtgaaagg 1799
| ||| | ||||||||||||||||| ||| | ||||||||||| |||||
Sbjct: 398 cacgtttagcaaatgatgatgatgtcatgttgcttgactgggttaaagg 446
>gb|DR691139.1|DR691139 EST1081225 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAD472 3' end, mRNA sequence
Length = 680
Score = 192 bits (97), Expect = 4e-047
Identities = 286/349 (81%)
Strand = Plus / Plus
Query: 1451 tgggatctgcaagaggtctttcttacttgcatgatcactgcgatcctaagatcatccatc 1510
|||| |||||||||||||| || |||||||||||||| || ||||||||||| || || |
Sbjct: 318 tgggttctgcaagaggtctctcctacttgcatgatcattgtgatcctaagattattcacc 377
Query: 1511 gggatgtcaaagctgcaaatattcttttggatgaggagtttgaggcagtcgtaggtgatt 1570
|||||||||| ||||| || || | ||||||| || | ||||||||| || || ||||
Sbjct: 378 gggatgtcaaggctgctaacatcttactggatgaagaatatgaggcagtggtgggggatt 437
Query: 1571 tcgggcttgccaagcttatggactacaaggatacccatgtcacaactgctgttcgtggaa 1630
| || | || || |||||||| || ||||| || ||||| || || |||||||||||||
Sbjct: 438 ttggcttggcaaaacttatggattataaggacacacatgttacgacggctgttcgtggaa 497
Query: 1631 caattggacacattgctcccgagtacctatccactggcaagtcctctgaaaagaccgatg 1690
| ||||| ||||| || || |||||||| || ||||| ||||| || |||||||| || |
Sbjct: 498 ccattggccacatagcacctgagtacctttctactggaaagtcttcggaaaagacagacg 557
Query: 1691 tttttggatatgggatcatgcttctggagcttattactggacagagggcatttgatctag 1750
| ||||||||||| |||||| | ||||| |||||||| ||||| |||||||||| || |
Sbjct: 558 tatttggatatggaatcatgttgctggaacttattacgggacaacgggcatttgaccttg 617
Query: 1751 ctcgtcttgcaaatgatgatgatgttatgcttcttgactgggtgaaagg 1799
| ||| | ||||||||||||||||| ||| | ||||||||||| |||||
Sbjct: 618 cacgtttagcaaatgatgatgatgtcatgttgcttgactgggttaaagg 666
Score = 143 bits (72), Expect = 3e-032
Identities = 186/224 (83%)
Strand = Plus / Plus
Query: 1156 agaggtggttttggaaaagtgtacaagggaaggcttgctgatggctcattggtagcagtg 1215
||||||||||||||||| |||||||| || | ||||| ||||| || ||||| || ||
Sbjct: 23 agaggtggttttggaaaggtgtacaaagggcgccttgcagatggttccttggtggctgta 82
Query: 1216 aaaagactaaaagaggagcgcacacctggtggtgagcttcagtttcaaacagaggttgag 1275
||| | || || || ||||| ||||| ||||| ||| | |||||||||||||| || |||
Sbjct: 83 aaacgtctgaaggaagagcgtacaccgggtggagagttgcagtttcaaacagaagtggag 142
Query: 1276 atgattagcatggcagtgcacaggaaccttctccgacttcgtggtttctgcatgacacct 1335
||||| ||||||||||| || |||||||| || ||||| ||||| ||||||||||||||
Sbjct: 143 atgataagcatggcagtacataggaacctccttcgactacgtggattctgcatgacaccc 202
Query: 1336 actgaacggttgctggtctacccatacatggctaatggcagtgt 1379
||||||||| |||| || || || |||||||| ||||| |||||
Sbjct: 203 actgaacggctgcttgtttatccctacatggccaatggaagtgt 246
>gb|DT636541.1|DT636541 EST1151472 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGT05 3' end, mRNA sequence
Length = 812
Score = 192 bits (97), Expect = 4e-047
Identities = 286/349 (81%)
Strand = Plus / Plus
Query: 1451 tgggatctgcaagaggtctttcttacttgcatgatcactgcgatcctaagatcatccatc 1510
|||| |||||||||||||| || |||||||||||||| || ||||||||||| || || |
Sbjct: 326 tgggttctgcaagaggtctctcctacttgcatgatcattgtgatcctaagattattcacc 385
Query: 1511 gggatgtcaaagctgcaaatattcttttggatgaggagtttgaggcagtcgtaggtgatt 1570
|||||||||| ||||| || || | ||||||| || | ||||||||| || || ||||
Sbjct: 386 gggatgtcaaggctgctaacatcttactggatgaagaatatgaggcagtggtgggggatt 445
Query: 1571 tcgggcttgccaagcttatggactacaaggatacccatgtcacaactgctgttcgtggaa 1630
| || | || || |||||||| || ||||| || ||||| || || |||||||||||||
Sbjct: 446 ttggcttggcaaaacttatggattataaggacacacatgttacgacggctgttcgtggaa 505
Query: 1631 caattggacacattgctcccgagtacctatccactggcaagtcctctgaaaagaccgatg 1690
| ||||| ||||| || || |||||||| || ||||| ||||| || |||||||| || |
Sbjct: 506 ccattggccacatagcacctgagtacctttctactggaaagtcttcggaaaagacagacg 565
Query: 1691 tttttggatatgggatcatgcttctggagcttattactggacagagggcatttgatctag 1750
| ||||||||||| |||||| | ||||| |||||||| ||||| |||||||||| || |
Sbjct: 566 tatttggatatggaatcatgttgctggaacttattacgggacaacgggcatttgaccttg 625
Query: 1751 ctcgtcttgcaaatgatgatgatgttatgcttcttgactgggtgaaagg 1799
| ||| | ||||||||||||||||| ||| | ||||||||||| |||||
Sbjct: 626 cacgtttagcaaatgatgatgatgtcatgttgcttgactgggttaaagg 674
Score = 143 bits (72), Expect = 3e-032
Identities = 186/224 (83%)
Strand = Plus / Plus
Query: 1156 agaggtggttttggaaaagtgtacaagggaaggcttgctgatggctcattggtagcagtg 1215
||||||||||||||||| |||||||| || | ||||| ||||| || ||||| || ||
Sbjct: 31 agaggtggttttggaaaggtgtacaaagggcgccttgcagatggttccttggtggctgta 90
Query: 1216 aaaagactaaaagaggagcgcacacctggtggtgagcttcagtttcaaacagaggttgag 1275
||| | || || || ||||| ||||| ||||| ||| | |||||||||||||| || |||
