BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4548790.2.1
(1044 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX251144.1|BX251144 BX251144 Pinus pinaster differenciat... 84 1e-014
gb|BX251561.1|BX251561 BX251561 Pinus pinaster differenciat... 84 1e-014
gb|BX251613.1|BX251613 BX251613 Pinus pinaster differenciat... 84 1e-014
gb|BX253271.1|BX253271 BX253271 Pinus pinaster differenciat... 84 1e-014
gb|BX254474.1|BX254474 BX254474 Pinus pinaster differenciat... 84 1e-014
gb|BX682844.1|BX682844 BX682844 Pinus pinaster differenciat... 84 1e-014
gb|CR393417.1|CR393417 CR393417 RN Pinus pinaster cDNA clon... 84 1e-014
gb|CR393207.1|CR393207 CR393207 RN Pinus pinaster cDNA clon... 82 5e-014
gb|AW011524.1|AW011524 ST21H02 Pine TriplEx shoot tip libra... 76 3e-012
gb|BE762031.1|BE762031 NXCI_076_B10_F NXCI (Nsf Xylem Compr... 76 3e-012
gb|CF386013.1|CF386013 RTDR1_7_F11.g1_A015 Loblolly pine ro... 76 3e-012
gb|CF391890.1|CF391890 RTDR3_10_G01.g1_A022 Loblolly pine r... 76 3e-012
gb|CF479851.1|CF479851 RTWW3_12_D07.g1_A022 Well-watered lo... 76 3e-012
gb|CF668487.1|CF668487 RTCNT1_36_F12.g1_A029 Root control P... 76 3e-012
gb|CO200976.1|CO200976 RTCNT2_2_G03.g1_A029 Root control 2 ... 76 3e-012
gb|CO362158.1|CO362158 RTK1_1_E05.g1_A029 Roots minus potas... 76 3e-012
gb|CO362167.1|CO362167 RTK1_1_F05.g1_A029 Roots minus potas... 76 3e-012
gb|DR015281.1|DR015281 STRS1_2_C05.g1_A034 Shoot tip pitch ... 76 3e-012
gb|DR022663.1|DR022663 STRS1_52_D06.g1_A034 Shoot tip pitch... 76 3e-012
gb|DR023285.1|DR023285 STRS1_56_D02.g1_A034 Shoot tip pitch... 76 3e-012
gb|DR024833.1|DR024833 STRS1_67_F03.g1_A034 Shoot tip pitch... 76 3e-012
gb|DR051531.1|DR051531 RTBOR1_30_E09.g1_A029 Roots plus add... 76 3e-012
gb|DR070152.1|DR070152 RTDK1_11_D01.g1_A029 Roots, dark Pin... 76 3e-012
gb|DR080162.1|DR080162 RTFEPL1_20_E11.g1_A029 Roots plus ad... 76 3e-012
gb|DR093057.1|DR093057 STRR1_5_F06.g1_A033 Stem Response Re... 76 3e-012
gb|DR096273.1|DR096273 STRR1_26_H05.g1_A033 Stem Response R... 76 3e-012
gb|DR096352.1|DR096352 STRR1_27_A07.g1_A033 Stem Response R... 76 3e-012
gb|DR099166.1|DR099166 STRR1_53_C12.g1_A033 Stem Response R... 76 3e-012
gb|DR100480.1|DR100480 STRR1_64_A12.g1_A033 Stem Response R... 76 3e-012
gb|DR120128.1|DR120128 RTMG1_27_E05.g2_A029 Roots minus mag... 76 3e-012
gb|DR746394.1|DR746394 RTCU1_36_E04.g1_A029 Roots plus adde... 76 3e-012
gb|BF778581.1|BF778581 NXSI_088_D02_F NXSI (Nsf Xylem Side ... 68 8e-010
gb|CX649475.1|CX649475 COLD1_35_B04.g1_A029 Root cold Pinus... 68 8e-010
gb|CX652556.1|CX652556 COLD1_59_H02.g1_A029 Root cold Pinus... 68 8e-010
gb|CX713463.1|CX713463 RTPQ1_9_C04.g1_A032 Roots treated wi... 68 8e-010
gb|DR011619.1|DR011619 HEAT1_6_G09.g1_A029 Root at 37 C for... 68 8e-010
gb|DR055148.1|DR055148 RTCA1_21_G09.g2_A029 Roots minus cal... 68 8e-010
gb|DR056610.1|DR056610 RTCA1_31_A02.g1_A029 Roots minus cal... 68 8e-010
gb|DR072178.1|DR072178 RTDK1_24_C09.g1_A029 Roots, dark Pin... 68 8e-010
gb|DR089298.1|DR089298 RTAL1_7_G03.g1_A029 Roots plus added... 68 8e-010
gb|DR090373.1|DR090373 RTAL1_14_D02.g1_A029 Roots plus adde... 68 8e-010
gb|DR090533.1|DR090533 RTAL1_15_E12.g1_A029 Roots plus adde... 68 8e-010
gb|DR092307.1|DR092307 RTAL1_28_G05.b1_A029 Roots plus adde... 68 8e-010
gb|DR098553.1|DR098553 STRR1_46_F12.b1_A033 Stem Response R... 68 8e-010
gb|DR100599.1|DR100599 STRR1_65_E02.g1_A033 Stem Response R... 68 8e-010
gb|DR113034.1|DR113034 RTS1_32_B12.g1_A029 Roots minus sulf... 68 8e-010
gb|DR163422.1|DR163422 RTFE1_42_G07.g1_A029 Roots minus iro... 68 8e-010
gb|DT636492.1|DT636492 EST1151423 Normalized pine embryo li... 68 8e-010
gb|DR070179.1|DR070179 RTDK1_11_F07.g1_A029 Roots, dark Pin... 66 3e-009
gb|AA556861.1|AA556861 703 Loblolly pine C Pinus taeda cDNA... 62 5e-008
gb|CO166169.1|CO166169 FLD1_59_G05.g1_A029 Root flooded Pin... 60 2e-007
gb|CX646780.1|CX646780 COLD1_11_B06.g1_A029 Root cold Pinus... 60 2e-007
gb|U64891.1|PTU64891 Pinus taeda expansin mRNA, partial cds 58 8e-007
gb|U64893.1|PTU64893 Pinus taeda expansin mRNA, partial cds 58 8e-007
gb|U64892.1|PTU64892 Pinus taeda expansin mRNA, partial cds 58 8e-007
gb|AA556812.1|AA556812 654 Loblolly pine C Pinus taeda cDNA... 52 5e-005
gb|BF049828.1|BF049828 NXCI_111_D09_F NXCI (Nsf Xylem Compr... 52 5e-005
gb|BF609532.1|BF609532 NXSI_043_G01_F NXSI (Nsf Xylem Side ... 52 5e-005
gb|CF668454.1|CF668454 RTCNT1_36_C09.g1_A029 Root control P... 52 5e-005
gb|DR102236.1|DR102236 STRR1_79_C04.g1_A033 Stem Response R... 52 5e-005
gb|AW290718.1|AW290718 NXNV046B02F Nsf Xylem Normal wood Ve... 50 2e-004
gb|AW985386.1|AW985386 NXNV_134_G08_F Nsf Xylem Normal wood... 50 2e-004
gb|BE049743.1|BE049743 NXNV_143_C08_F Nsf Xylem Normal wood... 50 2e-004
gb|BM367687.1|BM367687 NXLV_053_B09_F NXLV (Nsf Xylem Late ... 50 2e-004
gb|BM902805.1|BM902805 NXLV_075_E10_F NXLV (Nsf Xylem Late ... 50 2e-004
gb|CD020758.1|CD020758 NXNV_085_G07_F Nsf Xylem Normal wood... 50 2e-004
gb|CD027376.1|CD027376 NXNV046B02 Nsf Xylem Normal wood Ver... 50 2e-004
gb|CF400025.1|CF400025 RTWW1_2_C11.g1_A015 Well-watered lob... 50 2e-004
gb|CF663902.1|CF663902 RTCNT1_5_H12.g1_A029 Root control Pi... 50 2e-004
gb|CX650703.1|CX650703 COLD1_47_B12.g1_A029 Root cold Pinus... 50 2e-004
gb|U64890.1|PTU64890 Pinus taeda expansin mRNA, partial cds 50 2e-004
gb|AF085330.1|AF085330 Pinus taeda expansin mRNA, complete cds 50 2e-004
gb|CF386668.1|CF386668 RTDR1_16_C08.b1_A015 Loblolly pine r... 48 7e-004
gb|CF386766.1|CF386766 RTDR1_16_C08.g1_A015 Loblolly pine r... 48 7e-004
