BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3866391.2.1
         (613 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DR017352.1|DR017352  STRS1_15_F03.g1_A034 Shoot tip pitch...    40   0.10 
gb|DR070550.1|DR070550  RTDK1_14_B09.b1_A029 Roots, dark Pin...    38   0.41 
gb|DR070616.1|DR070616  RTDK1_14_B09.g1_A029 Roots, dark Pin...    38   0.41 

>gb|DR017352.1|DR017352 STRS1_15_F03.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
           cDNA clone STRS1_15_F03_A034 5', mRNA sequence
          Length = 551

 Score = 40.1 bits (20), Expect = 0.10
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 294 cctacctcaaggcagtcgtcaaagagacgctgcggctccacatg 337
           |||||||| | || || ||||||||||| ||||| |||||||||
Sbjct: 21  cctacctccaagccgtggtcaaagagaccctgcgtctccacatg 64



>gb|DR070550.1|DR070550 RTDK1_14_B09.b1_A029 Roots, dark Pinus taeda cDNA clone
           RTDK1_14_B09_A029 3', mRNA sequence
          Length = 832

 Score = 38.2 bits (19), Expect = 0.41
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                          
Query: 551 ataccgttcggcgcagggagaaggatgtgcc 581
           ||||| || ||||||||||||||||| ||||
Sbjct: 372 ataccatttggcgcagggagaaggatttgcc 402



>gb|DR070616.1|DR070616 RTDK1_14_B09.g1_A029 Roots, dark Pinus taeda cDNA clone
           RTDK1_14_B09_A029 5', mRNA sequence
          Length = 692

 Score = 38.2 bits (19), Expect = 0.41
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                          
Query: 551 ataccgttcggcgcagggagaaggatgtgcc 581
           ||||| || ||||||||||||||||| ||||
Sbjct: 358 ataccatttggcgcagggagaaggatttgcc 388



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 79,715
Number of Sequences: 355925
Number of extensions: 79715
Number of successful extensions: 23160
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23157
Number of HSP's gapped (non-prelim): 3
length of query: 613
length of database: 217,277,237
effective HSP length: 19
effective length of query: 594
effective length of database: 210,514,662
effective search space: 125045709228
effective search space used: 125045709228
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)