Sbjct: 91 aaacgtctgaaggaagagcgtacaccgggtggagagttgcagtttcaaacagaagtggag 150
Query: 1276 atgattagcatggcagtgcacaggaaccttctccgacttcgtggtttctgcatgacacct 1335
||||| ||||||||||| || |||||||| || ||||| ||||| ||||||||||||||
Sbjct: 151 atgataagcatggcagtacataggaacctccttcgactacgtggattctgcatgacaccc 210
Query: 1336 actgaacggttgctggtctacccatacatggctaatggcagtgt 1379
||||||||| |||| || || || |||||||| ||||| |||||
Sbjct: 211 actgaacggctgcttgtttatccctacatggccaatggaagtgt 254
>dbj|BD266925.1| Compositions isolated from plant cells and utilization of the same in
modifying plant cell signal transduction
Length = 2868
Score = 192 bits (97), Expect = 4e-047
Identities = 286/349 (81%)
Strand = Plus / Plus
Query: 1451 tgggatctgcaagaggtctttcttacttgcatgatcactgcgatcctaagatcatccatc 1510
|||| |||||||||||||| || |||||||||||||| || ||||||||||| || || |
Sbjct: 1471 tgggttctgcaagaggtctctcctacttgcatgatcattgtgatcctaagattattcacc 1530
Query: 1511 gggatgtcaaagctgcaaatattcttttggatgaggagtttgaggcagtcgtaggtgatt 1570
|||||||||| ||||| || || | ||||||| || | ||||||||| || || ||||
Sbjct: 1531 gggatgtcaaggctgctaacatcttactggatgaagaatatgaggcagtggtgggggatt 1590
Query: 1571 tcgggcttgccaagcttatggactacaaggatacccatgtcacaactgctgttcgtggaa 1630
| || | || || |||||||| || ||||| || ||||| || || |||||||||||||
Sbjct: 1591 ttggcttggcaaaacttatggattataaggacacacatgttacgacggctgttcgtggaa 1650
Query: 1631 caattggacacattgctcccgagtacctatccactggcaagtcctctgaaaagaccgatg 1690
| ||||| ||||| || || |||||||| || ||||| ||||| || |||||||| || |
Sbjct: 1651 ccattggccacatagcacctgagtacctttctactggaaagtcttcggaaaagacagacg 1710
Query: 1691 tttttggatatgggatcatgcttctggagcttattactggacagagggcatttgatctag 1750
| ||||||||||| |||||| | ||||| |||||||| ||||| |||||||||| || |
Sbjct: 1711 tatttggatatggaatcatgttgctggaacttattacgggacaacgggcatttgaccttg 1770
Query: 1751 ctcgtcttgcaaatgatgatgatgttatgcttcttgactgggtgaaagg 1799
| ||| | ||||||||||||||||| ||| | ||||||||||| |||||
Sbjct: 1771 cacgtttagcaaatgatgatgatgtcatgttgcttgactgggttaaagg 1819
Score = 149 bits (75), Expect = 5e-034
Identities = 279/347 (80%)
Strand = Plus / Plus
Query: 1033 gagcatttcttcgatgttcctgccgaggaggatccagaagttcatcttggtcagctcaaa 1092
||||| ||||| ||||| ||||| |||||||||||||||||||| | || || || ||
Sbjct: 1053 gagcacttctttgatgtacctgctgaggaggatccagaagttcacttaggccaacttaag 1112
Query: 1093 aagttttcgttgcgggagcttcaagttgctactgatacttttagtaacaagcacatttta 1152
| ||| || || ||||| | || ||||| |||||| |||||| || | ||||| |
Sbjct: 1113 aggttctcattacgggaattacaggttgcaactgatggttttagcaatagaaacattctt 1172
Query: 1153 ggaagaggtggttttggaaaagtgtacaagggaaggcttgctgatggctcattggtagca 1212
|| ||||||||||||||||| |||||||| || | ||||| ||||| || ||||| ||
Sbjct: 1173 ggcagaggtggttttggaaaggtgtacaaagggcgccttgcagatggttccttggtggct 1232
Query: 1213 gtgaaaagactaaaagaggagcgcacacctggtggtgagcttcagtttcaaacagaggtt 1272
|| ||| | || || || ||||| ||||| ||||| ||| | |||||||||||||| ||
Sbjct: 1233 gtaaaacgtctgaaggaagagcgtacaccgggtggagagttgcagtttcaaacagaagtg 1292
Query: 1273 gagatgattagcatggcagtgcacaggaaccttctccgacttcgtggtttctgcatgaca 1332
|||||||| ||||||||||| || |||||||| || ||||| ||||| ||||||||||||
Sbjct: 1293 gagatgataagcatggcagtacataggaacctccttcgactacgtggattctgcatgaca 1352
Query: 1333 cctactgaacggttgctggtctacccatacatggctaatggcagtgt 1379
|| ||||||||| |||| || || || |||||||| ||||| |||||
Sbjct: 1353 cccactgaacggctgcttgtttatccctacatggccaatggaagtgt 1399
Score = 85.7 bits (43), Expect = 6e-015
Identities = 145/179 (81%)
Strand = Plus / Plus
Query: 370 cagagttgggattccactcttgttaatccatgtacatggtttcacgttacgtgtaacagc 429
|||||||||||| | || || || |||||||||||||||||||| ||||| || ||||
Sbjct: 375 cagagttgggatccaaccctcgtcaatccatgtacatggtttcatgttacatgcaacaat 434
Query: 430 gataacagtgttatcagagttgaccttggaaatgcacaattatctggcgtcctagtgcca 489
||||||||||| || ||||| ||| | |||||||||||| | ||||| | || ||
Sbjct: 435 gataacagtgtgataagagtggacttgggaaatgcacaactttctggttcattggttccc 494
Query: 490 cagcttggtcagctgaaaaatctccaatatttggagctttacagcaacaaaataagtgg 548
|||||||| | ||||| ||||| || || ||||||||||| |||||||| ||||||||
Sbjct: 495 cagcttggcctactgaacaatctgcagtacttggagctttatagcaacaatataagtgg 553
>gb|CO361947.1|CO361947 NDL2_8_D04.b1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_8_D04_A029 3', mRNA sequence
Length = 747
Score = 176 bits (89), Expect = 2e-042
Identities = 266/325 (81%)
Strand = Plus / Minus
Query: 1451 tgggatctgcaagaggtctttcttacttgcatgatcactgcgatcctaagatcatccatc 1510
|||| |||||||||||||| || |||||||||||||| || ||||||||||| || || |
