BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3829483.2.1
(1069 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF665055.1|CF665055 RTCNT1_13_C10.g1_A029 Root control P... 62 5e-008
gb|CF666205.1|CF666205 RTCNT1_21_D05.g1_A029 Root control P... 62 5e-008
gb|CF668641.1|CF668641 RTCNT1_37_F07.g1_A029 Root control P... 62 5e-008
gb|CF670972.1|CF670972 RTCNT1_53_G07.g1_A029 Root control P... 62 5e-008
gb|CX647534.1|CX647534 COLD1_17_A03.g1_A029 Root cold Pinus... 62 5e-008
gb|CX653214.1|CX653214 COLD1_64_D05.b1_A029 Root cold Pinus... 62 5e-008
gb|CX653288.1|CX653288 COLD1_64_D05.g1_A029 Root cold Pinus... 62 5e-008
gb|DR010884.1|DR010884 HEAT1_2_A05.b1_A029 Root at 37 C for... 62 5e-008
gb|DR010961.1|DR010961 HEAT1_2_A05.g1_A029 Root at 37 C for... 62 5e-008
gb|CF664978.1|CF664978 RTCNT1_13_C10.b1_A029 Root control P... 60 2e-007
gb|CF395690.1|CF395690 RTDS2_16_A02.g1_A021 Drought-stresse... 56 3e-006
gb|AW010234.1|AW010234 ST03F06 Pine TriplEx shoot tip libra... 54 1e-005
gb|CF390301.1|CF390301 RTDR2_18_B07.g1_A021 Loblolly pine r... 54 1e-005
gb|CF665536.1|CF665536 RTCNT1_16_D05.g1_A029 Root control P... 54 1e-005
gb|CF667732.1|CF667732 RTCNT1_32_E07.b1_A029 Root control P... 54 1e-005
gb|CF667817.1|CF667817 RTCNT1_32_E07.g1_A029 Root control P... 54 1e-005
gb|CF668197.1|CF668197 RTCNT1_35_B06.b1_A029 Root control P... 54 1e-005
gb|CO164193.1|CO164193 FLD1_46_H10.b1_A029 Root flooded Pin... 54 1e-005
gb|CO164268.1|CO164268 FLD1_46_H10.g1_A029 Root flooded Pin... 54 1e-005
gb|CO164769.1|CO164769 FLD1_50_E04.b1_A029 Root flooded Pin... 54 1e-005
gb|CO169071.1|CO169071 NDL1_4_B06.g1_A029 Needles control P... 54 1e-005
gb|CV031918.1|CV031918 RTNACL1_4_C09.g1_A029 Roots plus add... 54 1e-005
gb|CX649701.1|CX649701 COLD1_41_A07.b1_A029 Root cold Pinus... 54 1e-005
gb|DR051113.1|DR051113 RTBOR1_27_F04.g1_A029 Roots plus add... 54 1e-005
gb|DR068567.1|DR068567 RTDK1_1_C09.g1_A029 Roots, dark Pinu... 54 1e-005
gb|DR161647.1|DR161647 RTFE1_13_C07.b1_A029 Roots minus iro... 54 1e-005
gb|CO158862.1|CO158862 FLD1_9_F07.g1_A029 Root flooded Pinu... 52 5e-005
gb|CX649777.1|CX649777 COLD1_41_A07.g1_A029 Root cold Pinus... 52 5e-005
gb|DR053024.1|DR053024 RTCA1_8_B11.g1_A029 Roots minus calc... 52 5e-005
gb|CF666144.1|CF666144 RTCNT1_21_D05.b1_A029 Root control P... 48 7e-004
gb|CO167625.1|CO167625 FLD1_70_D02.b1_A029 Root flooded Pin... 48 7e-004
gb|CF470657.1|CF470657 RTDS1_13_E08.g1_A015 Drought-stresse... 46 0.003
gb|CX651236.1|CX651236 COLD1_51_C04.b1_A029 Root cold Pinus... 46 0.003
gb|CF665344.1|CF665344 RTCNT1_15_A03.g1_A029 Root control P... 44 0.012
gb|CF667326.1|CF667326 RTCNT1_29_B05.g1_A029 Root control P... 44 0.012
gb|CF668277.1|CF668277 RTCNT1_35_B06.g1_A029 Root control P... 44 0.012
gb|BX678272.1|BX678272 BX678272 RN Pinus pinaster cDNA clon... 44 0.012
gb|BX678400.1|BX678400 BX678400 RS Pinus pinaster cDNA clon... 44 0.012
gb|BX681323.1|BX681323 BX681323 RS Pinus pinaster cDNA clon... 44 0.012
gb|CO171833.1|CO171833 NDL1_25_A09.b1_A029 Needles control ... 42 0.046
