BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3848767.2.1
         (1467 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DR069530.1|DR069530  RTDK1_7_F12.g1_A029 Roots, dark Pinu...    46   0.004

>gb|DR069530.1|DR069530 RTDK1_7_F12.g1_A029 Roots, dark Pinus taeda cDNA clone
           RTDK1_7_F12_A029 5', mRNA sequence
          Length = 816

 Score = 46.1 bits (23), Expect = 0.004
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 408 ccacgagttcttcacgatccagtagtc 434
           |||||||||||| ||||||||||||||
Sbjct: 299 ccacgagttcttgacgatccagtagtc 325



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 171,229
Number of Sequences: 355925
Number of extensions: 171229
Number of successful extensions: 57499
Number of sequences better than  0.5: 1
Number of HSP's better than  0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57497
Number of HSP's gapped (non-prelim): 2
length of query: 1467
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1448
effective length of database: 210,514,662
effective search space: 304825230576
effective search space used: 304825230576
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)