Sbjct: 330 tgggttctgcaagaggtctctcctacttgcatgatcattgtgatcctaagattattcacc 271
Query: 1511 gggatgtcaaagctgcaaatattcttttggatgaggagtttgaggcagtcgtaggtgatt 1570
|||||||||| ||||| || || | ||||||| || | ||||||||| || || ||||
Sbjct: 270 gggatgtcaaggctgctaacatcttactggatgaagaatatgaggcagtggtgggggatt 211
Query: 1571 tcgggcttgccaagcttatggactacaaggatacccatgtcacaactgctgttcgtggaa 1630
| || | || || |||||||| || ||||| || ||||| || || |||||||||||||
Sbjct: 210 ttggcttggcaaaacttatggattataaggacacacatgttacgacggctgttcgtggaa 151
Query: 1631 caattggacacattgctcccgagtacctatccactggcaagtcctctgaaaagaccgatg 1690
| ||||| ||||| || || |||||||| || ||||| ||||| || |||||||| || |
Sbjct: 150 ccattggccacatagcacctgagtacctttctactggaaagtcttcggaaaagacagacg 91
Query: 1691 tttttggatatgggatcatgcttctggagcttattactggacagagggcatttgatctag 1750
| ||||||||||| |||||| | ||||| |||||||| ||||| |||||||||| || |
Sbjct: 90 tatttggatatggaatcatgttgctggaacttattacgggacaacgggcatttgaccttg 31
Query: 1751 ctcgtcttgcaaatgatgatgatgt 1775
| ||| | |||||||||||||||||
Sbjct: 30 cacgtttagcaaatgatgatgatgt 6
Score = 147 bits (74), Expect = 2e-033
Identities = 278/346 (80%)
Strand = Plus / Minus
Query: 1034 agcatttcttcgatgttcctgccgaggaggatccagaagttcatcttggtcagctcaaaa 1093
|||| ||||| ||||| ||||| |||||||||||||||||||| | || || || || |
Sbjct: 747 agcacttctttgatgtacctgctgaggaggatccagaagttcacttaggccaacttaaga 688
Query: 1094 agttttcgttgcgggagcttcaagttgctactgatacttttagtaacaagcacattttag 1153
||| || || ||||| | || ||||| |||||| |||||| || | ||||| | |
Sbjct: 687 ggttctcattacgggaattacaggttgcaactgatggttttagcaatagaaacattcttg 628
Query: 1154 gaagaggtggttttggaaaagtgtacaagggaaggcttgctgatggctcattggtagcag 1213
| ||||||||||||||||| |||||||| || | ||||| ||||| || ||||| || |
Sbjct: 627 gcagaggtggttttggaaaggtgtacaaagggcgccttgcagatggttccttggtggctg 568
Query: 1214 tgaaaagactaaaagaggagcgcacacctggtggtgagcttcagtttcaaacagaggttg 1273
| ||| | || || || ||||| ||||| ||||| ||| | |||||||||||||| || |
Sbjct: 567 taaaacgtctgaaggaagagcgtacaccgggtggagagttgcagtttcaaacagaagtgg 508
Query: 1274 agatgattagcatggcagtgcacaggaaccttctccgacttcgtggtttctgcatgacac 1333
||||||| ||||||||||| || |||||||| || ||||| ||||| |||||||||||||
Sbjct: 507 agatgataagcatggcagtacataggaacctccttcgactacgtggattctgcatgacac 448
Query: 1334 ctactgaacggttgctggtctacccatacatggctaatggcagtgt 1379
| ||||||||| |||| || || || |||||||| ||||| |||||
Sbjct: 447 ccactgaacggctgcttgtttatccctacatggccaatggaagtgt 402
>gb|CF665519.1|CF665519 RTCNT1_16_B07.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_16_B07_A029 5', mRNA sequence
Length = 651
Score = 149 bits (75), Expect = 5e-034
Identities = 279/347 (80%)
Strand = Plus / Plus
Query: 1033 gagcatttcttcgatgttcctgccgaggaggatccagaagttcatcttggtcagctcaaa 1092
||||| ||||| ||||| ||||| |||||||||||||||||||| | || || || ||
Sbjct: 294 gagcacttctttgatgtacctgctgaggaggatccagaagttcacttaggccaacttaag 353
Query: 1093 aagttttcgttgcgggagcttcaagttgctactgatacttttagtaacaagcacatttta 1152
| ||| || || ||||| | || ||||| |||||| |||||| || | ||||| |
Sbjct: 354 aggttctcattacgggaattacaggttgcaactgatggttttagcaatagaaacattctt 413
Query: 1153 ggaagaggtggttttggaaaagtgtacaagggaaggcttgctgatggctcattggtagca 1212
|| ||||||||||||||||| |||||||| || | ||||| ||||| || ||||| ||
Sbjct: 414 ggcagaggtggttttggaaaggtgtacaaagggcgccttgcagatggttccttggtggct 473
Query: 1213 gtgaaaagactaaaagaggagcgcacacctggtggtgagcttcagtttcaaacagaggtt 1272
|| ||| | || || || ||||| ||||| ||||| ||| | |||||||||||||| ||
Sbjct: 474 gtaaaacgtctgaaggaagagcgtacaccgggtggagagttgcagtttcaaacagaagtg 533
Query: 1273 gagatgattagcatggcagtgcacaggaaccttctccgacttcgtggtttctgcatgaca 1332
|||||||| ||||||||||| || |||||||| || ||||| ||||| ||||||||||||
Sbjct: 534 gagatgataagcatggcagtacataggaacctccttcgactacgtggattctgcatgaca 593
Query: 1333 cctactgaacggttgctggtctacccatacatggctaatggcagtgt 1379
|| ||||||||| |||| || || || |||||||| ||||| |||||
Sbjct: 594 cccactgaacggctgcttgtttatccctacatggccaatggaagtgt 640
>gb|DR017123.1|DR017123 STRS1_14_E08.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_14_E08_A034 3', mRNA sequence
Length = 866
Score = 141 bits (71), Expect = 1e-031
Identities = 179/215 (83%)
Strand = Plus / Plus
Query: 1585 cttatggactacaaggatacccatgtcacaactgctgttcgtggaacaattggacacatt 1644
|||||||| || ||||| || ||||| || || |||||||||||||| ||||| |||||
Sbjct: 34 cttatggattataaggacacacatgttacgacggctgttcgtggaaccattggccacata 93
Query: 1645 gctcccgagtacctatccactggcaagtcctctgaaaagaccgatgtttttggatatggg 1704
|| || |||||||| || ||||| ||||| || |||||||| || || |||||||||||
