BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3922840.2.1
         (683 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CX712810.1|CX712810  RTPQ1_5_A04.b1_A032 Roots treated wi...    42   0.029
gb|CX712881.1|CX712881  RTPQ1_5_A04.g1_A032 Roots treated wi...    42   0.029
gb|DN612786.1|DN612786  EST965836 Subtracted pine embryo lib...    42   0.029
gb|DN614087.1|DN614087  EST967137 Subtracted pine embryo lib...    42   0.029

>gb|CX712810.1|CX712810 RTPQ1_5_A04.b1_A032 Roots treated with paraquat Pinus taeda cDNA
           clone RTPQ1_5_A04_A032 3', mRNA sequence
          Length = 869

 Score = 42.1 bits (21), Expect = 0.029
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 310 ttcatgttggcgtagcaggggcaga 334
           ||||||||||| |||||||||||||
Sbjct: 266 ttcatgttggcatagcaggggcaga 242



>gb|CX712881.1|CX712881 RTPQ1_5_A04.g1_A032 Roots treated with paraquat Pinus taeda cDNA
           clone RTPQ1_5_A04_A032 5', mRNA sequence
          Length = 905

 Score = 42.1 bits (21), Expect = 0.029
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 310 ttcatgttggcgtagcaggggcaga 334
           ||||||||||| |||||||||||||
Sbjct: 368 ttcatgttggcatagcaggggcaga 344



>gb|DN612786.1|DN612786 EST965836 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
           clone PSABK11, mRNA sequence
          Length = 446

 Score = 42.1 bits (21), Expect = 0.029
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 310 ttcatgttggcgtagcaggggcaga 334
           ||||||||||| |||||||||||||
Sbjct: 80  ttcatgttggcatagcaggggcaga 56



>gb|DN614087.1|DN614087 EST967137 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
           clone PSABZ87, mRNA sequence
          Length = 332

 Score = 42.1 bits (21), Expect = 0.029
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 310 ttcatgttggcgtagcaggggcaga 334
           ||||||||||| |||||||||||||
Sbjct: 289 ttcatgttggcatagcaggggcaga 313



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 63,041
Number of Sequences: 355925
Number of extensions: 63041
Number of successful extensions: 18687
Number of sequences better than  0.5: 4
Number of HSP's better than  0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18683
Number of HSP's gapped (non-prelim): 4
length of query: 683
length of database: 217,277,237
effective HSP length: 19
effective length of query: 664
effective length of database: 210,514,662
effective search space: 139781735568
effective search space used: 139781735568
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)