BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3829479.2.1
(1245 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX645838.1|CX645838 COLD1_5_D01.g1_A029 Root cold Pinus ... 74 2e-011
gb|DR177222.1|DR177222 RTMNUT1_3_H10.g1_A029 Roots minus mi... 74 2e-011
gb|U90346.1|PRU90346 Pinus radiata putative MADS box transc... 74 2e-011
gb|AW010611.1|AW010611 ST08G08 Pine TriplEx shoot tip libra... 70 2e-010
gb|BM134188.1|BM134188 NXLV_017_H01_F NXLV (Nsf Xylem Late ... 68 9e-010
gb|AW010398.1|AW010398 ST06D02 Pine TriplEx shoot tip libra... 66 4e-009
gb|BQ290846.1|BQ290846 NXRV050_D03_F NXRV (Nsf Xylem Root w... 66 4e-009
gb|BQ654531.1|BQ654531 NXRV081_H04_F NXRV (Nsf Xylem Root w... 66 4e-009
gb|CF386447.1|CF386447 RTDR1_14_B10.g1_A015 Loblolly pine r... 66 4e-009
gb|CO361066.1|CO361066 NDL2_2_B04.g1_A029 Needles control 2... 66 4e-009
gb|U76726.1|PRU76726 Pinus radiata MADS-box protein (PrMADS... 64 1e-008
gb|CF394057.1|CF394057 RTDS2_3_D04.b1_A021 Drought-stressed... 62 6e-008
gb|CO200411.1|CO200411 GEO2_7_G03.b1_A032 Root gravitropism... 62 6e-008
gb|CO200495.1|CO200495 GEO2_7_G03.g1_A032 Root gravitropism... 62 6e-008
gb|AW290406.1|AW290406 NXNV019H03F Nsf Xylem Normal wood Ve... 54 1e-005
gb|BG318835.1|BG318835 NXPV_020_D12_F NXPV (Nsf Xylem Plani... 54 1e-005
gb|BQ696809.1|BQ696809 NXPV_045_E02_F NXPV (Nsf Xylem Plani... 54 1e-005
gb|CD027064.1|CD027064 NXNV019H03 Nsf Xylem Normal wood Ver... 54 1e-005
gb|CF668263.1|CF668263 RTCNT1_35_A03.g1_A029 Root control P... 54 1e-005
gb|CO163263.1|CO163263 FLD1_40_B04.g1_A029 Root flooded Pin... 54 1e-005
gb|CO175129.1|CO175129 NDL1_48_D06.g1_A029 Needles control ... 54 1e-005
gb|CO201105.1|CO201105 RTCNT2_3_D12.g1_A029 Root control 2 ... 54 1e-005
gb|CO364847.1|CO364847 RTK1_22_D10.b1_A029 Roots minus pota... 54 1e-005
gb|CO364965.1|CO364965 RTK1_22_G09.g1_A029 Roots minus pota... 54 1e-005
gb|CV031753.1|CV031753 RTNACL1_3_B05.g1_A029 Roots plus add... 54 1e-005
gb|CV033251.1|CV033251 RTNACL1_33_G03.b1_A029 Roots plus ad... 54 1e-005
gb|CX713480.1|CX713480 RTPQ1_9_E04.g1_A032 Roots treated wi... 54 1e-005
gb|CX713558.1|CX713558 RTPQ1_10_E02.g1_A032 Roots treated w... 54 1e-005
gb|DR058437.1|DR058437 RTNIT1_11_F11.g1_A029 Roots minus ni... 54 1e-005
gb|DR079072.1|DR079072 RTFEPL1_8_G11.g1_A029 Roots plus add... 54 1e-005
gb|DR090622.1|DR090622 RTAL1_16_G11.b1_A029 Roots plus adde... 54 1e-005
gb|DR090702.1|DR090702 RTAL1_16_G11.g1_A029 Roots plus adde... 54 1e-005
gb|DR178004.1|DR178004 RTMNUT1_8_E05.g1_A029 Roots minus mi... 54 1e-005
gb|AA556486.1|AA556486 341 Loblolly pine C Pinus taeda cDNA... 48 9e-004
gb|U90348.1|PRU90348 Pinus radiata putative MADS box transc... 48 9e-004
gb|CF476374.1|CF476374 RTWW2_22_E12.g1_A021 Well-watered lo... 46 0.003
gb|CF670172.1|CF670172 RTCNT1_48_B11.g1_A029 Root control P... 46 0.003
gb|CO169756.1|CO169756 NDL1_9_A05.g1_A029 Needles control P... 46 0.003
gb|CX645252.1|CX645252 COLD1_1_H11.b1_A029 Root cold Pinus ... 46 0.003
gb|DR051726.1|DR051726 RTBOR1_32_A11.b1_A029 Roots plus add... 46 0.003
gb|DR051801.1|DR051801 RTBOR1_32_A11.g1_A029 Roots plus add... 46 0.003
gb|DR109660.1|DR109660 RTS1_3_G12.g1_A029 Roots minus sulfu... 46 0.003
gb|DR168055.1|DR168055 RTPHOS1_22_H02.g1_A029 Roots minus p... 46 0.003
gb|DR167777.1|DR167777 RTPHOS1_21_A12.b1_A029 Roots minus p... 44 0.014
gb|BQ290905.1|BQ290905 NXRV051_B10_F NXRV (Nsf Xylem Root w... 42 0.054
gb|CO157702.1|CO157702 FLD1_1_B06.g1_A029 Root flooded Pinu... 42 0.054
gb|CO170901.1|CO170901 NDL1_17_E10.g1_A029 Needles control ... 42 0.054
gb|CO197079.1|CO197079 GEO1_3_F06.g1_A029 Root gravitropism... 42 0.054
gb|CO367965.1|CO367965 RTK1_37_F12.g1_A029 Roots minus pota... 42 0.054