gb|DR012723.1|DR012723 HEAT1_14_D04.g1_A029 Root at 37 C fo... 42 0.046
gb|DR742686.1|DR742686 RTCU1_5_G10.g2_A029 Roots plus added... 42 0.046
gb|CO196998.1|CO196998 GEO1_3_E09.b1_A029 Root gravitropism... 40 0.18
gb|CX650204.1|CX650204 COLD1_44_D11.b1_A029 Root cold Pinus... 40 0.18
>gb|CF665055.1|CF665055 RTCNT1_13_C10.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_13_C10_A029 5', mRNA sequence
Length = 659
Score = 61.9 bits (31), Expect = 5e-008
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 154 caagagcgagctgctcctcgagtccaacccggtgcacaagaaggtgcccgtgctcctcca 213
||||||||||||||| || | || ||||| || ||||||||| | || |||||| ||||
Sbjct: 118 caagagcgagctgctactgcaatcaaaccctgttcacaagaagattccagtgctcatcca 177
Query: 214 caacggcaagcctgt 228
|||||||||||||||
Sbjct: 178 caacggcaagcctgt 192
>gb|CF666205.1|CF666205 RTCNT1_21_D05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_21_D05_A029 5', mRNA sequence
Length = 253
Score = 61.9 bits (31), Expect = 5e-008
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 154 caagagcgagctgctcctcgagtccaacccggtgcacaagaaggtgcccgtgctcctcca 213
||||||||||||||| || | || ||||| || ||||||||| | || |||||| ||||
Sbjct: 165 caagagcgagctgctactgcaatcaaaccctgttcacaagaagattccggtgctcatcca 224
Query: 214 caacggcaagcctgt 228
|||||||||||||||
Sbjct: 225 caacggcaagcctgt 239
>gb|CF668641.1|CF668641 RTCNT1_37_F07.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_37_F07_A029 5', mRNA sequence
Length = 774
Score = 61.9 bits (31), Expect = 5e-008
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 154 caagagcgagctgctcctcgagtccaacccggtgcacaagaaggtgcccgtgctcctcca 213
||||||||||||||| || | || ||||| || ||||||||| | || |||||| ||||
Sbjct: 113 caagagcgagctgctactgcaatcaaaccctgttcacaagaagattccagtgctcatcca 172
Query: 214 caacggcaagcctgt 228
|||||||||||||||
Sbjct: 173 caacggcaagcctgt 187
>gb|CF670972.1|CF670972 RTCNT1_53_G07.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_53_G07_A029 5', mRNA sequence
Length = 714
Score = 61.9 bits (31), Expect = 5e-008
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 154 caagagcgagctgctcctcgagtccaacccggtgcacaagaaggtgcccgtgctcctcca 213
||||||||||||||| || | || ||||| || ||||||||| | || |||||| ||||
Sbjct: 153 caagagcgagctgctactgcaatcaaaccctgttcacaagaagattccagtgctcatcca 212
Query: 214 caacggcaagcctgt 228
|||||||||||||||
Sbjct: 213 caacggcaagcctgt 227
>gb|CX647534.1|CX647534 COLD1_17_A03.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_17_A03_A029 5', mRNA sequence
Length = 478
Score = 61.9 bits (31), Expect = 5e-008
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 154 caagagcgagctgctcctcgagtccaacccggtgcacaagaaggtgcccgtgctcctcca 213
||||||||||||||| || | || ||||| || ||||||||| | || |||||| ||||
Sbjct: 133 caagagcgagctgctactgcaatcaaaccctgttcacaagaagattccagtgctcatcca 192
Query: 214 caacggcaagcctgt 228
|||||||||||||||
Sbjct: 193 caacggcaagcctgt 207
>gb|CX653214.1|CX653214 COLD1_64_D05.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_64_D05_A029 3', mRNA sequence
Length = 805