Sbjct: 94 gcacctgagtacctttctactggaaagtcttcggaaaagacagacgtatttggatatgga 153
Query: 1705 atcatgcttctggagcttattactggacagagggcatttgatctagctcgtcttgcaaat 1764
|||||| | ||||| |||||||| ||||| |||||||||| || || ||| | ||||||
Sbjct: 154 atcatgttgctggaacttattacgggacaacgggcatttgaccttgcacgtttagcaaat 213
Query: 1765 gatgatgatgttatgcttcttgactgggtgaaagg 1799
||||||||||| ||| | ||||||||||| |||||
Sbjct: 214 gatgatgatgtcatgttgcttgactgggttaaagg 248
>gb|CF402640.1|CF402640 RTWW1_21_H11.g1_A015 Well-watered loblolly pine roots WW1 Pinus taeda
cDNA clone RTWW1_21_H11_A015 5', mRNA sequence
Length = 614
Score = 133 bits (67), Expect = 3e-029
Identities = 178/215 (82%)
Strand = Plus / Plus
Query: 1585 cttatggactacaaggatacccatgtcacaactgctgttcgtggaacaattggacacatt 1644
|||||||| || ||||| || ||||| || || |||||||||||||| ||||| |||||
Sbjct: 317 cttatggattataaggacacacatgttacgacggctgttcgtggaaccattggccacata 376
Query: 1645 gctcccgagtacctatccactggcaagtcctctgaaaagaccgatgtttttggatatggg 1704
|| || |||||||| || ||||| ||||| || |||||||| | || |||||||||||
Sbjct: 377 gcacctgagtacctttctactggaaagtcttcggaaaagacacacgtatttggatatgga 436
Query: 1705 atcatgcttctggagcttattactggacagagggcatttgatctagctcgtcttgcaaat 1764
|||||| | ||||| |||||||| ||||| |||||||||| || || ||| | ||||||
Sbjct: 437 atcatgttgctggaacttattacgggacaacgggcatttgaccttgcgcgtttagcaaat 496
Query: 1765 gatgatgatgttatgcttcttgactgggtgaaagg 1799
||||||||||| ||| | ||||||||||| |||||
Sbjct: 497 gatgatgatgtcatgttgcttgactgggttaaagg 531
>gb|DR386897.1|DR386897 RTHG1_18_D02.b1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_18_D02_A029 3', mRNA sequence
Length = 831
Score = 121 bits (61), Expect = 1e-025
Identities = 181/221 (81%)
Strand = Plus / Plus
Query: 1579 gccaagcttatggactacaaggatacccatgtcacaactgctgttcgtggaacaattgga 1638
||||| |||||||| ||||||||||| ||||| || || ||| |||| |||||||||
Sbjct: 6 gccaaacttatggattacaaggatactcatgtgactacaaatgtctgtggtacaattgga 65
Query: 1639 cacattgctcccgagtacctatccactggcaagtcctctgaaaagaccgatgtttttgga 1698
||||| || || || ||||| || ||||| ||||| || |||||||| ||||| |||| |
Sbjct: 66 cacatagcaccggaatacctttctactggaaagtcttcagaaaagactgatgtatttgca 125
Query: 1699 tatgggatcatgcttctggagcttattactggacagagggcatttgatctagctcgtctt 1758
|||||||| ||| | ||||| |||| || ||||||||||||||||| || || || |
Sbjct: 126 tatgggattatgttgctggaaattatcacaggacagagggcatttgaccttgcacgatta 185
Query: 1759 gcaaatgatgatgatgttatgcttcttgactgggtgaaagg 1799
|||| |||||||||| | ||||||||||||||||| |||||
Sbjct: 186 gcaagtgatgatgatatcatgcttcttgactgggttaaagg 226
>gb|AW758723.1|AW758723 NXNV_086_F04_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV_086_F04 5' similar to Arabidopsis thaliana sequence
At1g34210 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 257
Score = 101 bits (51), Expect = 1e-019
Identities = 133/161 (82%)
Strand = Plus / Plus
Query: 1633 attggacacattgctcccgagtacctatccactggcaagtcctctgaaaagaccgatgtt 1692
||||| ||||| || || |||||||| || ||||| ||||| || |||||||| || ||
Sbjct: 5 attggccacatagcacctgagtacctttctactggaaagtcttcggaaaagacagacgta 64
Query: 1693 tttggatatgggatcatgcttctggagcttattactggacagagggcatttgatctagct 1752
||||||||||| |||||| | ||||| |||||||| ||||| |||||||||| || ||
Sbjct: 65 tttggatatggaatcatgttgctggaacttattacgggacaacgggcatttgaccttgca 124
Query: 1753 cgtcttgcaaatgatgatgatgttatgcttcttgactgggt 1793
||| ||||||||||||||||| ||| | |||||||||||
Sbjct: 125 cgtnnagcaaatgatgatgatgtcatgttgcttgactgggt 165
>dbj|BD267216.1| Compositions isolated from plant cells and utilization of the same in
modifying plant cell signal transduction
Length = 537
Score = 97.6 bits (49), Expect = 2e-018
Identities = 79/89 (88%)
Strand = Plus / Plus
Query: 1255 cagtttcaaacagaggttgagatgattagcatggcagtgcacaggaaccttctccgactt 1314
||||||||||||||||| |||||||| || |||||||| ||||||||||| ||||| |||
Sbjct: 280 cagtttcaaacagaggtggagatgatcagtatggcagtacacaggaacctcctccggctt 339
Query: 1315 cgtggtttctgcatgacacctactgaacg 1343
||||| ||||| ||| |||| ||||||||
Sbjct: 340 cgtgggttctgtatgtcaccaactgaacg 368
>gb|CF665437.1|CF665437 RTCNT1_16_B07.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_16_B07_A029 3', mRNA sequence
Length = 757
Score = 91.7 bits (46), Expect = 1e-016
Identities = 103/122 (84%)
Strand = Plus / Plus
Query: 1678 gaaaagaccgatgtttttggatatgggatcatgcttctggagcttattactggacagagg 1737
|||||||| || || ||||||||||| |||||| | ||||| |||||||| ||||| ||
Sbjct: 4 gaaaagacagacgtatttggatatggaatcatgttgctggaacttattacgggacaacgg 63