gb|CX650850.1|CX650850 COLD1_48_B09.g1_A029 Root cold Pinus... 42 0.054
gb|DR012819.1|DR012819 HEAT1_15_E08.b1_A029 Root at 37 C fo... 42 0.054
gb|DR072089.1|DR072089 RTDK1_24_B10.b1_A029 Roots, dark Pin... 42 0.054
gb|DR072321.1|DR072321 RTDK1_25_B07.g1_A029 Roots, dark Pin... 42 0.054
gb|DR178023.1|DR178023 RTMNUT1_8_F12.g1_A029 Roots minus mi... 42 0.054
gb|U90345.1|PRU90345 Pinus radiata putative MADS box transc... 42 0.054
gb|BE451798.1|BE451798 NXCI_002_D03_F NXCI (Nsf Xylem Compr... 40 0.21
gb|BF220652.1|BF220652 NXCI_151_A10_F NXCI (Nsf Xylem Compr... 40 0.21
gb|BF517018.1|BF517018 NXSI_008_C03_F NXSI (Nsf Xylem Side ... 40 0.21
gb|CO198507.1|CO198507 GEO1_14_E10.b1_A029 Root gravitropis... 40 0.21
gb|U90349.1|PRU90349 Pinus radiata putative MADS box transc... 40 0.21
>gb|CX645838.1|CX645838 COLD1_5_D01.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_5_D01_A029 5', mRNA sequence
Length = 705
Score = 73.8 bits (37), Expect = 2e-011
Identities = 49/53 (92%)
Strand = Plus / Minus
Query: 883 tcgcagagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgctt 935
||||||||||||||||||||||| || ||||| ||||| ||||||||||||||
Sbjct: 285 tcgcagagcaccgagagctcgtaagctttcttcagcagcccgttgcggcgctt 233
>gb|DR177222.1|DR177222 RTMNUT1_3_H10.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_3_H10_A029 5', mRNA sequence
Length = 770
Score = 73.8 bits (37), Expect = 2e-011
Identities = 49/53 (92%)
Strand = Plus / Minus
Query: 883 tcgcagagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgctt 935
||||||||||||||||||||||| || ||||| ||||| ||||||||||||||
Sbjct: 298 tcgcagagcaccgagagctcgtaagctttcttcagcagcccgttgcggcgctt 246
>gb|U90346.1|PRU90346 Pinus radiata putative MADS box transcription factor PrMADS5 mRNA,
complete cds
Length = 1301
Score = 73.8 bits (37), Expect = 2e-011
Identities = 49/53 (92%)
Strand = Plus / Minus
Query: 883 tcgcagagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgctt 935
||||||||||||||||||||||| || ||||| ||||| ||||||||||||||
Sbjct: 287 tcgcagagcaccgagagctcgtaagctttcttcagcagcccgttgcggcgctt 235
>gb|AW010611.1|AW010611 ST08G08 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST08G08, mRNA sequence
Length = 927
Score = 69.9 bits (35), Expect = 2e-010
Identities = 47/51 (92%)
Strand = Plus / Minus
Query: 883 tcgcagagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgc 933
||||||||||||||||||||||| || ||||| ||||| ||||||||||||
Sbjct: 219 tcgcagagcaccgagagctcgtaagctttcttcagcagcccgttgcggcgc 169
>gb|BM134188.1|BM134188 NXLV_017_H01_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_017_H01 5' similar to Arabidopsis thaliana
sequence At2g45660 MADS-box protein (AGL20) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 508
Score = 67.9 bits (34), Expect = 9e-010
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 883 tcgcagagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgctt 935
|||||||||||||||||| |||| || ||||| ||||| ||||||||||||||
Sbjct: 393 tcgcagagcaccgagagcncgtaagctttcttcagcagcccgttgcggcgctt 341
>gb|AW010398.1|AW010398 ST06D02 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST06D02, mRNA sequence
Length = 647
Score = 65.9 bits (33), Expect = 4e-009
Identities = 60/69 (86%)
Strand = Plus / Minus
Query: 868 agcgcgacctcggcgtcgcagagcaccgagagctcgtacgccttcttgagcaggccgttg 927
||||| || ||||| ||||| ||||| || ||||||||||||||||| ||||| |||||
Sbjct: 157 agcgccacttcggcatcgcacagcactgatagctcgtacgccttcttcagcagtccgttc 98
Query: 928 cggcgcttg 936
|||||||||
Sbjct: 97 cggcgcttg 89
>gb|BQ290846.1|BQ290846 NXRV050_D03_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV050_D03 5' similar to Arabidopsis thaliana
sequence At5g15800 transcription factor (AGL2) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 546
Score = 65.9 bits (33), Expect = 4e-009
Identities = 60/69 (86%)