gb|CF400511.1|CF400511 RTWW1_6_B06.b1_A015 Well-watered lob... 48 7e-004
gb|CF400637.1|CF400637 RTWW1_6_B06.g1_A015 Well-watered lob... 48 7e-004
gb|CO197560.1|CO197560 GEO1_7_H02.b1_A029 Root gravitropism... 48 7e-004
gb|DR097316.1|DR097316 STRR1_33_H05.g3_A033 Stem Response R... 48 7e-004
gb|CF401946.1|CF401946 RTWW1_16_F09.b1_A015 Well-watered lo... 46 0.003
gb|DR687528.1|DR687528 EST1077610 Normalized pine embryo li... 46 0.003
gb|DT633920.1|DT633920 EST1148851 Normalized pine embryo li... 46 0.003
gb|BG275593.1|BG275593 NXSI_143_F09_F NXSI (Nsf Xylem Side ... 44 0.011
gb|CF666895.1|CF666895 RTCNT1_26_G11.g1_A029 Root control P... 44 0.011
gb|CO171240.1|CO171240 NDL1_20_C09.b1_A029 Needles control ... 44 0.011
gb|CO171305.1|CO171305 NDL1_20_C09.g1_A029 Needles control ... 44 0.011
gb|DR111040.1|DR111040 RTS1_14_G09.g1_A029 Roots minus sulf... 44 0.011
gb|DR168662.1|DR168662 RTPHOS1_27_B09.b1_A029 Roots minus p... 44 0.011
gb|AW290022.1|AW290022 NXNV009F01F Nsf Xylem Normal wood Ve... 42 0.045
gb|BQ107011.1|BQ107011 NXLV085_E06_F NXLV (Nsf Xylem Late w... 40 0.18
gb|CF396870.1|CF396870 RTDS2_24_A10.g1_A021 Drought-stresse... 40 0.18
gb|CF402042.1|CF402042 RTWW1_16_F09.g1_A015 Well-watered lo... 40 0.18
gb|CF474408.1|CF474408 RTWW2_20_A09.g1_A021 Well-watered lo... 40 0.18
gb|CX649395.1|CX649395 COLD1_35_B04.b1_A029 Root cold Pinus... 40 0.18
gb|DR011201.1|DR011201 HEAT1_4_E06.b1_A029 Root at 37 C for... 40 0.18
gb|DR047687.1|DR047687 RTBOR1_2_F07.g1_A029 Roots plus adde... 40 0.18
gb|DR055360.1|DR055360 RTCA1_23_E11.b1_A029 Roots minus cal... 40 0.18
gb|DR055518.1|DR055518 RTCA1_24_E10.b1_A029 Roots minus cal... 40 0.18
gb|DR055601.1|DR055601 RTCA1_24_E10.g2_A029 Roots minus cal... 40 0.18
gb|DR056635.1|DR056635 RTCA1_31_C07.g1_A029 Roots minus cal... 40 0.18
gb|DR070635.1|DR070635 RTDK1_14_D09.g1_A029 Roots, dark Pin... 40 0.18
gb|DR089220.1|DR089220 RTAL1_7_G03.b1_A029 Roots plus added... 40 0.18
gb|DR090297.1|DR090297 RTAL1_14_D02.b1_A029 Roots plus adde... 40 0.18
gb|DR090465.1|DR090465 RTAL1_15_E12.b1_A029 Roots plus adde... 40 0.18
gb|DR100574.1|DR100574 STRR1_65_E02.b1_A033 Stem Response R... 40 0.18
gb|DR112973.1|DR112973 RTS1_32_B12.b1_A029 Roots minus sulf... 40 0.18
gb|DR120161.1|DR120161 RTMG1_27_H07.g2_A029 Roots minus mag... 40 0.18
gb|DR180723.1|DR180723 RTMNUT1_34_A06.g1_A029 Roots minus m... 40 0.18
gb|DR692432.1|DR692432 EST1082520 Normalized pine embryo li... 40 0.18
>gb|BX251144.1|BX251144 BX251144 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP045H02 similar to POLLEN ALLERGEN, mRNA
sequence
Length = 662
Score = 83.8 bits (42), Expect = 1e-014
Identities = 117/142 (82%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| ||||| || |||| | |||||||
Sbjct: 409 tggtcacggccaccaatttctgccctcccaactatgcgctgcctaacgacaatggcggct 468
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 469 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 528
Query: 363 agtaccgcgccggcatcgtgcc 384
||||||| ||||| || |||||
Sbjct: 529 agtaccgtgccggaattgtgcc 550
>gb|BX251561.1|BX251561 BX251561 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP051C06 similar to POLLEN ALLERGEN, mRNA
sequence
Length = 584
Score = 83.8 bits (42), Expect = 1e-014
Identities = 117/142 (82%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| ||||| || |||| | |||||||
Sbjct: 409 tggtcacggccaccaatttctgccctcccaactatgcgctgcctaacgacaatggcggct 468
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 469 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 528
Query: 363 agtaccgcgccggcatcgtgcc 384
||||||| ||||| || |||||
Sbjct: 529 agtaccgtgccggaattgtgcc 550
>gb|BX251613.1|BX251613 BX251613 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP053A05 similar to POLLEN ALLERGEN, mRNA
sequence
Length = 632
Score = 83.8 bits (42), Expect = 1e-014
Identities = 117/142 (82%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| ||||| || |||| | |||||||
Sbjct: 385 tggtcacggccaccaatttctgccctcccaactatgcgctgcctaacgacaatggcggct 444
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 445 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 504
Query: 363 agtaccgcgccggcatcgtgcc 384
||||||| ||||| || |||||
Sbjct: 505 agtaccgtgccggaattgtgcc 526
>gb|BX253271.1|BX253271 BX253271 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP080E08 similar to POLLEN ALLERGEN, mRNA
sequence
Length = 673
Score = 83.8 bits (42), Expect = 1e-014
Identities = 117/142 (82%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| ||||| || |||| | |||||||
Sbjct: 414 tggtcacggccaccaatttctgccctcccaactatgcgctgcctaacgacaatggcggct 473
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 474 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 533
Query: 363 agtaccgcgccggcatcgtgcc 384
||||||| ||||| || |||||
Sbjct: 534 agtaccgtgccggaattgtgcc 555
>gb|BX254474.1|BX254474 BX254474 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP099A09 similar to POLLEN ALLERGEN, mRNA
sequence
Length = 697
Score = 83.8 bits (42), Expect = 1e-014
Identities = 117/142 (82%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| ||||| || |||| | |||||||
Sbjct: 99 tggtcacggccaccaatttctgccctcccaactatgcgctgcctaacgacaatggcggct 158
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 159 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 218
Query: 363 agtaccgcgccggcatcgtgcc 384
||||||| ||||| || |||||
Sbjct: 219 agtaccgtgccggaattgtgcc 240
Score = 42.1 bits (21), Expect = 0.045
Identities = 113/141 (80%), Gaps = 2/141 (1%)
Strand = Plus / Plus