Score = 61.9 bits (31), Expect = 5e-008
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 154 caagagcgagctgctcctcgagtccaacccggtgcacaagaaggtgcccgtgctcctcca 213
||||||||||||||| || | || ||||| || ||||||||| | || |||||| ||||
Sbjct: 48 caagagcgagctgctactgcaatcaaaccctgttcacaagaagattccggtgctcatcca 107
Query: 214 caacggcaagcctgt 228
|||||||||||||||
Sbjct: 108 caacggcaagcctgt 122
>gb|CX653288.1|CX653288 COLD1_64_D05.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_64_D05_A029 5', mRNA sequence
Length = 759
Score = 61.9 bits (31), Expect = 5e-008
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 154 caagagcgagctgctcctcgagtccaacccggtgcacaagaaggtgcccgtgctcctcca 213
||||||||||||||| || | || ||||| || ||||||||| | || |||||| ||||
Sbjct: 146 caagagcgagctgctactgcaatcaaaccctgttcacaagaagattccggtgctcatcca 205
Query: 214 caacggcaagcctgt 228
|||||||||||||||
Sbjct: 206 caacggcaagcctgt 220
>gb|DR010884.1|DR010884 HEAT1_2_A05.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_2_A05_A029 3', mRNA sequence
Length = 743
Score = 61.9 bits (31), Expect = 5e-008
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 154 caagagcgagctgctcctcgagtccaacccggtgcacaagaaggtgcccgtgctcctcca 213
||||||||||||||| || | || ||||| || ||||||||| | || |||||| ||||
Sbjct: 569 caagagcgagctgctactgcaatcaaaccctgttcacaagaagattccggtgctcatcca 510
Query: 214 caacggcaagcctgt 228
|||||||||||||||
Sbjct: 509 caacggcaagcctgt 495
>gb|DR010961.1|DR010961 HEAT1_2_A05.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_2_A05_A029 5', mRNA sequence
Length = 796
Score = 61.9 bits (31), Expect = 5e-008
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 154 caagagcgagctgctcctcgagtccaacccggtgcacaagaaggtgcccgtgctcctcca 213
||||||||||||||| || | || ||||| || ||||||||| | || |||||| ||||
Sbjct: 757 caagagcgagctgctactgcaatcaaaccctgttcacaagaagattccggtgctcatcca 698
Query: 214 caacggcaagcctgt 228
|||||||||||||||
Sbjct: 697 caacggcaagcctgt 683
>gb|CF664978.1|CF664978 RTCNT1_13_C10.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_13_C10_A029 3', mRNA sequence
Length = 773
Score = 60.0 bits (30), Expect = 2e-007
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 155 aagagcgagctgctcctcgagtccaacccggtgcacaagaaggtgcccgtgctcctccac 214
|||||||||||||| || | || ||||| || ||||||||| | || |||||| |||||
Sbjct: 1 aagagcgagctgctactgcaatcaaaccctgttcacaagaagattccagtgctcatccac 60
Query: 215 aacggcaagcctgt 228
||||||||||||||
Sbjct: 61 aacggcaagcctgt 74
>gb|CF395690.1|CF395690 RTDS2_16_A02.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_16_A02_A021 5', mRNA sequence
Length = 762
Score = 56.0 bits (28), Expect = 3e-006
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 157 gagcgagctgctcctcgagtccaacccggtgcacaagaaggtgcccgtgctcctccacaa 216
|||||||||||| || | || ||||| || ||||||||| | || |||||| |||||||
Sbjct: 1 gagcgagctgctactgcaatcaaaccctgttcacaagaagattccggtgctcatccacaa 60
Query: 217 cggcaagcctgt 228
||||||||||||
Sbjct: 61 cggcaagcctgt 72
>gb|AW010234.1|AW010234 ST03F06 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST03F06, mRNA sequence
Length = 763