Strand = Plus / Minus
Query: 868 agcgcgacctcggcgtcgcagagcaccgagagctcgtacgccttcttgagcaggccgttg 927
||||| || ||||| ||||| ||||| || ||||||||||||||||| ||||| |||||
Sbjct: 218 agcgccacttcggcatcgcacagcactgatagctcgtacgccttcttcagcagtccgttc 159
Query: 928 cggcgcttg 936
|||||||||
Sbjct: 158 cggcgcttg 150
>gb|BQ654531.1|BQ654531 NXRV081_H04_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV081_H04 5' similar to Arabidopsis thaliana
sequence At5g15800 transcription factor (AGL2) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 436
Score = 65.9 bits (33), Expect = 4e-009
Identities = 60/69 (86%)
Strand = Plus / Minus
Query: 868 agcgcgacctcggcgtcgcagagcaccgagagctcgtacgccttcttgagcaggccgttg 927
||||| || ||||| ||||| ||||| || ||||||||||||||||| ||||| |||||
Sbjct: 195 agcgccacttcggcatcgcacagcactgatagctcgtacgccttcttcagcagtccgttc 136
Query: 928 cggcgcttg 936
|||||||||
Sbjct: 135 cggcgcttg 127
>gb|CF386447.1|CF386447 RTDR1_14_B10.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_14_B10_A015 5', mRNA
sequence
Length = 821
Score = 65.9 bits (33), Expect = 4e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 883 tcgcagagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgctt 935
|||||||||||||||||||| || || ||||| ||||| ||||||||||||||
Sbjct: 350 tcgcagagcaccgagagctcctaagctttcttcagcagcccgttgcggcgctt 298
>gb|CO361066.1|CO361066 NDL2_2_B04.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_2_B04_A029 5', mRNA sequence
Length = 840
Score = 65.9 bits (33), Expect = 4e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 883 tcgcagagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgctt 935
|||||||||||||||||||| || || ||||| ||||| ||||||||||||||
Sbjct: 266 tcgcagagcaccgagagctcctaagctttcttcagcagcccgttgcggcgctt 214
>gb|U76726.1|PRU76726 Pinus radiata MADS-box protein (PrMADS3) mRNA, complete cds
Length = 1130
Score = 63.9 bits (32), Expect = 1e-008
Identities = 59/68 (86%)
Strand = Plus / Minus
Query: 868 agcgcgacctcggcgtcgcagagcaccgagagctcgtacgccttcttgagcaggccgttg 927
||||| || ||||| ||||| ||||| || ||||||||||||||||| ||||| |||||
Sbjct: 134 agcgccacttcggcatcgcacagcactgatagctcgtacgccttcttcagcagtccgttc 75
Query: 928 cggcgctt 935
||||||||
Sbjct: 74 cggcgctt 67
>gb|CF394057.1|CF394057 RTDS2_3_D04.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_3_D04_A021 3', mRNA sequence
Length = 611
Score = 61.9 bits (31), Expect = 6e-008
Identities = 85/103 (82%)
Strand = Plus / Plus
Query: 850 cggctggagaagacgacgagcgcgacctcggcgtcgcagagcaccgagagctcgtacgcc 909
||||||||||| || | |||||| || || || ||||| ||||| || |||||||| ||
Sbjct: 326 cggctggagaaaacaatgagcgctacatctgcatcgcacagcactgaaagctcgtaggct 385
Query: 910 ttcttgagcaggccgttgcggcgcttgcagaaggtcacctgcc 952
||||| | ||| ||| |||||||||||||||||||||||||
Sbjct: 386 ttcttcatcagaccgcctcggcgcttgcagaaggtcacctgcc 428
>gb|CO200411.1|CO200411 GEO2_7_G03.b1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_7_G03_A032 3', mRNA sequence
Length = 860
Score = 61.9 bits (31), Expect = 6e-008
Identities = 85/103 (82%)
Strand = Plus / Minus
Query: 850 cggctggagaagacgacgagcgcgacctcggcgtcgcagagcaccgagagctcgtacgcc 909
||||||||||| || | |||||| || || || ||||| ||||| || |||||||| ||
Sbjct: 315 cggctggagaaaacaatgagcgctacatctgcatcgcacagcactgaaagctcgtaggct 256
Query: 910 ttcttgagcaggccgttgcggcgcttgcagaaggtcacctgcc 952
||||| | ||| ||| |||||||||||||||||||||||||
Sbjct: 255 ttcttcatcagaccgcctcggcgcttgcagaaggtcacctgcc 213
>gb|CO200495.1|CO200495 GEO2_7_G03.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_7_G03_A032 5', mRNA sequence
Length = 820
Score = 61.9 bits (31), Expect = 6e-008
Identities = 85/103 (82%)
Strand = Plus / Minus
Query: 850 cggctggagaagacgacgagcgcgacctcggcgtcgcagagcaccgagagctcgtacgcc 909
||||||||||| || | |||||| || || || ||||| ||||| || |||||||| ||