Query: 431 ttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtggccggcgcg 490
||||| ||||| |||||| |||||||||||||| || ||||| || ||||| || ||
Sbjct: 287 ttcaccatcaatggcttcaaatacttcaacctggttctcatcacaaatgtggctggagca 346
Query: 491 ggggacgtggtgcgcgcgagcgtcaa-ggcggccagcaccgggtggctgcccatgtccag 549
|||||| ||||| | | |||||| || || ||||| ||||||||| | || |||||||
Sbjct: 347 ggggacttggtgagagtgagcgtgaagggtagccag-accgggtggattccattgtccag 405
Query: 550 gaactggggccagaactggca 570
||||||||||| || |||||
Sbjct: 406 aaactggggccaaaattggca 426
>gb|BX682844.1|BX682844 BX682844 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 122F05 similar to Alpha-expansin, mRNA
sequence
Length = 658
Score = 83.8 bits (42), Expect = 1e-014
Identities = 117/142 (82%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| ||||| || |||| | |||||||
Sbjct: 411 tggtcacggccaccaatttctgccctcccaactatgcgctgcctaacgacaatggcggct 470
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 471 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 530
Query: 363 agtaccgcgccggcatcgtgcc 384
||||||| ||||| || |||||
Sbjct: 531 agtaccgtgccggaattgtgcc 552
>gb|CR393417.1|CR393417 CR393417 RN Pinus pinaster cDNA clone RN59H01, mRNA sequence
Length = 500
Score = 83.8 bits (42), Expect = 1e-014
Identities = 117/142 (82%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| ||||| || |||| | |||||||
Sbjct: 116 tggtcacggccaccaatttctgccctcccaactatgcgctgcctaacgacaatggcggct 175
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 176 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 235
Query: 363 agtaccgcgccggcatcgtgcc 384
||||||| ||||| || |||||
Sbjct: 236 agtaccgtgccggaattgtgcc 257
Score = 40.1 bits (20), Expect = 0.18
Identities = 59/72 (81%)
Strand = Plus / Plus
Query: 431 ttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtggccggcgcg 490
||||| ||||| |||||| |||||||||||||| || ||||| || ||||| || ||
Sbjct: 304 ttcaccatcaatggcttcaaatacttcaacctggttctcatcacaaatgtggctggagca 363
Query: 491 ggggacgtggtg 502
|||||| |||||
Sbjct: 364 ggggacttggtg 375
>gb|CR393207.1|CR393207 CR393207 RN Pinus pinaster cDNA clone RN53H09, mRNA sequence
Length = 512
Score = 81.8 bits (41), Expect = 5e-014
Identities = 110/133 (82%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| ||||| || |||| | |||||||
Sbjct: 380 tggtcacggccaccaatttctgccctcccaactatgcgctgcctaacgacaatggcggct 439
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 440 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 499
Query: 363 agtaccgcgccgg 375
||||||| |||||
Sbjct: 500 agtaccgtgccgg 512
>gb|AW011524.1|AW011524 ST21H02 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST21H02, mRNA sequence
Length = 601
Score = 75.8 bits (38), Expect = 3e-012
Identities = 116/142 (81%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| || || || |||| | || ||||
Sbjct: 172 tggtcacggccaccaatttctgccctcccaactatgctctgcctaacgacaatggtggct 231
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || ||||| ||| ||||||| || |||||| | || ||||
Sbjct: 232 ggtgcaatcctcctcgcccccatttcgatctctccatgccaattttcctcaagatggccg 291
Query: 363 agtaccgcgccggcatcgtgcc 384
||||||| ||||| || |||||
Sbjct: 292 agtaccgtgccggaattgtgcc 313
>gb|BE762031.1|BE762031 NXCI_076_B10_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_076_B10 5' similar to Arabidopsis
thaliana sequence At2g28950 putative expansin see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 382
Score = 75.8 bits (38), Expect = 3e-012
Identities = 116/142 (81%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| || || || |||| | |||||||
Sbjct: 141 tggtcacggccaccaatttctgccctcccaactatgctctgcctaacgacaatggcggct 200
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 201 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 260
Query: 363 agtaccgcgccggcatcgtgcc 384
||||||| ||||| || |||||
Sbjct: 261 agtaccgtgccggaattgtgcc 282
>gb|CF386013.1|CF386013 RTDR1_7_F11.g1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_7_F11_A015 5', mRNA
sequence
Length = 773
Score = 75.8 bits (38), Expect = 3e-012
Identities = 116/142 (81%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| || || || |||| | |||||||
Sbjct: 389 tggtcacggccaccaatttctgccctcccaactatgctctgcctaacgacaatggcggct 448
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 449 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 508
Query: 363 agtaccgcgccggcatcgtgcc 384
||||||| ||||| || |||||
Sbjct: 509 agtaccgtgccggaattgtgcc 530
>gb|CF391890.1|CF391890 RTDR3_10_G01.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_10_G01_A022 5', mRNA
sequence
Length = 746
Score = 75.8 bits (38), Expect = 3e-012
Identities = 116/142 (81%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| || || || |||| | |||||||
Sbjct: 395 tggtcacggccaccaatttctgccctcccaactatgctctgcctaacgacaatggcggct 454
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 455 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 514
Query: 363 agtaccgcgccggcatcgtgcc 384
||||||| ||||| || |||||
Sbjct: 515 agtaccgtgccggaattgtgcc 536
>gb|CF479851.1|CF479851 RTWW3_12_D07.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_12_D07_A022 5', mRNA sequence
Length = 630
Score = 75.8 bits (38), Expect = 3e-012
Identities = 116/142 (81%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| || || || |||| | |||||||
Sbjct: 353 tggtcacggccaccaatttctgccctcccaactatgctctgcctaacgacaatggcggct 412
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 413 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 472
Query: 363 agtaccgcgccggcatcgtgcc 384
||||||| ||||| || |||||
Sbjct: 473 agtaccgtgccggaattgtgcc 494
