BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3713091.2.1
(1013 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF474049.1|CF474049 RTWW2_18_B08.g1_A021 Well-watered lo... 52 5e-005
gb|DN445905.1|DN445905 EST941704 Sequencing ESTs from loblo... 52 5e-005
gb|DN457813.1|DN457813 EST953612 Sequencing ESTs from loblo... 52 5e-005
gb|DT625364.1|DT625364 EST1159639 Sequencing ESTs from lobl... 52 5e-005
gb|AW010234.1|AW010234 ST03F06 Pine TriplEx shoot tip libra... 46 0.003
gb|CF395690.1|CF395690 RTDS2_16_A02.g1_A021 Drought-stresse... 46 0.003
gb|CF470657.1|CF470657 RTDS1_13_E08.g1_A015 Drought-stresse... 46 0.003
gb|CF664978.1|CF664978 RTCNT1_13_C10.b1_A029 Root control P... 46 0.003
gb|CF665055.1|CF665055 RTCNT1_13_C10.g1_A029 Root control P... 46 0.003
gb|CF665536.1|CF665536 RTCNT1_16_D05.g1_A029 Root control P... 46 0.003
gb|CF666205.1|CF666205 RTCNT1_21_D05.g1_A029 Root control P... 46 0.003
gb|CF667732.1|CF667732 RTCNT1_32_E07.b1_A029 Root control P... 46 0.003
gb|CF667817.1|CF667817 RTCNT1_32_E07.g1_A029 Root control P... 46 0.003
gb|CF668197.1|CF668197 RTCNT1_35_B06.b1_A029 Root control P... 46 0.003
gb|CF668641.1|CF668641 RTCNT1_37_F07.g1_A029 Root control P... 46 0.003
gb|CF670972.1|CF670972 RTCNT1_53_G07.g1_A029 Root control P... 46 0.003
gb|CO158862.1|CO158862 FLD1_9_F07.g1_A029 Root flooded Pinu... 46 0.003
gb|CO164769.1|CO164769 FLD1_50_E04.b1_A029 Root flooded Pin... 46 0.003
gb|CO169071.1|CO169071 NDL1_4_B06.g1_A029 Needles control P... 46 0.003
gb|CO196998.1|CO196998 GEO1_3_E09.b1_A029 Root gravitropism... 46 0.003
gb|CX647534.1|CX647534 COLD1_17_A03.g1_A029 Root cold Pinus... 46 0.003
gb|CX649701.1|CX649701 COLD1_41_A07.b1_A029 Root cold Pinus... 46 0.003
gb|CX649777.1|CX649777 COLD1_41_A07.g1_A029 Root cold Pinus... 46 0.003
gb|CX650204.1|CX650204 COLD1_44_D11.b1_A029 Root cold Pinus... 46 0.003
gb|CX653214.1|CX653214 COLD1_64_D05.b1_A029 Root cold Pinus... 46 0.003
gb|CX653288.1|CX653288 COLD1_64_D05.g1_A029 Root cold Pinus... 46 0.003
gb|DR010884.1|DR010884 HEAT1_2_A05.b1_A029 Root at 37 C for... 46 0.003
gb|DR010961.1|DR010961 HEAT1_2_A05.g1_A029 Root at 37 C for... 46 0.003
gb|DR051113.1|DR051113 RTBOR1_27_F04.g1_A029 Roots plus add... 46 0.003
gb|DR053024.1|DR053024 RTCA1_8_B11.g1_A029 Roots minus calc... 46 0.003
gb|DR068567.1|DR068567 RTDK1_1_C09.g1_A029 Roots, dark Pinu... 46 0.003
gb|DR161647.1|DR161647 RTFE1_13_C07.b1_A029 Roots minus iro... 46 0.003
gb|BX250469.1|BX250469 BX250469 Pinus pinaster differenciat... 42 0.044
gb|BX252449.1|BX252449 BX252449 Pinus pinaster differenciat... 42 0.044
gb|BF010556.1|BF010556 NXCI_085_H12_F NXCI (Nsf Xylem Compr... 42 0.044
gb|CF666144.1|CF666144 RTCNT1_21_D05.b1_A029 Root control P... 42 0.044
gb|BX681127.1|BX681127 BX681127 RS Pinus pinaster cDNA clon... 42 0.044
gb|BX784295.1|BX784295 BX784295 Pinus pinaster differenciat... 42 0.044
gb|CO167625.1|CO167625 FLD1_70_D02.b1_A029 Root flooded Pin... 42 0.044
gb|CX651236.1|CX651236 COLD1_51_C04.b1_A029 Root cold Pinus... 42 0.044