Sbjct: 558 cggctggagaaaacaatgagcgctacatctgcatcgcacagcactgaaagctcgtaggct 499
Query: 910 ttcttgagcaggccgttgcggcgcttgcagaaggtcacctgcc 952
||||| | ||| ||| |||||||||||||||||||||||||
Sbjct: 498 ttcttcatcagaccgcctcggcgcttgcagaaggtcacctgcc 456
>gb|AW290406.1|AW290406 NXNV019H03F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV019H03 5', mRNA sequence
Length = 464
Score = 54.0 bits (27), Expect = 1e-005
Identities = 78/95 (82%)
Strand = Plus / Minus
Query: 877 tcggcgtcgcagagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttg 936
||||| |||||||||||||| |||||||| || |||||||||| ||||| | ||||||
Sbjct: 311 tcggcatcgcagagcaccgacagctcgtaagctttcttgagcaaaccgttcctgcgctta 252
Query: 937 cagaaggtcacctgccggctcgtcgtgttctcgat 971
| || || ||||| | ||| || |||||||||||
Sbjct: 251 gaaaaagtaacctgtctgctagtggtgttctcgat 217
>gb|BG318835.1|BG318835 NXPV_020_D12_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_020_D12 5' similar to Arabidopsis
thaliana sequence At2g45660 MADS-box protein (AGL20) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 527
Score = 54.0 bits (27), Expect = 1e-005
Identities = 78/95 (82%)
Strand = Plus / Minus
Query: 877 tcggcgtcgcagagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttg 936
||||| |||||||||||||| |||||||| || |||||||||| ||||| | ||||||
Sbjct: 302 tcggcatcgcagagcaccgacagctcgtaagctttcttgagcaaaccgttcctgcgctta 243
Query: 937 cagaaggtcacctgccggctcgtcgtgttctcgat 971
| || || ||||| | ||| || |||||||||||
Sbjct: 242 gaaaaagtaacctgtctgctagtggtgttctcgat 208
>gb|BQ696809.1|BQ696809 NXPV_045_E02_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_045_E02 5' similar to Arabidopsis
thaliana sequence At2g45660 MADS-box protein (AGL20) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 540
Score = 54.0 bits (27), Expect = 1e-005
Identities = 78/95 (82%)
Strand = Plus / Minus
Query: 877 tcggcgtcgcagagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttg 936
||||| |||||||||||||| |||||||| || |||||||||| ||||| | ||||||
Sbjct: 302 tcggcatcgcagagcaccgacagctcgtaagctttcttgagcaaaccgttcctgcgctta 243
Query: 937 cagaaggtcacctgccggctcgtcgtgttctcgat 971
| || || ||||| | ||| || |||||||||||
Sbjct: 242 gaaaaagtaacctgtctgctagtggtgttctcgat 208
>gb|CD027064.1|CD027064 NXNV019H03 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV019H03 5' similar to Arabidopsis thaliana sequence
At2g45660 MADS-box protein (AGL20) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 464
Score = 54.0 bits (27), Expect = 1e-005
Identities = 78/95 (82%)
Strand = Plus / Minus
Query: 877 tcggcgtcgcagagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttg 936
||||| |||||||||||||| |||||||| || |||||||||| ||||| | ||||||
Sbjct: 311 tcggcatcgcagagcaccgacagctcgtaagctttcttgagcaaaccgttcctgcgctta 252
Query: 937 cagaaggtcacctgccggctcgtcgtgttctcgat 971
| || || ||||| | ||| || |||||||||||
Sbjct: 251 gaaaaagtaacctgtctgctagtggtgttctcgat 217
>gb|CF668263.1|CF668263 RTCNT1_35_A03.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_35_A03_A029 5', mRNA sequence
Length = 764
Score = 54.0 bits (27), Expect = 1e-005
Identities = 84/103 (81%)
Strand = Plus / Minus
Query: 850 cggctggagaagacgacgagcgcgacctcggcgtcgcagagcaccgagagctcgtacgcc 909
||||||||||| || | |||||| || || || ||||| ||||| || |||||||| ||
Sbjct: 537 cggctggagaaaacaatgagcgctacatctgcatcgcacagcactgaaagctcgtaggct 478
Query: 910 ttcttgagcaggccgttgcggcgcttgcagaaggtcacctgcc 952
|| || | ||| ||| |||||||||||||||||||||||||
Sbjct: 477 tttttcatcagaccgcctcggcgcttgcagaaggtcacctgcc 435
>gb|CO163263.1|CO163263 FLD1_40_B04.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_40_B04_A029 5', mRNA sequence
Length = 841
Score = 54.0 bits (27), Expect = 1e-005
Identities = 78/95 (82%)
Strand = Plus / Minus
Query: 877 tcggcgtcgcagagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttg 936