>gb|CF668487.1|CF668487 RTCNT1_36_F12.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_36_F12_A029 5', mRNA sequence
Length = 755
Score = 75.8 bits (38), Expect = 3e-012
Identities = 116/142 (81%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| || || || |||| | |||||||
Sbjct: 371 tggtcacggccaccaatttctgccctcccaactatgctctgcctaacgacaatggcggct 430
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 431 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 490
Query: 363 agtaccgcgccggcatcgtgcc 384
||||||| ||||| || |||||
Sbjct: 491 agtaccgtgccggaattgtgcc 512
>gb|CO200976.1|CO200976 RTCNT2_2_G03.g1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_2_G03_A029 5', mRNA sequence
Length = 676
Score = 75.8 bits (38), Expect = 3e-012
Identities = 116/142 (81%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| || || || |||| | |||||||
Sbjct: 99 tggtcacggccaccaatttctgccctcccaactatgctctgcctaacgacaatggcggct 158
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 159 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 218
Query: 363 agtaccgcgccggcatcgtgcc 384
||||||| ||||| || |||||
Sbjct: 219 agtaccgtgccggaattgtgcc 240
>gb|CO362158.1|CO362158 RTK1_1_E05.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_1_E05_A029 5', mRNA sequence
Length = 764
Score = 75.8 bits (38), Expect = 3e-012
Identities = 116/142 (81%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| || || || |||| | |||||||
Sbjct: 149 tggtcacggccaccaatttctgccctcccaactatgctctgcctaacgacaatggcggct 208
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 209 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 268
Query: 363 agtaccgcgccggcatcgtgcc 384
||||||| ||||| || |||||
Sbjct: 269 agtaccgtgccggaattgtgcc 290
>gb|CO362167.1|CO362167 RTK1_1_F05.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_1_F05_A029 5', mRNA sequence
Length = 584
Score = 75.8 bits (38), Expect = 3e-012
Identities = 116/142 (81%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| || || || |||| | |||||||
Sbjct: 141 tggtcacggccaccaatttctgccctcccaactatgctctgcctaacgacaatggcggct 200
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 201 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 260
Query: 363 agtaccgcgccggcatcgtgcc 384
||||||| ||||| || |||||
Sbjct: 261 agtaccgtgccggaattgtgcc 282
>gb|DR015281.1|DR015281 STRS1_2_C05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_2_C05_A034 5', mRNA sequence
Length = 848
Score = 75.8 bits (38), Expect = 3e-012
Identities = 116/142 (81%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| || || || |||| | |||||||
Sbjct: 369 tggtcacggccaccaatttctgccctcccaactatgctctgcctaacgacaatggcggct 428
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 429 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 488
Query: 363 agtaccgcgccggcatcgtgcc 384
||||||| ||||| || |||||
Sbjct: 489 agtaccgtgccggaattgtgcc 510
>gb|DR022663.1|DR022663 STRS1_52_D06.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_52_D06_A034 5', mRNA sequence
Length = 583
Score = 75.8 bits (38), Expect = 3e-012
Identities = 116/142 (81%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| || || || |||| | |||||||
Sbjct: 305 tggtcacggccaccaatttctgccctcccaactatgctctgcctaacgacaatggcggct 364
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 365 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 424
Query: 363 agtaccgcgccggcatcgtgcc 384
||||||| ||||| || |||||
Sbjct: 425 agtaccgtgccggaattgtgcc 446
>gb|DR023285.1|DR023285 STRS1_56_D02.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_56_D02_A034 5', mRNA sequence
Length = 844
Score = 75.8 bits (38), Expect = 3e-012
Identities = 116/142 (81%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| || || || |||| | |||||||
Sbjct: 29 tggtcacggccaccaatttctgccctcccaactatgctctgcctaacgacaatggcggct 88
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 89 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 148
Query: 363 agtaccgcgccggcatcgtgcc 384
||||||| ||||| || |||||
Sbjct: 149 agtaccgtgccggaattgtgcc 170
>gb|DR024833.1|DR024833 STRS1_67_F03.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_67_F03_A034 5', mRNA sequence
Length = 778
Score = 75.8 bits (38), Expect = 3e-012
Identities = 116/142 (81%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| || || || |||| | |||||||
Sbjct: 395 tggtcacggccaccaatttctgccctcccaactatgctctgcctaacgacaatggcggct 454
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 455 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 514
Query: 363 agtaccgcgccggcatcgtgcc 384
||||||| ||||| || |||||
Sbjct: 515 agtaccgtgccggaattgtgcc 536
>gb|DR051531.1|DR051531 RTBOR1_30_E09.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_30_E09_A029 5', mRNA sequence
Length = 798
Score = 75.8 bits (38), Expect = 3e-012
Identities = 116/142 (81%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| || || || |||| | |||||||
Sbjct: 396 tggtcacggccaccaatttctgccctcccaactatgctctgcctaacgacaatggcggct 455
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 456 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 515
Query: 363 agtaccgcgccggcatcgtgcc 384
||||||| ||||| || |||||
Sbjct: 516 agtaccgtgccggaattgtgcc 537
>gb|DR070152.1|DR070152 RTDK1_11_D01.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_11_D01_A029 5', mRNA sequence
Length = 748
Score = 75.8 bits (38), Expect = 3e-012
Identities = 116/142 (81%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| || || || |||| | |||||||
Sbjct: 204 tggtcacggccaccaatttctgccctcccaactatgctctgcctaacgacaatggcggct 263