Query: 1738 gcatttgatctagctcgtcttgcaaatgatgatgatgttatgcttcttgactgggtgaaa 1797
|||||||| || || ||| | ||||||||||||||||| ||| | ||||||||||| |||
Sbjct: 64 gcatttgaccttgcacgtttagcaaatgatgatgatgtcatgttgcttgactgggttaaa 123
Query: 1798 gg 1799
||
Sbjct: 124 gg 125
>gb|CV031602.1|CV031602 RTNACL1_2_C06.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_2_C06_A029 5', mRNA sequence
Length = 831
Score = 63.9 bits (32), Expect = 2e-008
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 1736 gggcatttgatctagctcgtcttgcaaatgatgatgatgttatgcttcttgactgggtga 1795
|||||||||| || |||||| | ||||||||||||||||| ||| | ||||||||||| |
Sbjct: 1 gggcatttgaccttgctcgtttagcaaatgatgatgatgtcatgttgcttgactgggtta 60
Query: 1796 aagg 1799
||||
Sbjct: 61 aagg 64
>gb|BX681938.1|BX681938 BX681938 RS Pinus pinaster cDNA clone RS67A12, mRNA sequence
Length = 169
Score = 58.0 bits (29), Expect = 1e-006
Identities = 92/113 (81%)
Strand = Plus / Plus
Query: 1579 gccaagcttatggactacaaggatacccatgtcacaactgctgttcgtggaacaattgga 1638
||||| |||||||| ||||||||||| ||||| || || ||| |||| |||||||||
Sbjct: 54 gccaaacttatggattacaaggatactcatgtgactacaaatgtctgtggtacaattgga 113
Query: 1639 cacattgctcccgagtacctatccactggcaagtcctctgaaaagaccgatgt 1691
||||| || || || ||||| || ||||| ||||| || |||||||| |||||
Sbjct: 114 cacatagcaccggaatacctttctactggaaagtcttcagaaaagactgatgt 166
>gb|BF220688.1|BF220688 NXCI_151_F10_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_151_F10 5' similar to Arabidopsis
thaliana sequence At1g34210 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 521
Score = 54.0 bits (27), Expect = 2e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 394 aatccatgtacatggtttcacgttacgtgtaacagcgataacagtgt 440
|||||||||||||||||||| ||||| || |||| |||||||||||
Sbjct: 441 aatccatgtacatggtttcatgttacatgcaacaatgataacagtgt 487
>gb|CF477737.1|CF477737 RTWW3_9_A05.g1_A022 Well-watered loblolly pine roots WW3 Pinus taeda
cDNA clone RTWW3_9_A05_A022 5', mRNA sequence
Length = 666
Score = 54.0 bits (27), Expect = 2e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1158 aggtggttttggaaaagtgtacaagggaaggcttg 1192
|||||||||||||| ||| ||||||||||||||||
Sbjct: 137 aggtggttttggaagagtctacaagggaaggcttg 171
>gb|CO160253.1|CO160253 FLD1_19_F06.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_19_F06_A029 5', mRNA sequence
Length = 826
Score = 54.0 bits (27), Expect = 2e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1158 aggtggttttggaaaagtgtacaagggaaggcttg 1192
|||||||||||||| ||| ||||||||||||||||
Sbjct: 643 aggtggttttggaagagtctacaagggaaggcttg 677
>gb|CO363779.1|CO363779 RTK1_11_F05.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_11_F05_A029 5', mRNA sequence
Length = 821
Score = 54.0 bits (27), Expect = 2e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1158 aggtggttttggaaaagtgtacaagggaaggcttg 1192
|||||||||||||| ||| ||||||||||||||||
Sbjct: 675 aggtggttttggaagagtctacaagggaaggcttg 709
>gb|CX653244.1|CX653244 COLD1_64_G06.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_64_G06_A029 3', mRNA sequence
Length = 832
Score = 52.0 bits (26), Expect = 9e-005
Identities = 74/90 (82%)
Strand = Plus / Plus
Query: 1624 cgtggaacaattggacacattgctcccgagtacctatccactggcaagtcctctgaaaag 1683
|||||||| || || ||||||||||| || ||| |||| ||||| | ||| || || |||
Sbjct: 182 cgtggaactatgggtcacattgctcctgaatacttatcaactggaaggtcatcagagaag 241
Query: 1684 accgatgtttttggatatgggatcatgctt 1713
|| ||||| ||||||||||| || ||||||
Sbjct: 242 acagatgtgtttggatatggtattatgctt 271
>dbj|BD267251.1| Compositions isolated from plant cells and utilization of the same in
modifying plant cell signal transduction
Length = 383
Score = 52.0 bits (26), Expect = 9e-005
Identities = 74/90 (82%)
Strand = Plus / Plus
Query: 1624 cgtggaacaattggacacattgctcccgagtacctatccactggcaagtcctctgaaaag 1683
|||||||| || || ||||||||||| || ||| |||| ||||| | ||| || || |||
Sbjct: 260 cgtggaactatgggtcacattgctcctgaatacttatcaactggaaggtcatcagagaag 319
Query: 1684 accgatgtttttggatatgggatcatgctt 1713
|| ||||| ||||||||||| || ||||||
Sbjct: 320 acagatgtgtttggatatggtattatgctt 349
>gb|CO165153.1|CO165153 FLD1_52_E09.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_52_E09_A029 5', mRNA sequence
Length = 886
Score = 48.1 bits (24), Expect = 0.001
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 1634 ttggacacattgctcccgagtacctatccactggcaagtcctctgaaaagaccgatgttt 1693
|||| ||||| || || |||||||| || || ||| |||||||||| ||||||||||| |
Sbjct: 792 ttgggcacatagcacctgagtacctctcaacgggccagtcctctgagaagaccgatgtat 851
