BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3977955.2.1
(867 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|BD236381.1| Materials and method for modification of pl... 44 0.009
gb|CF479200.1|CF479200 RTWW3_24_E03.g1_A022 Well-watered lo... 40 0.15
gb|CF664790.1|CF664790 RTCNT1_12_A10.b1_A029 Root control P... 40 0.15
gb|CF664872.1|CF664872 RTCNT1_12_A10.g1_A029 Root control P... 40 0.15
gb|DR013467.1|DR013467 HEAT1_19_B05.g1_A029 Root at 37 C fo... 40 0.15
gb|DR070485.1|DR070485 RTDK1_13_D04.g1_A029 Roots, dark Pin... 40 0.15
gb|DR168448.1|DR168448 RTPHOS1_25_B11.g1_A029 Roots minus p... 40 0.15
>dbj|BD236381.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 440
Score = 44.1 bits (22), Expect = 0.009
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 756 ggagttgccgaagatgaagtcgatggtgcc 785
|||||||||||||||||| || ||||||||
Sbjct: 400 ggagttgccgaagatgaaatctatggtgcc 371
>gb|CF479200.1|CF479200 RTWW3_24_E03.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_24_E03_A022 5', mRNA sequence
Length = 753
Score = 40.1 bits (20), Expect = 0.15
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 759 gttgccgaagatgaagtcgatggtgccg 786
||||||||||||||| || |||||||||
Sbjct: 60 gttgccgaagatgaaatctatggtgccg 33
>gb|CF664790.1|CF664790 RTCNT1_12_A10.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_12_A10_A029 3', mRNA sequence
Length = 676
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 63 taataataaaagatgtatat 82
||||||||||||||||||||
Sbjct: 77 taataataaaagatgtatat 96
>gb|CF664872.1|CF664872 RTCNT1_12_A10.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_12_A10_A029 5', mRNA sequence
Length = 635
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 63 taataataaaagatgtatat 82
||||||||||||||||||||
Sbjct: 289 taataataaaagatgtatat 308
>gb|DR013467.1|DR013467 HEAT1_19_B05.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_19_B05_A029 5', mRNA sequence
Length = 741
Score = 40.1 bits (20), Expect = 0.15
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 759 gttgccgaagatgaagtcgatggtgccg 786
||||||||||||||| || |||||||||
Sbjct: 242 gttgccgaagatgaaatctatggtgccg 215
>gb|DR070485.1|DR070485 RTDK1_13_D04.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_13_D04_A029 5', mRNA sequence
Length = 854
Score = 40.1 bits (20), Expect = 0.15
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 759 gttgccgaagatgaagtcgatggtgccg 786
||||||||||||||| || |||||||||
Sbjct: 151 gttgccgaagatgaaatctatggtgccg 124
>gb|DR168448.1|DR168448 RTPHOS1_25_B11.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_25_B11_A029 5', mRNA sequence
Length = 629
Score = 40.1 bits (20), Expect = 0.15
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 759 gttgccgaagatgaagtcgatggtgccg 786
||||||||||||||| || |||||||||
Sbjct: 262 gttgccgaagatgaaatctatggtgccg 235
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 77,579
Number of Sequences: 355925
Number of extensions: 77579
Number of successful extensions: 22816
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22808
Number of HSP's gapped (non-prelim): 8
length of query: 867
length of database: 217,277,237
effective HSP length: 19
effective length of query: 848
effective length of database: 210,514,662
effective search space: 178516433376
effective search space used: 178516433376
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)