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 154 caagagcgagctgctcctcgagtccaacccggtgcacaagaaggtgcccgtgctcctcca 213
||||||||| ||||| || | || ||||| || ||||||||| | || |||||| ||||
Sbjct: 187 caagagcgacctgctactgcaatcaaaccctgttcacaagaagattccggtgctcatcca 246
Query: 214 caacggcaagcctgt 228
|||||||||||||||
Sbjct: 247 caacggcaagcctgt 261
>gb|CF390301.1|CF390301 RTDR2_18_B07.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_18_B07_A021 5', mRNA
sequence
Length = 725
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 154 caagagcgagctgctcctcgagtccaacccggtgcacaagaaggtgcccgtgctcctcca 213
||||||||||||||| || | || ||||| || ||||||||| | || ||||| ||||
Sbjct: 157 caagagcgagctgctactgcaatcaaaccctgttcacaagaagattccattgctcatcca 216
Query: 214 caacggcaagcctgt 228
|||||||||||||||
Sbjct: 217 caacggcaagcctgt 231
>gb|CF665536.1|CF665536 RTCNT1_16_D05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_16_D05_A029 5', mRNA sequence
Length = 533
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 154 caagagcgagctgctcctcgagtccaacccggtgcacaagaaggtgcccgtgctcctcca 213
||||||||| ||||| || | || ||||| || ||||||||| | || |||||| ||||
Sbjct: 145 caagagcgacctgctactgcaatcaaaccctgttcacaagaagattccggtgctcatcca 204
Query: 214 caacggcaagcctgt 228
|||||||||||||||
Sbjct: 205 caacggcaagcctgt 219
>gb|CF667732.1|CF667732 RTCNT1_32_E07.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_32_E07_A029 3', mRNA sequence
Length = 740
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Minus
Query: 154 caagagcgagctgctcctcgagtccaacccggtgcacaagaaggtgcccgtgctcctcca 213
||||||||| ||||| || | || ||||| || ||||||||| | || |||||| ||||
Sbjct: 575 caagagcgacctgctactgcaatcaaaccctgttcacaagaagattccggtgctcatcca 516
Query: 214 caacggcaagcctgt 228
|||||||||||||||
Sbjct: 515 caacggcaagcctgt 501
>gb|CF667817.1|CF667817 RTCNT1_32_E07.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_32_E07_A029 5', mRNA sequence
Length = 780
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Minus
Query: 154 caagagcgagctgctcctcgagtccaacccggtgcacaagaaggtgcccgtgctcctcca 213
||||||||| ||||| || | || ||||| || ||||||||| | || |||||| ||||
Sbjct: 735 caagagcgacctgctactgcaatcaaaccctgttcacaagaagattccggtgctcatcca 676
Query: 214 caacggcaagcctgt 228
|||||||||||||||
Sbjct: 675 caacggcaagcctgt 661
>gb|CF668197.1|CF668197 RTCNT1_35_B06.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_35_B06_A029 3', mRNA sequence
Length = 764
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Minus
Query: 154 caagagcgagctgctcctcgagtccaacccggtgcacaagaaggtgcccgtgctcctcca 213
||||||||| ||||| || | || ||||| || ||||||||| | || |||||| ||||
Sbjct: 608 caagagcgacctgctactgcaatcaaaccctgttcacaagaagattccggtgctcatcca 549
Query: 214 caacggcaagcctgt 228
|||||||||||||||
Sbjct: 548 caacggcaagcctgt 534
>gb|CO164193.1|CO164193 FLD1_46_H10.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_46_H10_A029 3', mRNA sequence
Length = 874
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 154 caagagcgagctgctcctcgagtccaacccggtgcacaagaaggtgcccgtgctcctcca 213