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 264 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 323
Query: 363 agtaccgcgccggcatcgtgcc 384
||||||| ||||| || |||||
Sbjct: 324 agtaccgtgccggaattgtgcc 345
>gb|DR080162.1|DR080162 RTFEPL1_20_E11.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_20_E11_A029 5', mRNA sequence
Length = 740
Score = 75.8 bits (38), Expect = 3e-012
Identities = 116/142 (81%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| || || || |||| | |||||||
Sbjct: 376 tggtcacggccaccaatttctgccctcccaactatgctctgcctaacgacaatggcggct 435
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 436 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 495
Query: 363 agtaccgcgccggcatcgtgcc 384
||||||| ||||| || |||||
Sbjct: 496 agtaccgtgccggaattgtgcc 517
>gb|DR093057.1|DR093057 STRR1_5_F06.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_5_F06_A033 5', mRNA sequence
Length = 884
Score = 75.8 bits (38), Expect = 3e-012
Identities = 116/142 (81%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| || || || |||| | |||||||
Sbjct: 352 tggtcacggccaccaatttctgccctcccaactatgctctgcctaacgacaatggcggct 411
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 412 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 471
Query: 363 agtaccgcgccggcatcgtgcc 384
||||||| ||||| || |||||
Sbjct: 472 agtaccgtgccggaattgtgcc 493
>gb|DR096273.1|DR096273 STRR1_26_H05.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_26_H05_A033 5', mRNA sequence
Length = 801
Score = 75.8 bits (38), Expect = 3e-012
Identities = 116/142 (81%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| || || || |||| | |||||||
Sbjct: 367 tggtcacggccaccaatttctgccctcccaactatgctctgcctaacgacaatggcggct 426
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 427 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 486
Query: 363 agtaccgcgccggcatcgtgcc 384
||||||| ||||| || |||||
Sbjct: 487 agtaccgtgccggaattgtgcc 508
>gb|DR096352.1|DR096352 STRR1_27_A07.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_27_A07_A033 5', mRNA sequence
Length = 635
Score = 75.8 bits (38), Expect = 3e-012
Identities = 116/142 (81%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| || || || |||| | |||||||
Sbjct: 370 tggtcacggccaccaatttctgccctcccaactatgctctgcctaacgacaatggcggct 429
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 430 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 489
Query: 363 agtaccgcgccggcatcgtgcc 384
||||||| ||||| || |||||
Sbjct: 490 agtaccgtgccggaattgtgcc 511
>gb|DR099166.1|DR099166 STRR1_53_C12.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_53_C12_A033 5', mRNA sequence
Length = 823
Score = 75.8 bits (38), Expect = 3e-012
Identities = 116/142 (81%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| || || || |||| | |||||||
Sbjct: 187 tggtcacggccaccaatttctgccctcccaactatgctctgcctaacgacaatggcggct 246
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 247 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 306
Query: 363 agtaccgcgccggcatcgtgcc 384
||||||| ||||| || |||||
Sbjct: 307 agtaccgtgccggaattgtgcc 328
>gb|DR100480.1|DR100480 STRR1_64_A12.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_64_A12_A033 5', mRNA sequence
Length = 619
Score = 75.8 bits (38), Expect = 3e-012
Identities = 116/142 (81%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| || || || |||| | |||||||
Sbjct: 375 tggtcacggccaccaatttctgccctcccaactatgctctgcctaacgacaatggcggct 434
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 435 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 494
Query: 363 agtaccgcgccggcatcgtgcc 384
||||||| ||||| || |||||
Sbjct: 495 agtaccgtgccggaattgtgcc 516
>gb|DR120128.1|DR120128 RTMG1_27_E05.g2_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_27_E05_A029 5', mRNA sequence
Length = 754
Score = 75.8 bits (38), Expect = 3e-012
Identities = 116/142 (81%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| || || || |||| | |||||||
Sbjct: 403 tggtcacggccaccaatttctgccctcccaactatgctctgcctaacgacaatggcggct 462
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 463 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 522
Query: 363 agtaccgcgccggcatcgtgcc 384
||||||| ||||| || |||||
Sbjct: 523 agtaccgtgccggaattgtgcc 544
Score = 40.1 bits (20), Expect = 0.18
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 527 accgggtggctgcccatgtccaggaactggggccagaactggca 570
||||||||| | ||| ||||||| ||||||||||| || |||||
Sbjct: 687 accgggtggattcccttgtccagaaactggggccaaaattggca 730
>gb|DR746394.1|DR746394 RTCU1_36_E04.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_36_E04_A029 5', mRNA sequence
Length = 499
Score = 75.8 bits (38), Expect = 3e-012
Identities = 116/142 (81%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| || || || |||| | |||||||
Sbjct: 181 tggtcacggccaccaatttctgccctcccaactatgctctgcctaacgacaatggcggct 240
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 241 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 300
Query: 363 agtaccgcgccggcatcgtgcc 384
||||||| ||||| || |||||
Sbjct: 301 agtaccgtgccggaattgtgcc 322
>gb|BF778581.1|BF778581 NXSI_088_D02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_088_D02 5' similar to Arabidopsis thaliana
sequence At2g39700 putative expansin see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 440
Score = 67.9 bits (34), Expect = 8e-010
Identities = 115/142 (80%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| || || || |||| | || ||||
Sbjct: 136 tggtcacggccaccaatttctgccctcccaactatgctctgcctaacgacaatggtggct 195