gb|DR016733.1|DR016733 STRS1_11_G08.g1_A034 Shoot tip pitch... 42 0.044
gb|DR019732.1|DR019732 STRS1_32_C01.b1_A034 Shoot tip pitch... 42 0.044
gb|DR019805.1|DR019805 STRS1_32_C01.g1_A034 Shoot tip pitch... 42 0.044
gb|DR097770.1|DR097770 STRR1_36_H02.g3_A033 Stem Response R... 42 0.044
gb|DR689922.1|DR689922 EST1080008 Normalized pine embryo li... 42 0.044
gb|DR742686.1|DR742686 RTCU1_5_G10.g2_A029 Roots plus added... 42 0.044
gb|DT636076.1|DT636076 EST1151007 Normalized pine embryo li... 42 0.044
gb|CF397569.1|CF397569 RTDS3_4_C10.b2_A022 Drought-stressed... 40 0.17
gb|CF397627.1|CF397627 RTDS3_4_C10.g1_A022 Drought-stressed... 40 0.17
gb|CF471988.1|CF471988 RTDS1_7_D11.g1_A015 Drought-stressed... 40 0.17
gb|CF474278.1|CF474278 RTWW2_17_G02.g1_A021 Well-watered lo... 40 0.17
gb|CF475559.1|CF475559 RTWW2_12_A10.g1_A021 Well-watered lo... 40 0.17
gb|CF663980.1|CF663980 RTCNT1_6_A04.g1_A029 Root control Pi... 40 0.17
gb|CF669366.1|CF669366 RTCNT1_42_H11.g1_A029 Root control P... 40 0.17
gb|CF672443.1|CF672443 RTCNT1_63_D05.g1_A029 Root control P... 40 0.17
gb|CO163694.1|CO163694 FLD1_43_E06.b1_A029 Root flooded Pin... 40 0.17
gb|CO163775.1|CO163775 FLD1_43_E06.g1_A029 Root flooded Pin... 40 0.17
gb|CO165416.1|CO165416 FLD1_54_H11.b1_A029 Root flooded Pin... 40 0.17
gb|CO165498.1|CO165498 FLD1_54_H11.g1_A029 Root flooded Pin... 40 0.17
gb|CO166708.1|CO166708 FLD1_64_A05.b1_A029 Root flooded Pin... 40 0.17
gb|CO166779.1|CO166779 FLD1_64_A05.g1_A029 Root flooded Pin... 40 0.17
gb|CO174479.1|CO174479 NDL1_44_F07.b1_A029 Needles control ... 40 0.17
gb|CO174561.1|CO174561 NDL1_44_F07.g1_A029 Needles control ... 40 0.17
gb|CO201053.1|CO201053 RTCNT2_3_G07.b1_A029 Root control 2 ... 40 0.17
gb|CO201131.1|CO201131 RTCNT2_3_G07.g1_A029 Root control 2 ... 40 0.17
gb|CO201751.1|CO201751 RTCNT2_7_H06.g1_A029 Root control 2 ... 40 0.17
gb|CO410163.1|CO410163 EST840548 Sequencing ESTs from loblo... 40 0.17
gb|CO410312.1|CO410312 EST840697 Sequencing ESTs from loblo... 40 0.17
gb|CO370331.1|CO370331 RTK1_67_E05.b1_A029 Roots minus pota... 40 0.17
gb|CO370407.1|CO370407 RTK1_67_E05.g1_A029 Roots minus pota... 40 0.17
gb|CV033529.1|CV033529 RTNACL1_35_C10.b1_A029 Roots plus ad... 40 0.17
gb|CV033614.1|CV033614 RTNACL1_35_C10.g1_A029 Roots plus ad... 40 0.17
gb|CX650957.1|CX650957 COLD1_49_E06.b1_A029 Root cold Pinus... 40 0.17
gb|CX651031.1|CX651031 COLD1_49_E06.g1_A029 Root cold Pinus... 40 0.17
gb|DR011171.1|DR011171 HEAT1_4_B07.b1_A029 Root at 37 C for... 40 0.17
gb|DR011245.1|DR011245 HEAT1_4_B07.g1_A029 Root at 37 C for... 40 0.17
gb|DR013338.1|DR013338 HEAT1_18_E11.g1_A029 Root at 37 C fo... 40 0.17
gb|DR016361.1|DR016361 STRS1_9_D07.g1_A034 Shoot tip pitch ... 40 0.17
gb|DR021851.1|DR021851 STRS1_47_G08.b1_A034 Shoot tip pitch... 40 0.17
gb|DR021938.1|DR021938 STRS1_47_G08.g1_A034 Shoot tip pitch... 40 0.17
gb|DR023127.1|DR023127 STRS1_55_D08.g1_A034 Shoot tip pitch... 40 0.17
gb|DR025026.1|DR025026 STRS1_69_D04.b1_A034 Shoot tip pitch... 40 0.17
gb|DR025103.1|DR025103 STRS1_69_D04.g1_A034 Shoot tip pitch... 40 0.17
