BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3871943.2.1
         (1085 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CF400929.1|CF400929  RTWW1_8_E02.g1_A015 Well-watered lob...    42   0.047
gb|CO361821.1|CO361821  NDL2_7_G05.b1_A029 Needles control 2...    42   0.047
gb|CO361900.1|CO361900  NDL2_7_G05.g1_A029 Needles control 2...    42   0.047
gb|DR022117.1|DR022117  STRS1_49_A09.b1_A034 Shoot tip pitch...    42   0.047
gb|DR119772.1|DR119772  RTMG1_25_A03.g2_A029 Roots minus mag...    42   0.047
gb|DR161686.1|DR161686  RTFE1_13_G04.b1_A029 Roots minus iro...    42   0.047
gb|DR689569.1|DR689569  EST1079655 Normalized pine embryo li...    42   0.047
gb|DT635401.1|DT635401  EST1150332 Normalized pine embryo li...    42   0.047
dbj|BD236340.1|  Materials and method for modification of pl...    42   0.047

>gb|CF400929.1|CF400929 RTWW1_8_E02.g1_A015 Well-watered loblolly pine roots WW1 Pinus
           taeda cDNA clone RTWW1_8_E02_A015 5', mRNA sequence
          Length = 539

 Score = 42.1 bits (21), Expect = 0.047
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 792 gagttgccgaagatgaagtccacggtgcc 820
           ||||||||||||||||| || ||||||||
Sbjct: 355 gagttgccgaagatgaaatctacggtgcc 327



>gb|CO361821.1|CO361821 NDL2_7_G05.b1_A029 Needles control 2 Pinus taeda cDNA clone
           NDL2_7_G05_A029 3', mRNA sequence
          Length = 817

 Score = 42.1 bits (21), Expect = 0.047
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 792 gagttgccgaagatgaagtccacggtgcc 820
           ||||||||||||||||| || ||||||||
Sbjct: 176 gagttgccgaagatgaaatctacggtgcc 148



>gb|CO361900.1|CO361900 NDL2_7_G05.g1_A029 Needles control 2 Pinus taeda cDNA clone
           NDL2_7_G05_A029 5', mRNA sequence
          Length = 812

 Score = 42.1 bits (21), Expect = 0.047
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 792 gagttgccgaagatgaagtccacggtgcc 820
           ||||||||||||||||| || ||||||||
Sbjct: 314 gagttgccgaagatgaaatctacggtgcc 286



>gb|DR022117.1|DR022117 STRS1_49_A09.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
           cDNA clone STRS1_49_A09_A034 3', mRNA sequence
          Length = 827

 Score = 42.1 bits (21), Expect = 0.047
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 792 gagttgccgaagatgaagtccacggtgcc 820
           ||||||||||||||||| || ||||||||
Sbjct: 112 gagttgccgaagatgaaatctacggtgcc 84



>gb|DR119772.1|DR119772 RTMG1_25_A03.g2_A029 Roots minus magnesium Pinus taeda cDNA clone
           RTMG1_25_A03_A029 5', mRNA sequence
          Length = 724

 Score = 42.1 bits (21), Expect = 0.047
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 792 gagttgccgaagatgaagtccacggtgcc 820
           ||||||||||||||||| || ||||||||
Sbjct: 291 gagttgccgaagatgaaatctacggtgcc 263



>gb|DR161686.1|DR161686 RTFE1_13_G04.b1_A029 Roots minus iron Pinus taeda cDNA clone
           RTFE1_13_G04_A029 3', mRNA sequence
          Length = 699

 Score = 42.1 bits (21), Expect = 0.047
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 792 gagttgccgaagatgaagtccacggtgcc 820
           ||||||||||||||||| || ||||||||
Sbjct: 334 gagttgccgaagatgaaatctacggtgcc 362



>gb|DR689569.1|DR689569 EST1079655 Normalized pine embryo library, Lib_D Pinus taeda cDNA
           clone PWACK36 3' end, mRNA sequence
          Length = 687

 Score = 42.1 bits (21), Expect = 0.047
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 792 gagttgccgaagatgaagtccacggtgcc 820
           |||||||| |||||||||||||| |||||
Sbjct: 670 gagttgccaaagatgaagtccactgtgcc 642



>gb|DT635401.1|DT635401 EST1150332 Normalized pine embryo library, Lib_D Pinus taeda cDNA
           clone PIMGG44 3' end, mRNA sequence
          Length = 732

 Score = 42.1 bits (21), Expect = 0.047
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 792 gagttgccgaagatgaagtccacggtgcc 820
           |||||||| |||||||||||||| |||||
Sbjct: 678 gagttgccaaagatgaagtccactgtgcc 650



>dbj|BD236340.1| Materials and method for modification of plant cell wall
           polysaccharides
          Length = 295

 Score = 42.1 bits (21), Expect = 0.047
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 792 gagttgccgaagatgaagtccacggtgcc 820
           ||||||||||||||||| || ||||||||
Sbjct: 200 gagttgccgaagatgaaatctacggtgcc 172



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 89,926
Number of Sequences: 355925
Number of extensions: 89926
Number of successful extensions: 21208
Number of sequences better than  0.5: 11
Number of HSP's better than  0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21172
Number of HSP's gapped (non-prelim): 36
length of query: 1085
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1066
effective length of database: 210,514,662
effective search space: 224408629692
effective search space used: 224408629692
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)