BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4534747.2.1
(628 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO166677.1|CO166677 FLD1_63_E10.g1_A029 Root flooded Pin... 40 0.11
gb|CX652350.1|CX652350 COLD1_58_B10.g1_A029 Root cold Pinus... 40 0.11
gb|DR095991.1|DR095991 STRR1_25_B08.b1_A033 Stem Response R... 40 0.11
gb|DR163514.1|DR163514 RTFE1_43_H03.b1_A029 Roots minus iro... 40 0.11
gb|DR163606.1|DR163606 RTFE1_43_H03.g1_A029 Roots minus iro... 40 0.11
gb|BE496448.1|BE496448 NXCI_018_C03_F NXCI (Nsf Xylem Compr... 38 0.42
gb|CF401310.1|CF401310 RTWW1_11_E11.g1_A015 Well-watered lo... 38 0.42
>gb|CO166677.1|CO166677 FLD1_63_E10.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_63_E10_A029 5', mRNA sequence
Length = 882
Score = 40.1 bits (20), Expect = 0.11
Identities = 68/84 (80%)
Strand = Plus / Minus
Query: 126 agggccacgggagcgcggtggactggtggaccttcggcatcttcctgtacgagctcctcc 185
||||||| ||||| || || ||||||||||| || || ||||| | |||||||| ||
Sbjct: 622 agggccatgggagtgctgttgactggtggacatttgggatctttttatacgagctgcttt 563
Query: 186 atggcacgacgccgttcaaggggg 209
| || ||||| |||||||||||||
Sbjct: 562 acgggacgacaccgttcaaggggg 539
>gb|CX652350.1|CX652350 COLD1_58_B10.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_58_B10_A029 5', mRNA sequence
Length = 781
Score = 40.1 bits (20), Expect = 0.11
Identities = 68/84 (80%)
Strand = Plus / Minus
Query: 126 agggccacgggagcgcggtggactggtggaccttcggcatcttcctgtacgagctcctcc 185
||||||| ||||| || || ||||||||||| || || ||||| | |||||||| ||
Sbjct: 534 agggccatgggagtgctgttgactggtggacatttgggatctttttatacgagctgcttt 475
Query: 186 atggcacgacgccgttcaaggggg 209
| || ||||| |||||||||||||
Sbjct: 474 acgggacgacaccgttcaaggggg 451
>gb|DR095991.1|DR095991 STRR1_25_B08.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_25_B08_A033 3', mRNA sequence
Length = 843
Score = 40.1 bits (20), Expect = 0.11
Identities = 68/84 (80%)
Strand = Plus / Plus
Query: 126 agggccacgggagcgcggtggactggtggaccttcggcatcttcctgtacgagctcctcc 185
||||||| ||||| || || ||||||||||| || || ||||| | |||||||| ||
Sbjct: 325 agggccatgggagtgctgttgactggtggacatttgggatctttttatacgagctgcttt 384
Query: 186 atggcacgacgccgttcaaggggg 209
| || ||||| |||||||||||||
Sbjct: 385 acgggacgacaccgttcaaggggg 408
>gb|DR163514.1|DR163514 RTFE1_43_H03.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_43_H03_A029 3', mRNA sequence
Length = 774
Score = 40.1 bits (20), Expect = 0.11
Identities = 68/84 (80%)
Strand = Plus / Plus
Query: 126 agggccacgggagcgcggtggactggtggaccttcggcatcttcctgtacgagctcctcc 185
||||||| ||||| || || ||||||||||| || || ||||| | |||||||| ||
Sbjct: 145 agggccatgggagtgctgttgactggtggacatttgggatctttttatacgagctgcttt 204
Query: 186 atggcacgacgccgttcaaggggg 209
| || ||||| |||||||||||||
Sbjct: 205 acgggacgacaccgttcaaggggg 228
>gb|DR163606.1|DR163606 RTFE1_43_H03.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_43_H03_A029 5', mRNA sequence
Length = 871
Score = 40.1 bits (20), Expect = 0.11
Identities = 68/84 (80%)
Strand = Plus / Plus
Query: 126 agggccacgggagcgcggtggactggtggaccttcggcatcttcctgtacgagctcctcc 185
||||||| ||||| || || ||||||||||| || || ||||| | |||||||| ||
Sbjct: 282 agggccatgggagtgctgttgactggtggacatttgggatctttttatacgagctgcttt 341
Query: 186 atggcacgacgccgttcaaggggg 209
| || ||||| |||||||||||||
Sbjct: 342 acgggacgacaccgttcaaggggg 365
>gb|BE496448.1|BE496448 NXCI_018_C03_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_018_C03 5' similar to Arabidopsis
thaliana sequence At5g03640 protein kinase -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 523
Score = 38.2 bits (19), Expect = 0.42
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 368 gagatcaagcagcacccgttctt 390
|||||||| ||||||||||||||
Sbjct: 227 gagatcaaacagcacccgttctt 249
>gb|CF401310.1|CF401310 RTWW1_11_E11.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_11_E11_A015 5', mRNA sequence
Length = 783
Score = 38.2 bits (19), Expect = 0.42
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 126 agggccacgggagcgcggtggactggtggac 156
|||| ||||| ||||| ||||||||||||||
Sbjct: 428 agggtcacggcagcgccgtggactggtggac 458
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 59,403
Number of Sequences: 355925
Number of extensions: 59403
Number of successful extensions: 15703
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15696
Number of HSP's gapped (non-prelim): 7
length of query: 628
length of database: 217,277,237
effective HSP length: 19
effective length of query: 609
effective length of database: 210,514,662
effective search space: 128203429158
effective search space used: 128203429158
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)