||||| |||||||||||||| |||||||| || |||||||||| ||||| | ||||||
Sbjct: 168 tcggcatcgcagagcaccgacagctcgtaagctttcttgagcaaaccgttcctgcgctta 109
Query: 937 cagaaggtcacctgccggctcgtcgtgttctcgat 971
| || || ||||| | ||| || |||||||||||
Sbjct: 108 gaaaaagtaacctgtctgctagtggtgttctcgat 74
>gb|CO175129.1|CO175129 NDL1_48_D06.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_48_D06_A029 5', mRNA sequence
Length = 804
Score = 54.0 bits (27), Expect = 1e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 877 tcggcgtcgcagagcaccgagagctcgtacgccttcttgagca 919
||||| |||||||||||||| |||||||| || ||||||||||
Sbjct: 84 tcggcatcgcagagcaccgacagctcgtaagctttcttgagca 42
>gb|CO201105.1|CO201105 RTCNT2_3_D12.g1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_3_D12_A029 5', mRNA sequence
Length = 758
Score = 54.0 bits (27), Expect = 1e-005
Identities = 84/103 (81%)
Strand = Plus / Minus
Query: 850 cggctggagaagacgacgagcgcgacctcggcgtcgcagagcaccgagagctcgtacgcc 909
||||||||||| || | |||||| || || || ||||| ||||| || |||||||| ||
Sbjct: 344 cggctggagaaaacaatgagcgctacatctgcatcgcacagcactgaaagctcgtaggct 285
Query: 910 ttcttgagcaggccgttgcggcgcttgcagaaggtcacctgcc 952
|| || | ||| ||| |||||||||||||||||||||||||
Sbjct: 284 tttttcatcagaccgcctcggcgcttgcagaaggtcacctgcc 242
>gb|CO364847.1|CO364847 RTK1_22_D10.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_22_D10_A029 3', mRNA sequence
Length = 867
Score = 54.0 bits (27), Expect = 1e-005
Identities = 84/103 (81%)
Strand = Plus / Plus
Query: 850 cggctggagaagacgacgagcgcgacctcggcgtcgcagagcaccgagagctcgtacgcc 909
||||||||||| || | |||||| || || || ||||| ||||| || |||||||| ||
Sbjct: 496 cggctggagaaaacaatgagcgctacatctgcatcgcacagcactgaaagctcgtaggct 555
Query: 910 ttcttgagcaggccgttgcggcgcttgcagaaggtcacctgcc 952
|| || | ||| ||| |||||||||||||||||||||||||
Sbjct: 556 tttttcatcagaccgcctcggcgcttgcagaaggtcacctgcc 598
>gb|CO364965.1|CO364965 RTK1_22_G09.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_22_G09_A029 5', mRNA sequence
Length = 833
Score = 54.0 bits (27), Expect = 1e-005
Identities = 78/95 (82%)
Strand = Plus / Minus
Query: 877 tcggcgtcgcagagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttg 936
||||| |||||||||||||| |||||||| || |||||||||| ||||| | ||||||
Sbjct: 301 tcggcatcgcagagcaccgacagctcgtaagctttcttgagcaaaccgttcctgcgctta 242
Query: 937 cagaaggtcacctgccggctcgtcgtgttctcgat 971
| || || ||||| | ||| || |||||||||||
Sbjct: 241 gaaaaagtaacctgtctgctagtggtgttctcgat 207
>gb|CV031753.1|CV031753 RTNACL1_3_B05.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_3_B05_A029 5', mRNA sequence
Length = 851
Score = 54.0 bits (27), Expect = 1e-005
Identities = 84/103 (81%)
Strand = Plus / Minus
Query: 850 cggctggagaagacgacgagcgcgacctcggcgtcgcagagcaccgagagctcgtacgcc 909
||||||||||| || | |||||| || || || ||||| ||||| || |||||||| ||
Sbjct: 330 cggctggagaaaacaatgagcgctacatctgcatcgcacagcactgaaagctcgtaggct 271
Query: 910 ttcttgagcaggccgttgcggcgcttgcagaaggtcacctgcc 952
|| || | ||| ||| |||||||||||||||||||||||||
Sbjct: 270 tttttcatcagaccgcctcggcgcttgcagaaggtcacctgcc 228
>gb|CV033251.1|CV033251 RTNACL1_33_G03.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_33_G03_A029 3', mRNA sequence
Length = 839
Score = 54.0 bits (27), Expect = 1e-005
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 850 cggctggagaagacgacgagcgcgacctcggcgtcgcagagcaccgagagctcgtacgcc 909
||||| |||||||||| || |||||| || |||||||| ||||| || ||||| |||||
Sbjct: 104 cggcttgagaagacgatgaccgcgacttctgcgtcgcanagcacagacagctcatacgct 45
Query: 910 ttcttgagcaggccgttgcggcgcttgcagaaggtcac 947
||||| | ||| ||||| || ||| || |||| |||||
Sbjct: 44 ttcttcaacagaccgtttcgacgcgtggagaaagtcac 7
>gb|CX713480.1|CX713480 RTPQ1_9_E04.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_9_E04_A032 5', mRNA sequence