Query: 1694 ttgg 1697
||||
Sbjct: 852 ttgg 855
Score = 40.1 bits (20), Expect = 0.33
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 1258 tttcaaacagaggttgagatgattagcatggcagtgcacaggaa 1301
||||| ||||| ||||||||||| ||| |||| ||||| |||||
Sbjct: 218 tttcagacagaagttgagatgatcagcctggctgtgcataggaa 261
>gb|CO362134.1|CO362134 RTK1_1_B05.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_1_B05_A029 5', mRNA sequence
Length = 675
Score = 48.1 bits (24), Expect = 0.001
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 1634 ttggacacattgctcccgagtacctatccactggcaagtcctctgaaaagaccgatgttt 1693
|||| ||||| || || |||||||| || || ||| |||||||||| ||||||||||| |
Sbjct: 322 ttgggcacatagcacctgagtacctctcaacgggccagtcctctgagaagaccgatgtat 381
Query: 1694 ttgg 1697
||||
Sbjct: 382 ttgg 385
>gb|CO362143.1|CO362143 RTK1_1_C05.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_1_C05_A029 5', mRNA sequence
Length = 647
Score = 48.1 bits (24), Expect = 0.001
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 1634 ttggacacattgctcccgagtacctatccactggcaagtcctctgaaaagaccgatgttt 1693
|||| ||||| || || |||||||| || || ||| |||||||||| ||||||||||| |
Sbjct: 294 ttgggcacatagcacctgagtacctctcaacgggccagtcctctgagaagaccgatgtat 353
Query: 1694 ttgg 1697
||||
Sbjct: 354 ttgg 357
>gb|CX713189.1|CX713189 RTPQ1_7_C01.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_7_C01_A032 5', mRNA sequence
Length = 877
Score = 48.1 bits (24), Expect = 0.001
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 360 caatgtcttgcagagttgggattccactcttgttaatccatgtacatggtttcacgttac 419
|||||| ||||||||||||||| | |||||||| ||||| || || ||||| ||| ||||
Sbjct: 68 caatgttttgcagagttgggatcctactcttgtcaatccttgcacttggttccacattac 127
>gb|DR023990.1|DR023990 STRS1_61_C03.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_61_C03_A034 5', mRNA sequence
Length = 849
Score = 48.1 bits (24), Expect = 0.001
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 1634 ttggacacattgctcccgagtacctatccactggcaagtcctctgaaaagaccgatgttt 1693
|||| ||||| || || |||||||| || || ||| |||||||||| ||||||||||| |
Sbjct: 96 ttgggcacatagcacctgagtacctctcaacgggccagtcctctgagaagaccgatgtat 155
Query: 1694 ttgg 1697
||||
Sbjct: 156 ttgg 159
>gb|DR689742.1|DR689742 EST1079828 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACM69 3' end, mRNA sequence
Length = 708
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1505 tccatcgggatgtcaaagctgcaaatattctt 1536
||||| ||||||||||| ||||||||||||||
Sbjct: 510 tccatagggatgtcaaacctgcaaatattctt 541
>gb|DT635371.1|DT635371 EST1150302 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGG12 3' end, mRNA sequence
Length = 613
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1505 tccatcgggatgtcaaagctgcaaatattctt 1536
||||| ||||||||||| ||||||||||||||
Sbjct: 518 tccatagggatgtcaaacctgcaaatattctt 549
>dbj|BD266928.1| Compositions isolated from plant cells and utilization of the same in
modifying plant cell signal transduction
Length = 2432
Score = 48.1 bits (24), Expect = 0.001
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 1253 ttcagtttcaaacagaggttgagatgattagcatggcagtgcacaggaacct 1304
|||| |||||||||||||| || ||||| ||| |||| ||||| ||||||||
Sbjct: 1227 ttcaatttcaaacagaggtggaaatgatcagcttggctgtgcataggaacct 1278
>dbj|BD267272.1| Compositions isolated from plant cells and utilization of the same in
modifying plant cell signal transduction
Length = 758
Score = 48.1 bits (24), Expect = 0.001
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 1634 ttggacacattgctcccgagtacctatccactggcaagtcctctgaaaagaccgatgttt 1693
|||| ||||| || || |||||||| || || ||| |||||||||| ||||||||||| |
Sbjct: 381 ttgggcacatagcacctgagtacctctcaacgggccagtcctctgagaagaccgatgtat 440
Query: 1694 ttgg 1697
||||
Sbjct: 441 ttgg 444
Score = 40.1 bits (20), Expect = 0.33
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 1258 tttcaaacagaggttgagatgattagcatggcagtgcacaggaa 1301
||||| ||||| ||||||||||| ||| |||| ||||| |||||
Sbjct: 5 tttcagacagaagttgagatgatcagcctggctgtgcataggaa 48
>gb|AW011134.1|AW011134 ST17B03 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST17B03, mRNA sequence
Length = 599
Score = 46.1 bits (23), Expect = 0.005
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 360 caatgtcttgcagagttgggattccactcttgttaatcc 398
|||||| ||||||||||||||| | |||||||| |||||
Sbjct: 166 caatgttttgcagagttgggatcctactcttgtcaatcc 204
>gb|AW755068.1|AW755068 PC10D11 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC10D11, mRNA sequence