gb|DR049164.1|DR049164 RTBOR1_14_A10.b1_A029 Roots plus add... 40 0.17
gb|DR053375.1|DR053375 RTCA1_10_E10.g1_A029 Roots minus cal... 40 0.17
gb|DR055398.1|DR055398 RTCA1_23_A08.g2_A029 Roots minus cal... 40 0.17
gb|DR069819.1|DR069819 RTDK1_9_D05.g1_A029 Roots, dark Pinu... 40 0.17
gb|DR089222.1|DR089222 RTAL1_7_G05.b1_A029 Roots plus added... 40 0.17
gb|DR094584.1|DR094584 STRR1_15_B04.g1_A033 Stem Response R... 40 0.17
gb|DR095700.1|DR095700 STRR1_23_B07.b1_A033 Stem Response R... 40 0.17
gb|DR095771.1|DR095771 STRR1_23_B07.g1_A033 Stem Response R... 40 0.17
gb|DR112581.1|DR112581 RTS1_29_D11.b1_A029 Roots minus sulf... 40 0.17
gb|DR116745.1|DR116745 RTMG1_2_B09.g1_A029 Roots minus magn... 40 0.17
gb|DR160788.1|DR160788 RTFE1_8_C04.b1_A029 Roots minus iron... 40 0.17
gb|DR160877.1|DR160877 RTFE1_8_C04.g1_A029 Roots minus iron... 40 0.17
gb|DR177773.1|DR177773 RTMNUT1_7_F12.b1_A029 Roots minus mi... 40 0.17
gb|DR177854.1|DR177854 RTMNUT1_7_F12.g1_A029 Roots minus mi... 40 0.17
gb|DR178343.1|DR178343 RTMNUT1_11_D11.b1_A029 Roots minus m... 40 0.17
gb|DR178423.1|DR178423 RTMNUT1_11_D11.g1_A029 Roots minus m... 40 0.17
gb|DR178689.1|DR178689 RTMNUT1_13_G12.b1_A029 Roots minus m... 40 0.17
gb|DR178768.1|DR178768 RTMNUT1_13_G12.g1_A029 Roots minus m... 40 0.17
gb|DR179225.1|DR179225 RTMNUT1_16_F12.g1_A029 Roots minus m... 40 0.17
gb|DR182311.1|DR182311 RTMNUT1_44_E10.b1_A029 Roots minus m... 40 0.17
gb|DR682485.1|DR682485 EST1072560 Normalized pine embryo li... 40 0.17
gb|DR682486.1|DR682486 EST1072561 Normalized pine embryo li... 40 0.17
gb|DR692748.1|DR692748 EST1082836 Normalized pine embryo li... 40 0.17
gb|DT625552.1|DT625552 EST1157476 Sequencing ESTs from lobl... 40 0.17
gb|DT625682.1|DT625682 EST1157606 Sequencing ESTs from lobl... 40 0.17
gb|DT631091.1|DT631091 EST1146022 Normalized pine embryo li... 40 0.17
gb|DT637592.1|DT637592 EST1152523 Normalized pine embryo li... 40 0.17
>gb|CF474049.1|CF474049 RTWW2_18_B08.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_18_B08_A021 5', mRNA sequence
Length = 780
Score = 52.0 bits (26), Expect = 5e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 257 acaagaaggtgcccgtgctcatccacaacggtaagcccatct 298
||||| |||| |||||||||||||||||||| || |||||||
Sbjct: 128 acaagcaggtccccgtgctcatccacaacggaaaacccatct 169
>gb|DN445905.1|DN445905 EST941704 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIA428 5' end, mRNA sequence
Length = 755
Score = 52.0 bits (26), Expect = 5e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 257 acaagaaggtgcccgtgctcatccacaacggtaagcccatct 298
||||| |||| |||||||||||||||||||| || |||||||
Sbjct: 132 acaagcaggtccccgtgctcatccacaacggaaaacccatct 173
>gb|DN457813.1|DN457813 EST953612 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIH436 5' end, mRNA sequence
Length = 861
Score = 52.0 bits (26), Expect = 5e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 257 acaagaaggtgcccgtgctcatccacaacggtaagcccatct 298
||||| |||| |||||||||||||||||||| || |||||||