Length = 437
Score = 54.0 bits (27), Expect = 1e-005
Identities = 78/95 (82%)
Strand = Plus / Minus
Query: 877 tcggcgtcgcagagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttg 936
||||| |||||||||||||| |||||||| || |||||||||| ||||| | ||||||
Sbjct: 193 tcggcatcgcagagcaccgacagctcgtaagctttcttgagcaaaccgttcctgcgctta 134
Query: 937 cagaaggtcacctgccggctcgtcgtgttctcgat 971
| || || ||||| | ||| || |||||||||||
Sbjct: 133 gaaaaagtaacctgtctgctagtggtgttctcgat 99
>gb|CX713558.1|CX713558 RTPQ1_10_E02.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_10_E02_A032 5', mRNA sequence
Length = 513
Score = 54.0 bits (27), Expect = 1e-005
Identities = 78/95 (82%)
Strand = Plus / Minus
Query: 877 tcggcgtcgcagagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttg 936
||||| |||||||||||||| |||||||| || |||||||||| ||||| | ||||||
Sbjct: 216 tcggcatcgcagagcaccgacagctcgtaagctttcttgagcaaaccgttcctgcgctta 157
Query: 937 cagaaggtcacctgccggctcgtcgtgttctcgat 971
| || || ||||| | ||| || |||||||||||
Sbjct: 156 gaaaaagtaacctgtctgctagtggtgttctcgat 122
>gb|DR058437.1|DR058437 RTNIT1_11_F11.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_11_F11_A029 5', mRNA sequence
Length = 795
Score = 54.0 bits (27), Expect = 1e-005
Identities = 84/103 (81%)
Strand = Plus / Minus
Query: 850 cggctggagaagacgacgagcgcgacctcggcgtcgcagagcaccgagagctcgtacgcc 909
||||||||||| || | |||||| || || || ||||| ||||| || |||||||| ||
Sbjct: 352 cggctggagaaaacaatgagcgctacatctgcatcgcacagcactgaaagctcgtaggct 293
Query: 910 ttcttgagcaggccgttgcggcgcttgcagaaggtcacctgcc 952
|| || | ||| ||| |||||||||||||||||||||||||
Sbjct: 292 tttttcatcagaccgcctcggcgcttgcagaaggtcacctgcc 250
>gb|DR079072.1|DR079072 RTFEPL1_8_G11.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_8_G11_A029 5', mRNA sequence
Length = 829
Score = 54.0 bits (27), Expect = 1e-005
Identities = 78/95 (82%)
Strand = Plus / Minus
Query: 877 tcggcgtcgcagagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttg 936
||||| |||||||||||||| |||||||| || |||||||||| ||||| | ||||||
Sbjct: 270 tcggcatcgcagagcaccgacagctcgtaagctttcttgagcaaaccgttcctgcgctta 211
Query: 937 cagaaggtcacctgccggctcgtcgtgttctcgat 971
| || || ||||| | ||| || |||||||||||
Sbjct: 210 gaaaaagtaacctgtctgctagtggtgttctcgat 176
>gb|DR090622.1|DR090622 RTAL1_16_G11.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_16_G11_A029 3', mRNA sequence
Length = 859
Score = 54.0 bits (27), Expect = 1e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 877 tcggcgtcgcagagcaccgagagctcgtacgccttcttgagca 919
||||| |||||||||||||| |||||||| || ||||||||||
Sbjct: 81 tcggcatcgcagagcaccgacagctcgtaagctttcttgagca 39
>gb|DR090702.1|DR090702 RTAL1_16_G11.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_16_G11_A029 5', mRNA sequence
Length = 808
Score = 54.0 bits (27), Expect = 1e-005
Identities = 78/95 (82%)
Strand = Plus / Minus
Query: 877 tcggcgtcgcagagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttg 936
||||| |||||||||||||| |||||||| || |||||||||| ||||| | ||||||
Sbjct: 373 tcggcatcgcagagcaccgacagctcgtaagctttcttgagcaaaccgttcctgcgctta 314
Query: 937 cagaaggtcacctgccggctcgtcgtgttctcgat 971
| || || ||||| | ||| || |||||||||||
Sbjct: 313 gaaaaagtaacctgtctgctagtggtgttctcgat 279
>gb|DR178004.1|DR178004 RTMNUT1_8_E05.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_8_E05_A029 5', mRNA sequence
Length = 779
Score = 54.0 bits (27), Expect = 1e-005
Identities = 84/103 (81%)
Strand = Plus / Minus
Query: 850 cggctggagaagacgacgagcgcgacctcggcgtcgcagagcaccgagagctcgtacgcc 909
||||||||||| || | |||||| || || || ||||| ||||| || |||||||| ||
Sbjct: 416 cggctggagaaaacaatgagcgctacatctgcatcgcacagcactgaaagctcgtaggct 357
Query: 910 ttcttgagcaggccgttgcggcgcttgcagaaggtcacctgcc 952
|| || | ||| ||| |||||||||||||||||||||||||