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 196 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 255
Query: 363 agtaccgcgccggcatcgtgcc 384
||||||| ||||| || |||||
Sbjct: 256 agtaccgtgccggaattgtgcc 277
>gb|CX649475.1|CX649475 COLD1_35_B04.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_35_B04_A029 5', mRNA sequence
Length = 670
Score = 67.9 bits (34), Expect = 8e-010
Identities = 115/142 (80%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| || || || |||| | || ||||
Sbjct: 227 tggtcacggccaccaatttctgccctcccaactatgctctgcctaacgacaatggtggct 286
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 287 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 346
Query: 363 agtaccgcgccggcatcgtgcc 384
||||||| ||||| || |||||
Sbjct: 347 agtaccgtgccggaattgtgcc 368
Score = 40.1 bits (20), Expect = 0.18
Identities = 172/220 (78%), Gaps = 2/220 (0%)
Strand = Plus / Plus
Query: 431 ttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtggccggcgcg 490
||||| || ||||||||| |||||||| ||||| || ||||| || ||||| || ||
Sbjct: 415 ttcaccattaacggcttcaaatacttcaatctggttctcatcacaaatgtggctggagca 474
Query: 491 ggggacgtggtgcgcgcgagcgtcaaggcg-gccagcaccgggtggctgcccatgtccag 549
|||||| ||||| | | |||||| |||| ||||| ||||||||| | || |||||||
Sbjct: 475 ggggacttggtgagagtgagcgtgaagggtagccag-accgggtggattccattgtccag 533
Query: 550 gaactggggccagaactggcagtccaacgccatcctcgtcggccaggcgctctccttccg 609
||||||||||| || ||||| | || | || |||| ||||| ||| ||||||||| |
Sbjct: 534 aaactggggccaaaattggcaatgcagcaccgtcctggtcgggcagagcctctccttcag 593
Query: 610 cgtcaccgccagcgaccgccgcacctccacctcctggaac 649
|| || | ||| |||||| | |||||||| |||||||||
Sbjct: 594 agtaactggcagtgaccgcaggacctccacatcctggaac 633
>gb|CX652556.1|CX652556 COLD1_59_H02.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_59_H02_A029 5', mRNA sequence
Length = 699
Score = 67.9 bits (34), Expect = 8e-010
Identities = 115/142 (80%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| || || || |||| | || ||||
Sbjct: 162 tggtcacggccaccaatttctgccctcccaactatgctctgcctaacgacaatggtggct 221
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 222 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 281
Query: 363 agtaccgcgccggcatcgtgcc 384
||||||| ||||| || |||||
Sbjct: 282 agtaccgtgccggaattgtgcc 303
Score = 40.1 bits (20), Expect = 0.18
Identities = 172/220 (78%), Gaps = 2/220 (0%)
Strand = Plus / Plus
Query: 431 ttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtggccggcgcg 490
||||| || ||||||||| |||||||| ||||| || ||||| || ||||| || ||
Sbjct: 350 ttcaccattaacggcttcaaatacttcaatctggttctcatcacaaatgtggctggagca 409
Query: 491 ggggacgtggtgcgcgcgagcgtcaaggcg-gccagcaccgggtggctgcccatgtccag 549
|||||| ||||| | | |||||| |||| ||||| ||||||||| | || |||||||
Sbjct: 410 ggggacttggtgagagtgagcgtgaagggtagccag-accgggtggattccattgtccag 468
Query: 550 gaactggggccagaactggcagtccaacgccatcctcgtcggccaggcgctctccttccg 609
||||||||||| || ||||| | || | || |||| ||||| ||| ||||||||| |
Sbjct: 469 aaactggggccaaaattggcaatgcagcaccgtcctggtcgggcagagcctctccttcag 528
Query: 610 cgtcaccgccagcgaccgccgcacctccacctcctggaac 649
|| || | ||| |||||| | |||||||| |||||||||
Sbjct: 529 agtaactggcagtgaccgcaggacctccacatcctggaac 568
>gb|CX713463.1|CX713463 RTPQ1_9_C04.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_9_C04_A032 5', mRNA sequence
Length = 556
Score = 67.9 bits (34), Expect = 8e-010
Identities = 115/142 (80%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| || || || |||| | || ||||
Sbjct: 28 tggtcacggccaccaatttctgccctcccaactatgctctgcctaacgacaatggtggct 87
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 88 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 147
Query: 363 agtaccgcgccggcatcgtgcc 384
||||||| ||||| || |||||
Sbjct: 148 agtaccgtgccggaattgtgcc 169
Score = 40.1 bits (20), Expect = 0.18
Identities = 172/220 (78%), Gaps = 2/220 (0%)
Strand = Plus / Plus
Query: 431 ttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtggccggcgcg 490
||||| || ||||||||| |||||||| ||||| || ||||| || ||||| || ||
Sbjct: 216 ttcaccattaacggcttcaaatacttcaatctggttctcatcacaaatgtggctggagca 275
Query: 491 ggggacgtggtgcgcgcgagcgtcaaggcg-gccagcaccgggtggctgcccatgtccag 549
|||||| ||||| | | |||||| |||| ||||| ||||||||| | || |||||||
Sbjct: 276 ggggacttggtgagagtgagcgtgaagggtagccag-accgggtggattccattgtccag 334
Query: 550 gaactggggccagaactggcagtccaacgccatcctcgtcggccaggcgctctccttccg 609
||||||||||| || ||||| | || | || |||| ||||| ||| ||||||||| |
Sbjct: 335 aaactggggccaaaattggcaatgcagcaccgtcctggtcgggcagagcctctccttcag 394
Query: 610 cgtcaccgccagcgaccgccgcacctccacctcctggaac 649
|| || | ||| |||||| | |||||||| |||||||||
Sbjct: 395 agtaactggcagtgaccgcaggacctccacatcctggaac 434
>gb|DR011619.1|DR011619 HEAT1_6_G09.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_6_G09_A029 5', mRNA sequence
Length = 783
Score = 67.9 bits (34), Expect = 8e-010
Identities = 115/142 (80%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| || || || |||| | || ||||
Sbjct: 400 tggtcacggccaccaatttctgccctcccaactatgctctgcctaacgacaatggtggct 459
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 460 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 519
Query: 363 agtaccgcgccggcatcgtgcc 384
||||||| ||||| || |||||
Sbjct: 520 agtaccgtgccggaattgtgcc 541
>gb|DR055148.1|DR055148 RTCA1_21_G09.g2_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_21_G09_A029 5', mRNA sequence
Length = 722
Score = 67.9 bits (34), Expect = 8e-010
Identities = 115/142 (80%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| || || || |||| | || ||||
Sbjct: 301 tggtcacggccaccaatttctgccctcccaactatgctctgcctaacgacaatggtggct 360