||||||||||||||| || | || ||||| || |||| |||| | || |||||| ||||
Sbjct: 5 caagagcgagctgctactgcaatcaaaccctgttcacatgaagattccggtgctcatcca 64
Query: 214 caacggcaagcctgt 228
|||||||||||||||
Sbjct: 65 caacggcaagcctgt 79
>gb|CO164268.1|CO164268 FLD1_46_H10.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_46_H10_A029 5', mRNA sequence
Length = 900
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 154 caagagcgagctgctcctcgagtccaacccggtgcacaagaaggtgcccgtgctcctcca 213
||||||||||||||| || | || ||||| || |||| |||| | || |||||| ||||
Sbjct: 116 caagagcgagctgctactgcaatcaaaccctgttcacatgaagattccggtgctcatcca 175
Query: 214 caacggcaagcctgt 228
|||||||||||||||
Sbjct: 176 caacggcaagcctgt 190
>gb|CO164769.1|CO164769 FLD1_50_E04.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_50_E04_A029 3', mRNA sequence
Length = 854
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 154 caagagcgagctgctcctcgagtccaacccggtgcacaagaaggtgcccgtgctcctcca 213
||||||||| ||||| || | || ||||| || ||||||||| | || |||||| ||||
Sbjct: 46 caagagcgacctgctactgcaatcaaaccctgttcacaagaagattccggtgctcatcca 105
Query: 214 caacggcaagcctgt 228
|||||||||||||||
Sbjct: 106 caacggcaagcctgt 120
>gb|CO169071.1|CO169071 NDL1_4_B06.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_4_B06_A029 5', mRNA sequence
Length = 674
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 154 caagagcgagctgctcctcgagtccaacccggtgcacaagaaggtgcccgtgctcctcca 213
||||||||| ||||| || | || ||||| || ||||||||| | || |||||| ||||
Sbjct: 106 caagagcgacctgctactgcaatcaaaccctgttcacaagaagattccggtgctcatcca 165
Query: 214 caacggcaagcctgt 228
|||||||||||||||
Sbjct: 166 caacggcaagcctgt 180
>gb|CV031918.1|CV031918 RTNACL1_4_C09.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_4_C09_A029 5', mRNA sequence
Length = 777
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 154 caagagcgagctgctcctcgagtccaacccggtgcacaagaaggtgcccgtgctcctcca 213
||||||||||||||| || | || ||||| || ||||||||| | || ||||| ||||
Sbjct: 148 caagagcgagctgctactgcaatcaaaccctgttcacaagaagattccattgctcatcca 207
Query: 214 caacggcaagcctgt 228
|||||||||||||||
Sbjct: 208 caacggcaagcctgt 222
>gb|CX649701.1|CX649701 COLD1_41_A07.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_41_A07_A029 3', mRNA sequence
Length = 802
Score = 54.0 bits (27), Expect = 1e-005
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 158 agcgagctgctcctcgagtccaacccggtgcacaagaaggtgcccgtgctcctccacaac 217
||||||||||| || | || ||||| || ||||||||| | || |||||| ||||||||
Sbjct: 618 agcgagctgctactgcaatcaaaccctgttcacaagaagtttccggtgctcatccacaac 559
Query: 218 ggcaagcctgt 228
|||||||||||
Sbjct: 558 ggcaagcctgt 548
>gb|DR051113.1|DR051113 RTBOR1_27_F04.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_27_F04_A029 5', mRNA sequence
Length = 816
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 154 caagagcgagctgctcctcgagtccaacccggtgcacaagaaggtgcccgtgctcctcca 213
||||||||| ||||| || | || ||||| || ||||||||| | || |||||| ||||
Sbjct: 133 caagagcgacctgctactgcaatcaaaccctgttcacaagaagattccggtgctcatcca 192
Query: 214 caacggcaagcctgt 228
|||||||||||||||