Sbjct: 356 tttttcatcagaccgcctcggcgcttgcagaaggtcacctgcc 314
>gb|AA556486.1|AA556486 341 Loblolly pine C Pinus taeda cDNA clone 4C5B, mRNA sequence
Length = 656
Score = 48.1 bits (24), Expect = 9e-004
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 868 agcgcgacctcggcgtcgcagagcaccgagagctcgtacgccttcttgagcaggccgtt 926
||||| || ||||| |||||||||||||| || ||||| || ||||| ||||| |||||
Sbjct: 256 agcgcnacttcggcatcgcagagcaccgacagttcgtaagctttcttcagcagtccgtt 198
>gb|U90348.1|PRU90348 Pinus radiata putative MADS box transcription factor PrMADS7 mRNA,
complete cds
Length = 866
Score = 48.1 bits (24), Expect = 9e-004
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 889 agcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcagaaggtcacc 948
||||||||||||||||| || ||||| ||||| ||||| | |||||| || || || |||
Sbjct: 224 agcaccgagagctcgtaagctttcttcagcagaccgttcctgcgcttacaaaaagtaacc 165
Query: 949 tgcc 952
||||
Sbjct: 164 tgcc 161
>gb|CF476374.1|CF476374 RTWW2_22_E12.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_22_E12_A021 5', mRNA sequence
Length = 733
Score = 46.1 bits (23), Expect = 0.003
Identities = 74/91 (81%)
Strand = Plus / Minus
Query: 862 acgacgagcgcgacctcggcgtcgcagagcaccgagagctcgtacgccttcttgagcagg 921
|||| |||||| ||||| || ||||| ||||| || ||||| || || ||||| | |||
Sbjct: 547 acgatgagcgccacctctgcatcgcacagcactgaaagctcataggctttcttcatcaga 488
Query: 922 ccgttgcggcgcttgcagaaggtcacctgcc 952
||| || ||||||||||||||||||||||
Sbjct: 487 ccgcctcgccgcttgcagaaggtcacctgcc 457
>gb|CF670172.1|CF670172 RTCNT1_48_B11.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_48_B11_A029 5', mRNA sequence
Length = 788
Score = 46.1 bits (23), Expect = 0.003
Identities = 74/91 (81%)
Strand = Plus / Minus
Query: 862 acgacgagcgcgacctcggcgtcgcagagcaccgagagctcgtacgccttcttgagcagg 921
|||| |||||| ||||| || ||||| ||||| || ||||| || || ||||| | |||
Sbjct: 183 acgatgagcgccacctctgcatcgcacagcactgaaagctcataggctttcttcatcaga 124
Query: 922 ccgttgcggcgcttgcagaaggtcacctgcc 952
||| || ||||||||||||||||||||||
Sbjct: 123 ccgcctcgccgcttgcagaaggtcacctgcc 93
>gb|CO169756.1|CO169756 NDL1_9_A05.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_9_A05_A029 5', mRNA sequence
Length = 753
Score = 46.1 bits (23), Expect = 0.003
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 868 agcgcgacctcggcgtcgcagagcaccgagagctcgtacgccttcttgagcaggccgtt 926
||||| || ||||| |||||||||||||| || ||||| || ||||| ||||| |||||
Sbjct: 406 agcgctacttcggcatcgcagagcaccgacagttcgtaagctttcttcagcagtccgtt 348
>gb|CX645252.1|CX645252 COLD1_1_H11.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_1_H11_A029 3', mRNA sequence
Length = 793
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 930 gcgcttgcagaaggtcacctgcc 952
|||||||||||||||||||||||
Sbjct: 543 gcgcttgcagaaggtcacctgcc 565
>gb|DR051726.1|DR051726 RTBOR1_32_A11.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_32_A11_A029 3', mRNA sequence
Length = 792
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 930 gcgcttgcagaaggtcacctgcc 952
|||||||||||||||||||||||
Sbjct: 551 gcgcttgcagaaggtcacctgcc 573
>gb|DR051801.1|DR051801 RTBOR1_32_A11.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_32_A11_A029 5', mRNA sequence
Length = 822
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 930 gcgcttgcagaaggtcacctgcc 952
|||||||||||||||||||||||
Sbjct: 707 gcgcttgcagaaggtcacctgcc 729
>gb|DR109660.1|DR109660 RTS1_3_G12.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_3_G12_A029 5', mRNA sequence
Length = 826
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 930 gcgcttgcagaaggtcacctgcc 952
|||||||||||||||||||||||
Sbjct: 257 gcgcttgcagaaggtcacctgcc 235
>gb|DR168055.1|DR168055 RTPHOS1_22_H02.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_22_H02_A029 5', mRNA sequence