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 361 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 420
Query: 363 agtaccgcgccggcatcgtgcc 384
||||||| ||||| || |||||
Sbjct: 421 agtaccgtgccggaattgtgcc 442
>gb|DR056610.1|DR056610 RTCA1_31_A02.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_31_A02_A029 5', mRNA sequence
Length = 590
Score = 67.9 bits (34), Expect = 8e-010
Identities = 115/142 (80%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| || || || |||| | || ||||
Sbjct: 353 tggtcacggccaccaatttctgccctcccaactatgctctgcctaacgacaatggtggct 412
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 413 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 472
Query: 363 agtaccgcgccggcatcgtgcc 384
||||||| ||||| || |||||
Sbjct: 473 agtaccgtgccggaattgtgcc 494
>gb|DR072178.1|DR072178 RTDK1_24_C09.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_24_C09_A029 5', mRNA sequence
Length = 721
Score = 67.9 bits (34), Expect = 8e-010
Identities = 115/142 (80%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| || || || |||| | || ||||
Sbjct: 84 tggtcacggccaccaatttctgccctcccaactatgctctgcctaacgacaatggtggct 143
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 144 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 203
Query: 363 agtaccgcgccggcatcgtgcc 384
||||||| ||||| || |||||
Sbjct: 204 agtaccgtgccggaattgtgcc 225
>gb|DR089298.1|DR089298 RTAL1_7_G03.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_7_G03_A029 5', mRNA sequence
Length = 659
Score = 67.9 bits (34), Expect = 8e-010
Identities = 115/142 (80%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| || || || |||| | || ||||
Sbjct: 378 tggtcacggccaccaatttctgccctcccaactatgctctgcctaacgacaatggtggct 437
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 438 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 497
Query: 363 agtaccgcgccggcatcgtgcc 384
||||||| ||||| || |||||
Sbjct: 498 agtaccgtgccggaattgtgcc 519
>gb|DR090373.1|DR090373 RTAL1_14_D02.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_14_D02_A029 5', mRNA sequence
Length = 777
Score = 67.9 bits (34), Expect = 8e-010
Identities = 115/142 (80%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| || || || |||| | || ||||
Sbjct: 394 tggtcacggccaccaatttctgccctcccaactatgctctgcctaacgacaatggtggct 453
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 454 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 513
Query: 363 agtaccgcgccggcatcgtgcc 384
||||||| ||||| || |||||
Sbjct: 514 agtaccgtgccggaattgtgcc 535
>gb|DR090533.1|DR090533 RTAL1_15_E12.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_15_E12_A029 5', mRNA sequence
Length = 873
Score = 67.9 bits (34), Expect = 8e-010
Identities = 115/142 (80%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| || || || |||| | || ||||
Sbjct: 142 tggtcacggccaccaatttctgccctcccaactatgctctgcctaacgacaatggtggct 201
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 202 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 261
Query: 363 agtaccgcgccggcatcgtgcc 384
||||||| ||||| || |||||
Sbjct: 262 agtaccgtgccggaattgtgcc 283
>gb|DR092307.1|DR092307 RTAL1_28_G05.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_28_G05_A029 3', mRNA sequence
Length = 539
Score = 67.9 bits (34), Expect = 8e-010
Identities = 115/142 (80%)
Strand = Plus / Minus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| || || || |||| | || ||||
Sbjct: 351 tggtcacggccaccaatttctgccctcccaactatgctctgcctaacgacaatggtggct 292
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 291 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 232
Query: 363 agtaccgcgccggcatcgtgcc 384
||||||| ||||| || |||||
Sbjct: 231 agtaccgtgccggaattgtgcc 210
>gb|DR098553.1|DR098553 STRR1_46_F12.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_46_F12_A033 3', mRNA sequence
Length = 697
Score = 67.9 bits (34), Expect = 8e-010
Identities = 115/142 (80%)
Strand = Plus / Minus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| || || || |||| | || ||||
Sbjct: 513 tggtcacggccaccaatttctgccctcccaactatgctctgcctaacgacaatggtggct 454
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 453 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 394
Query: 363 agtaccgcgccggcatcgtgcc 384
||||||| ||||| || |||||
Sbjct: 393 agtaccgtgccggaattgtgcc 372
Score = 40.1 bits (20), Expect = 0.18
Identities = 172/220 (78%), Gaps = 2/220 (0%)
Strand = Plus / Minus
Query: 431 ttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtggccggcgcg 490
||||| || ||||||||| |||||||| ||||| || ||||| || ||||| || ||
Sbjct: 325 ttcaccattaacggcttcaaatacttcaatctggttctcatcacaaatgtggctggagca 266
Query: 491 ggggacgtggtgcgcgcgagcgtcaaggcg-gccagcaccgggtggctgcccatgtccag 549
|||||| ||||| | | |||||| |||| ||||| ||||||||| | || |||||||
Sbjct: 265 ggggacttggtgagagtgagcgtgaagggtagccag-accgggtggattccattgtccag 207
Query: 550 gaactggggccagaactggcagtccaacgccatcctcgtcggccaggcgctctccttccg 609
||||||||||| || ||||| | || | || |||| ||||| ||| ||||||||| |
Sbjct: 206 aaactggggccaaaattggcaatgcagcaccgtcctggtcgggcagagcctctccttcag 147
Query: 610 cgtcaccgccagcgaccgccgcacctccacctcctggaac 649
|| || | ||| |||||| | |||||||| |||||||||
Sbjct: 146 agtaactggcagtgaccgcaggacctccacatcctggaac 107
>gb|DR100599.1|DR100599 STRR1_65_E02.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_65_E02_A033 5', mRNA sequence
Length = 477
Score = 67.9 bits (34), Expect = 8e-010
Identities = 115/142 (80%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| || || || |||| | || ||||
Sbjct: 112 tggtcacggccaccaatttctgccctcccaactatgctctgcctaacgacaatggtggct 171