Sbjct: 193 caacggcaagcctgt 207
>gb|DR068567.1|DR068567 RTDK1_1_C09.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_1_C09_A029 5', mRNA sequence
Length = 754
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 154 caagagcgagctgctcctcgagtccaacccggtgcacaagaaggtgcccgtgctcctcca 213
||||||||| ||||| || | || ||||| || ||||||||| | || |||||| ||||
Sbjct: 33 caagagcgacctgctactgcaatcaaaccctgttcacaagaagattccggtgctcatcca 92
Query: 214 caacggcaagcctgt 228
|||||||||||||||
Sbjct: 93 caacggcaagcctgt 107
>gb|DR161647.1|DR161647 RTFE1_13_C07.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_13_C07_A029 3', mRNA sequence
Length = 516
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Minus
Query: 154 caagagcgagctgctcctcgagtccaacccggtgcacaagaaggtgcccgtgctcctcca 213
||||||||| ||||| || | || ||||| || ||||||||| | || |||||| ||||
Sbjct: 361 caagagcgacctgctactgcaatcaaaccctgttcacaagaagattccggtgctcatcca 302
Query: 214 caacggcaagcctgt 228
|||||||||||||||
Sbjct: 301 caacggcaagcctgt 287
>gb|CO158862.1|CO158862 FLD1_9_F07.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_9_F07_A029 5', mRNA sequence
Length = 817
Score = 52.0 bits (26), Expect = 5e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 179 aacccggtgcacaagaaggtgcccgtgctcctccacaacggcaagcctgt 228
||||| || ||||||||| | || |||||| |||||||||||||||||||
Sbjct: 139 aaccctgttcacaagaagattccggtgctcatccacaacggcaagcctgt 188
>gb|CX649777.1|CX649777 COLD1_41_A07.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_41_A07_A029 5', mRNA sequence
Length = 749
Score = 52.0 bits (26), Expect = 5e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 179 aacccggtgcacaagaaggtgcccgtgctcctccacaacggcaagcctgt 228
||||| || ||||||||| | || |||||| |||||||||||||||||||
Sbjct: 730 aaccctgttcacaagaagtttccggtgctcatccacaacggcaagcctgt 681
>gb|DR053024.1|DR053024 RTCA1_8_B11.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_8_B11_A029 5', mRNA sequence
Length = 784
Score = 52.0 bits (26), Expect = 5e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 179 aacccggtgcacaagaaggtgcccgtgctcctccacaacggcaagcctgt 228
||||| || ||||||||| | || |||||| |||||||||||||||||||
Sbjct: 169 aaccctgttcacaagaagattccggtgctcatccacaacggcaagcctgt 218
>gb|CF666144.1|CF666144 RTCNT1_21_D05.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_21_D05_A029 3', mRNA sequence
Length = 761
Score = 48.1 bits (24), Expect = 7e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 189 acaagaaggtgcccgtgctcctccacaacggcaagcctgt 228
|||||||| | || |||||| |||||||||||||||||||
Sbjct: 1 acaagaagattccggtgctcatccacaacggcaagcctgt 40
>gb|CO167625.1|CO167625 FLD1_70_D02.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_70_D02_A029 3', mRNA sequence
Length = 704
Score = 48.1 bits (24), Expect = 7e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 189 acaagaaggtgcccgtgctcctccacaacggcaagcctgt 228
|||||||| | || |||||| |||||||||||||||||||
Sbjct: 1 acaagaagattccggtgctcatccacaacggcaagcctgt 40
>gb|CF470657.1|CF470657 RTDS1_13_E08.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_13_E08_A015 5', mRNA sequence