Length = 662
Score = 46.1 bits (23), Expect = 0.003
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 868 agcgcgacctcggcgtcgcagagcaccgagagctcgtacgccttcttgagcaggccgtt 926
||||| || ||||| |||||||||||||| || ||||| || ||||| ||||| |||||
Sbjct: 180 agcgctacttcggcatcgcagagcaccgacagttcgtaagctttcttcagcagtccgtt 122
>gb|DR167777.1|DR167777 RTPHOS1_21_A12.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_21_A12_A029 3', mRNA sequence
Length = 628
Score = 44.1 bits (22), Expect = 0.014
Identities = 70/86 (81%)
Strand = Plus / Plus
Query: 904 tacgccttcttgagcaggccgttgcggcgcttgcagaaggtcacctgccggctcgtcgtg 963
||||||||||| || | ||||| || |||| |||||| ||||| |||| || || ||
Sbjct: 224 tacgccttcttcagtaatccgtttcgacgctagcagaaagtcactagccgacttgtagta 283
Query: 964 ttctcgatgcgcttgatctcgatctt 989
|||||||| ||||||||||| |||||
Sbjct: 284 ttctcgatccgcttgatctcaatctt 309
>gb|BQ290905.1|BQ290905 NXRV051_B10_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV051_B10 5' similar to Arabidopsis thaliana
sequence At4g11880 MADS-box protein AGL14 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 265
Score = 42.1 bits (21), Expect = 0.054
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 883 tcgcagagcaccgagagctcgtacgccttcttgagca 919
|||||||||||||| |||| ||| || ||||||||||
Sbjct: 209 tcgcagagcaccgacagcttgtaagctttcttgagca 173
>gb|CO157702.1|CO157702 FLD1_1_B06.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_1_B06_A029 5', mRNA sequence
Length = 703
Score = 42.1 bits (21), Expect = 0.054
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 883 tcgcagagcaccgagagctcgtacgccttcttgagca 919
||||| ||||||||||||||| | |||||||| ||||
Sbjct: 205 tcgcacagcaccgagagctcgaaagccttcttcagca 169
>gb|CO170901.1|CO170901 NDL1_17_E10.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_17_E10_A029 5', mRNA sequence
Length = 699
Score = 42.1 bits (21), Expect = 0.054
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 883 tcgcagagcaccgagagctcgtacgccttcttgagca 919
|||||||||||||| |||||||| || ||||| ||||
Sbjct: 265 tcgcagagcaccgacagctcgtaagctttcttcagca 229
>gb|CO197079.1|CO197079 GEO1_3_F06.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_3_F06_A029 5', mRNA sequence
Length = 692
Score = 42.1 bits (21), Expect = 0.054
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 883 tcgcagagcaccgagagctcgtacgccttcttgagca 919
|||||||||||||| |||||||| || ||||| ||||
Sbjct: 353 tcgcagagcaccgacagctcgtaagctttcttcagca 317
>gb|CO367965.1|CO367965 RTK1_37_F12.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_37_F12_A029 5', mRNA sequence
Length = 852
Score = 42.1 bits (21), Expect = 0.054
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 883 tcgcagagcaccgagagctcgtacgccttcttgagca 919
||||| ||||||||||||||| | |||||||| ||||
Sbjct: 263 tcgcacagcaccgagagctcgaaagccttcttcagca 227
>gb|CX650850.1|CX650850 COLD1_48_B09.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_48_B09_A029 5', mRNA sequence
Length = 814
Score = 42.1 bits (21), Expect = 0.054
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 883 tcgcagagcaccgagagctcgtacgccttcttgagca 919
|||||||||||||| |||||||| || ||||| ||||
Sbjct: 200 tcgcagagcaccgacagctcgtaagctttcttcagca 164
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 124,506
Number of Sequences: 355925
Number of extensions: 124506
Number of successful extensions: 31959
Number of sequences better than 0.5: 61
Number of HSP's better than 0.5 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31887
Number of HSP's gapped (non-prelim): 66
length of query: 1245
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1226
effective length of database: 210,514,662
effective search space: 258090975612
effective search space used: 258090975612
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)