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 172 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 231
Query: 363 agtaccgcgccggcatcgtgcc 384
||||||| ||||| || |||||
Sbjct: 232 agtaccgtgccggaattgtgcc 253
>gb|DR113034.1|DR113034 RTS1_32_B12.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_32_B12_A029 5', mRNA sequence
Length = 819
Score = 67.9 bits (34), Expect = 8e-010
Identities = 115/142 (80%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| || || || |||| | || ||||
Sbjct: 12 tggtcacggccaccaatttctgccctcccaactatgctctgcctaacgacaatggtggct 71
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 72 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 131
Query: 363 agtaccgcgccggcatcgtgcc 384
||||||| ||||| || |||||
Sbjct: 132 agtaccgtgccggaattgtgcc 153
Score = 40.1 bits (20), Expect = 0.18
Identities = 172/220 (78%), Gaps = 2/220 (0%)
Strand = Plus / Plus
Query: 431 ttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtggccggcgcg 490
||||| || ||||||||| |||||||| ||||| || ||||| || ||||| || ||
Sbjct: 200 ttcaccattaacggcttcaaatacttcaatctggttctcatcacaaatgtggctggagca 259
Query: 491 ggggacgtggtgcgcgcgagcgtcaaggcg-gccagcaccgggtggctgcccatgtccag 549
|||||| ||||| | | |||||| |||| ||||| ||||||||| | || |||||||
Sbjct: 260 ggggacttggtgagagtgagcgtgaagggtagccag-accgggtggattccattgtccag 318
Query: 550 gaactggggccagaactggcagtccaacgccatcctcgtcggccaggcgctctccttccg 609
||||||||||| || ||||| | || | || |||| ||||| ||| ||||||||| |
Sbjct: 319 aaactggggccaaaattggcaatgcagcaccgtcctggtcgggcagagcctctccttcag 378
Query: 610 cgtcaccgccagcgaccgccgcacctccacctcctggaac 649
|| || | ||| |||||| | |||||||| |||||||||
Sbjct: 379 agtaactggcagtgaccgcaggacctccacatcctggaac 418
>gb|DR163422.1|DR163422 RTFE1_42_G07.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_42_G07_A029 5', mRNA sequence
Length = 870
Score = 67.9 bits (34), Expect = 8e-010
Identities = 115/142 (80%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| || || || |||| | || ||||
Sbjct: 48 tggtcacggccaccaatttctgccctcccaactatgctctgcctaacgacaatggtggct 107
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 108 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 167
Query: 363 agtaccgcgccggcatcgtgcc 384
||||||| ||||| || |||||
Sbjct: 168 agtaccgtgccggaattgtgcc 189
Score = 40.1 bits (20), Expect = 0.18
Identities = 172/220 (78%), Gaps = 2/220 (0%)
Strand = Plus / Plus
Query: 431 ttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtggccggcgcg 490
||||| || ||||||||| |||||||| ||||| || ||||| || ||||| || ||
Sbjct: 236 ttcaccattaacggcttcaaatacttcaatctggttctcatcacaaatgtggctggagca 295
Query: 491 ggggacgtggtgcgcgcgagcgtcaaggcg-gccagcaccgggtggctgcccatgtccag 549
|||||| ||||| | | |||||| |||| ||||| ||||||||| | || |||||||
Sbjct: 296 ggggacttggtgagagtgagcgtgaagggtagccag-accgggtggattccattgtccag 354
Query: 550 gaactggggccagaactggcagtccaacgccatcctcgtcggccaggcgctctccttccg 609
||||||||||| || ||||| | || | || |||| ||||| ||| ||||||||| |
Sbjct: 355 aaactggggccaaaattggcaatgcagcaccgtcctggtcgggcagagcctctccttcag 414
Query: 610 cgtcaccgccagcgaccgccgcacctccacctcctggaac 649
|| || | ||| |||||| | |||||||| |||||||||
Sbjct: 415 agtaactggcagtgaccgcaggacctccacatcctggaac 454
>gb|DT636492.1|DT636492 EST1151423 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGS45 3' end, mRNA sequence
Length = 833
Score = 67.9 bits (34), Expect = 8e-010
Identities = 115/142 (80%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| || || || |||| | || ||||
Sbjct: 214 tggtcacggccaccaatttctgccctcccaactatgctctgcctaacgacaatggtggct 273
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 274 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 333
Query: 363 agtaccgcgccggcatcgtgcc 384
||||||| ||||| || |||||
Sbjct: 334 agtaccgtgccggaattgtgcc 355
>gb|DR070179.1|DR070179 RTDK1_11_F07.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_11_F07_A029 5', mRNA sequence
Length = 569
Score = 65.9 bits (33), Expect = 3e-009
Identities = 108/133 (81%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| || || || |||| | || ||||
Sbjct: 431 tggtcacggccaccaatttctgccctcccaactatgctctgcctaacgacaatggtggct 490
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 491 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 550
Query: 363 agtaccgcgccgg 375
||||||| |||||
Sbjct: 551 agtaccgtgccgg 563
>gb|AA556861.1|AA556861 703 Loblolly pine C Pinus taeda cDNA clone 6C7F, mRNA sequence
Length = 593
Score = 61.9 bits (31), Expect = 5e-008
Identities = 114/142 (80%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||||||||||||||| |||||||| |||||||| || || || |||| | || ||||
Sbjct: 402 tggtcacggccaccaatttctgccctcccaactatgctctgcctaacgacaatggtggct 461
Query: 303 ggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccg 362
||||||| || || ||||| || || || ||| ||||||| || |||||| | || ||||
Sbjct: 462 ggtgcaatcctcctcgcccccattttgatctctccatgccaattttcctcaagatggccg 521
Query: 363 agtaccgcgccggcatcgtgcc 384
| ||||| ||||| || |||||
Sbjct: 522 antaccgtgccggaattgtgcc 543
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 93,540
Number of Sequences: 355925
Number of extensions: 93540
Number of successful extensions: 26472
Number of sequences better than 0.5: 109
Number of HSP's better than 0.5 without gapping: 99
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 26198
Number of HSP's gapped (non-prelim): 239
length of query: 1044
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1025
effective length of database: 210,514,662
effective search space: 215777528550
effective search space used: 215777528550
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)