Length = 734
Score = 46.1 bits (23), Expect = 0.003
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 158 agcgagctgctcctcgagtccaacccggtgcacaagaaggtgcccgtgctcctccacaac 217
||||||||||| || | || ||||| || ||||||||| | || |||||| ||||||||
Sbjct: 171 agcgagctgctactgcaatcaaaccctgttcacaagaagattccggtgctcatccacaac 230
Query: 218 ggcaagcctgt 228
|| ||||||||
Sbjct: 231 ggaaagcctgt 241
>gb|CX651236.1|CX651236 COLD1_51_C04.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_51_C04_A029 3', mRNA sequence
Length = 367
Score = 46.1 bits (23), Expect = 0.003
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 154 caagagcgagctgctcctcgagtccaacccggtgcacaagaaggtgcccgtgctcctcca 213
||||||||| ||||| || | || ||||| || ||||||||| | || |||||| ||||
Sbjct: 221 caagagcgacctgctactgcaatcaaaccctgttcacaagaagattccggtgctcatcca 162
Query: 214 caacggcaagcctgt 228
||||||| |||||||
Sbjct: 161 caacggcgagcctgt 147
>gb|CF665344.1|CF665344 RTCNT1_15_A03.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_15_A03_A029 5', mRNA sequence
Length = 616
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 203 gtgctcctccacaacggcaagcctgt 228
|||||| |||||||||||||||||||
Sbjct: 185 gtgctcatccacaacggcaagcctgt 210
>gb|CF667326.1|CF667326 RTCNT1_29_B05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_29_B05_A029 5', mRNA sequence
Length = 780
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 203 gtgctcctccacaacggcaagcctgt 228
|||||| |||||||||||||||||||
Sbjct: 212 gtgctcatccacaacggcaagcctgt 237
>gb|CF668277.1|CF668277 RTCNT1_35_B06.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_35_B06_A029 5', mRNA sequence
Length = 724
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 203 gtgctcctccacaacggcaagcctgt 228
|||||| |||||||||||||||||||
Sbjct: 712 gtgctcatccacaacggcaagcctgt 687
>gb|BX678272.1|BX678272 BX678272 RN Pinus pinaster cDNA clone RN69A02, mRNA sequence
Length = 558
Score = 44.1 bits (22), Expect = 0.012
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 155 aagagcgagctgctcctcgagtccaacccggtgcacaagaaggtgcccgtgctcctccac 214
|||||||||||||| || | || ||||| || ||||||||| | || |||||| | |||
Sbjct: 123 aagagcgagctgctgctgcaatcgaaccctgttcacaagaagattccggtgctcatacac 182
Query: 215 aacggcaagcctgt 228
||||| ||||||||
Sbjct: 183 aacgggaagcctgt 196
>gb|BX678400.1|BX678400 BX678400 RS Pinus pinaster cDNA clone RS08F03, mRNA sequence
Length = 631
Score = 44.1 bits (22), Expect = 0.012
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 155 aagagcgagctgctcctcgagtccaacccggtgcacaagaaggtgcccgtgctcctccac 214
|||||||||||||| || | || ||||| || ||||||||| | || |||||| | |||
Sbjct: 74 aagagcgagctgctgctgcaatcgaaccctgttcacaagaagattccggtgctcatacac 133
Query: 215 aacggcaagcctgt 228
||||| ||||||||
Sbjct: 134 aacgggaagcctgt 147
>gb|BX681323.1|BX681323 BX681323 RS Pinus pinaster cDNA clone RS57A08, mRNA sequence
Length = 489
Score = 44.1 bits (22), Expect = 0.012
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 155 aagagcgagctgctcctcgagtccaacccggtgcacaagaaggtgcccgtgctcctccac 214
|||||||||||||| || | || ||||| || ||||||||| | || |||||| | |||