Length = 239
Score = 46.1 bits (23), Expect = 0.005
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 360 caatgtcttgcagagttgggattccactcttgttaatcc 398
|||||| ||||||||||||||| | |||||||| |||||
Sbjct: 68 caatgttttgcagagttgggatcctactcttgtcaatcc 106
>gb|AW981611.1|AW981611 PC14F06 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC14F06, mRNA sequence
Length = 595
Score = 46.1 bits (23), Expect = 0.005
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 360 caatgtcttgcagagttgggattccactcttgttaatcc 398
|||||| ||||||||||||||| | |||||||| |||||
Sbjct: 250 caatgttttgcagagttgggatcctactcttgtcaatcc 288
>gb|BG275597.1|BG275597 NXSI_143_G06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_143_G06 5' similar to Arabidopsis thaliana
sequence At5g21090 leucine-rich repeat protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 491
Score = 46.1 bits (23), Expect = 0.005
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 360 caatgtcttgcagagttgggattccactcttgttaatcc 398
|||||| ||||||||||||||| | |||||||| |||||
Sbjct: 204 caatgttttgcagagttgggatcctactcttgtcaatcc 242
>gb|BG317674.1|BG317674 NXPV_004_E01_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_004_E01 5' similar to Arabidopsis
thaliana sequence At3g43740 leucine-rich repeat protein
LRP -like see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 333
Score = 46.1 bits (23), Expect = 0.005
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 360 caatgtcttgcagagttgggattccactcttgttaatcc 398
|||||| ||||||||||||||| | |||||||| |||||
Sbjct: 232 caatgttttgcagagttgggatcctactcttgtcaatcc 270
>gb|BG317994.1|BG317994 NXPV_008_C03_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_008_C03 5' similar to Arabidopsis
thaliana sequence At5g21090 leucine-rich repeat protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 566
Score = 46.1 bits (23), Expect = 0.005
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 360 caatgtcttgcagagttgggattccactcttgttaatcc 398
|||||| ||||||||||||||| | |||||||| |||||
Sbjct: 232 caatgttttgcagagttgggatcctactcttgtcaatcc 270
>gb|BI077116.1|BI077116 NXPV_087_G11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_087_G11 5' similar to Arabidopsis
thaliana sequence At5g21090 leucine-rich repeat protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 403
Score = 46.1 bits (23), Expect = 0.005
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 360 caatgtcttgcagagttgggattccactcttgttaatcc 398
|||||| ||||||||||||||| | |||||||| |||||
Sbjct: 232 caatgttttgcagagttgggatcctactcttgtcaatcc 270
>gb|BI643875.1|BI643875 NXPV_126_C10_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_126_C10 5' similar to Arabidopsis
thaliana sequence At5g21090 leucine-rich repeat protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 417
Score = 46.1 bits (23), Expect = 0.005
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 360 caatgtcttgcagagttgggattccactcttgttaatcc 398
|||||| ||||||||||||||| | |||||||| |||||
Sbjct: 63 caatgttttgcagagttgggatcctactcttgtcaatcc 101
>gb|BM428106.1|BM428106 NXRV_008_H01_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_008_H01 5' similar to Arabidopsis thaliana
sequence At5g10290 protein serine/threonine kinase-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 287
Score = 46.1 bits (23), Expect = 0.005
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 1480 catgatcactgcgatcctaagatcatccatcgggatgtcaaagctgc 1526
||||| |||||| |||| || ||||| ||||||||||| ||||||||
Sbjct: 25 catgagcactgcaatcccaaaatcattcatcgggatgtgaaagctgc 71
>gb|BQ634741.1|BQ634741 NXRV072_F12_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV072_F12 5' similar to Arabidopsis thaliana
sequence At5g10290 protein serine/threonine kinase-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 298
Score = 46.1 bits (23), Expect = 0.005
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 1480 catgatcactgcgatcctaagatcatccatcgggatgtcaaagctgc 1526
||||| |||||| |||| || ||||| ||||||||||| ||||||||
Sbjct: 25 catgagcactgcaatcccaaaatcattcatcgggatgtgaaagctgc 71
>gb|BQ695540.1|BQ695540 NXPV_025_G04_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_025_G04 5' similar to Arabidopsis
thaliana sequence At5g21090 leucine-rich repeat protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 672
Score = 46.1 bits (23), Expect = 0.005
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 360 caatgtcttgcagagttgggattccactcttgttaatcc 398
|||||| ||||||||||||||| | |||||||| |||||
Sbjct: 377 caatgttttgcagagttgggatcctactcttgtcaatcc 415
>gb|BQ696803.1|BQ696803 NXPV_045_D08_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_045_D08 5' similar to Arabidopsis
thaliana sequence At5g21090 leucine-rich repeat protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 569
Score = 46.1 bits (23), Expect = 0.005
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 360 caatgtcttgcagagttgggattccactcttgttaatcc 398
|||||| ||||||||||||||| | |||||||| |||||
Sbjct: 232 caatgttttgcagagttgggatcctactcttgtcaatcc 270
>gb|CF389137.1|CF389137 RTDR2_13_C10.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_13_C10_A021 5', mRNA
sequence
Length = 661
Score = 46.1 bits (23), Expect = 0.005
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 360 caatgtcttgcagagttgggattccactcttgttaatcc 398
|||||| ||||||||||||||| | |||||||| |||||
Sbjct: 173 caatgttttgcagagttgggatcctactcttgtcaatcc 211
>gb|CF393965.1|CF393965 RTDS2_2_F01.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_2_F01_A021 5', mRNA sequence
Length = 702
Score = 46.1 bits (23), Expect = 0.005
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 360 caatgtcttgcagagttgggattccactcttgttaatcc 398
|||||| ||||||||||||||| | |||||||| |||||
Sbjct: 215 caatgttttgcagagttgggatcctactcttgtcaatcc 253
>gb|CF476467.1|CF476467 RTWW3_1_E07.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_1_E07_A022 5', mRNA sequence
Length = 606
Score = 46.1 bits (23), Expect = 0.005
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 360 caatgtcttgcagagttgggattccactcttgttaatcc 398
|||||| ||||||||||||||| | |||||||| |||||
Sbjct: 176 caatgttttgcagagttgggatcctactcttgtcaatcc 214
>gb|BX676964.1|BX676964 BX676964 RN Pinus pinaster cDNA clone RN15A10, mRNA sequence
Length = 480
Score = 46.1 bits (23), Expect = 0.005
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 360 caatgtcttgcagagttgggattccactcttgttaatcc 398
|||||| ||||||||||||||| | |||||||| |||||
Sbjct: 218 caatgttttgcagagttgggatcctactcttgtcaatcc 256
>gb|BX681022.1|BX681022 BX681022 RS Pinus pinaster cDNA clone RS52B02, mRNA sequence
Length = 652
Score = 46.1 bits (23), Expect = 0.005
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 360 caatgtcttgcagagttgggattccactcttgttaatcc 398
|||||| ||||||||||||||| | |||||||| |||||
Sbjct: 205 caatgttttgcagagttgggatcctactcttgtcaatcc 243
>gb|BX681862.1|BX681862 BX681862 RS Pinus pinaster cDNA clone RS65H08, mRNA sequence
Length = 537
Score = 46.1 bits (23), Expect = 0.005
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 360 caatgtcttgcagagttgggattccactcttgttaatcc 398
|||||| ||||||||||||||| | |||||||| |||||
Sbjct: 169 caatgttttgcagagttgggatcctactcttgtcaatcc 207
>gb|CR392502.1|CR392502 CR392502 RN Pinus pinaster cDNA clone RN33D01, mRNA sequence
Length = 454
Score = 46.1 bits (23), Expect = 0.005
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 360 caatgtcttgcagagttgggattccactcttgttaatcc 398
|||||| ||||||||||||||| | |||||||| |||||
Sbjct: 225 caatgttttgcagagttgggatcctactcttgtcaatcc 263
>gb|CO162164.1|CO162164 FLD1_33_C06.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_33_C06_A029 5', mRNA sequence
Length = 799
Score = 46.1 bits (23), Expect = 0.005
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 360 caatgtcttgcagagttgggattccactcttgttaatcc 398
|||||| ||||||||||||||| | |||||||| |||||
Sbjct: 227 caatgttttgcagagttgggatcctactcttgtcaatcc 265
>gb|CO162471.1|CO162471 FLD1_35_B05.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_35_B05_A029 5', mRNA sequence
Length = 796
Score = 46.1 bits (23), Expect = 0.005
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 360 caatgtcttgcagagttgggattccactcttgttaatcc 398
|||||| ||||||||||||||| | |||||||| |||||
Sbjct: 229 caatgttttgcagagttgggatcctactcttgtcaatcc 267
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 225,007
Number of Sequences: 355925
Number of extensions: 225007
Number of successful extensions: 70106
Number of sequences better than 0.5: 120
Number of HSP's better than 0.5 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69917
Number of HSP's gapped (non-prelim): 182
length of query: 1916
length of database: 217,277,237
effective HSP length: 20
effective length of query: 1896
effective length of database: 210,158,737
effective search space: 398460965352
effective search space used: 398460965352
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)