Sbjct: 51 aagagcgagctgctgctgcaatcgaaccctgttcacaagaagattccggtgctcatacac 110
Query: 215 aacggcaagcctgt 228
||||| ||||||||
Sbjct: 111 aacgggaagcctgt 124
>gb|CO171833.1|CO171833 NDL1_25_A09.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_25_A09_A029 3', mRNA sequence
Length = 506
Score = 42.1 bits (21), Expect = 0.046
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 189 acaagaaggtgcccgtgctcctccacaacggcaagcctgtg 229
|||||| ||| || || ||| ||||||||||||||||||||
Sbjct: 299 acaagacggtacctgtcctcatccacaacggcaagcctgtg 259
>gb|DR012723.1|DR012723 HEAT1_14_D04.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_14_D04_A029 5', mRNA sequence
Length = 721
Score = 42.1 bits (21), Expect = 0.046
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 204 tgctcctccacaacggcaagcctgt 228
||||| |||||||||||||||||||
Sbjct: 703 tgctcatccacaacggcaagcctgt 679
>gb|DR742686.1|DR742686 RTCU1_5_G10.g2_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_5_G10_A029 5', mRNA sequence
Length = 307
Score = 42.1 bits (21), Expect = 0.046
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 188 cacaagaaggtgcccgtgctcctccacaacggcaagcctgt 228
||||||||||| ||||| ||| ||||||| | |||||||||
Sbjct: 188 cacaagaaggtacccgtactcatccacaatgacaagcctgt 228
>gb|CO196998.1|CO196998 GEO1_3_E09.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_3_E09_A029 3', mRNA sequence
Length = 519
Score = 40.1 bits (20), Expect = 0.18
Identities = 83/104 (79%)
Strand = Plus / Minus
Query: 155 aagagcgagctgctcctcgagtccaacccggtgcacaagaaggtgcccgtgctcctccac 214
|||||||||||||| || | || ||||| || ||||||||| | || |||||| |||||
Sbjct: 339 aagagcgagctgctgctgaaatcgaaccctgtccacaagaagatacctgtgctcatccac 280
Query: 215 aacggcaagcctgtgtgcgagtcgcagatcatcgtgcagtacat 258
|| || ||||| || || ||||| ||| || |||||||||||
Sbjct: 279 aatggaaagccagtttgtgagtccacgattattgtgcagtacat 236
>gb|CX650204.1|CX650204 COLD1_44_D11.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_44_D11_A029 3', mRNA sequence
Length = 829
Score = 40.1 bits (20), Expect = 0.18
Identities = 83/104 (79%)
Strand = Plus / Minus
Query: 155 aagagcgagctgctcctcgagtccaacccggtgcacaagaaggtgcccgtgctcctccac 214
|||||||||||||| || | || ||||| || ||||||||| | || |||||| |||||
Sbjct: 724 aagagcgagctgctgctgaaatcgaaccctgtccacaagaagatacctgtgctcatccac 665
Query: 215 aacggcaagcctgtgtgcgagtcgcagatcatcgtgcagtacat 258
|| || ||||| || || ||||| ||| || |||||||||||
Sbjct: 664 aatggaaagccagtttgtgagtccacgattattgtgcagtacat 621
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 112,276
Number of Sequences: 355925
Number of extensions: 112276
Number of successful extensions: 30869
Number of sequences better than 0.5: 44
Number of HSP's better than 0.5 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30823
Number of HSP's gapped (non-prelim): 46
length of query: 1069
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1050
effective length of database: 210,514,662
effective search space: 221040395100
effective search space used: 221040395100
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)