Sbjct: 132 acaagcaggtccccgtgctcatccacaacggaaaacccatct 173
>gb|DT625364.1|DT625364 EST1159639 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAO76 5' end, mRNA sequence
Length = 811
Score = 52.0 bits (26), Expect = 5e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 257 acaagaaggtgcccgtgctcatccacaacggtaagcccatct 298
||||| |||| |||||||||||||||||||| || |||||||
Sbjct: 132 acaagcaggtccccgtgctcatccacaacggaaaacccatct 173
>gb|AW010234.1|AW010234 ST03F06 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST03F06, mRNA sequence
Length = 763
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 247 aacccggtgcacaagaaggtgcccgtgctcatccacaacggtaagcc 293
||||| || ||||||||| | || ||||||||||||||||| |||||
Sbjct: 212 aaccctgttcacaagaagattccggtgctcatccacaacggcaagcc 258
>gb|CF395690.1|CF395690 RTDS2_16_A02.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_16_A02_A021 5', mRNA sequence
Length = 762
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 247 aacccggtgcacaagaaggtgcccgtgctcatccacaacggtaagcc 293
||||| || ||||||||| | || ||||||||||||||||| |||||
Sbjct: 23 aaccctgttcacaagaagattccggtgctcatccacaacggcaagcc 69
>gb|CF470657.1|CF470657 RTDS1_13_E08.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_13_E08_A015 5', mRNA sequence
Length = 734
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 247 aacccggtgcacaagaaggtgcccgtgctcatccacaacggtaagcc 293
||||| || ||||||||| | || ||||||||||||||||| |||||
Sbjct: 192 aaccctgttcacaagaagattccggtgctcatccacaacggaaagcc 238
>gb|CF664978.1|CF664978 RTCNT1_13_C10.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_13_C10_A029 3', mRNA sequence
Length = 773
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 247 aacccggtgcacaagaaggtgcccgtgctcatccacaacggtaagcc 293
||||| || ||||||||| | || ||||||||||||||||| |||||
Sbjct: 25 aaccctgttcacaagaagattccagtgctcatccacaacggcaagcc 71
>gb|CF665055.1|CF665055 RTCNT1_13_C10.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_13_C10_A029 5', mRNA sequence
Length = 659
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 247 aacccggtgcacaagaaggtgcccgtgctcatccacaacggtaagcc 293
||||| || ||||||||| | || ||||||||||||||||| |||||
Sbjct: 143 aaccctgttcacaagaagattccagtgctcatccacaacggcaagcc 189
>gb|CF665536.1|CF665536 RTCNT1_16_D05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_16_D05_A029 5', mRNA sequence
Length = 533
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 247 aacccggtgcacaagaaggtgcccgtgctcatccacaacggtaagcc 293
||||| || ||||||||| | || ||||||||||||||||| |||||
Sbjct: 170 aaccctgttcacaagaagattccggtgctcatccacaacggcaagcc 216
>gb|CF666205.1|CF666205 RTCNT1_21_D05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_21_D05_A029 5', mRNA sequence
Length = 253
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 247 aacccggtgcacaagaaggtgcccgtgctcatccacaacggtaagcc 293
||||| || ||||||||| | || ||||||||||||||||| |||||
Sbjct: 190 aaccctgttcacaagaagattccggtgctcatccacaacggcaagcc 236
>gb|CF667732.1|CF667732 RTCNT1_32_E07.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_32_E07_A029 3', mRNA sequence
Length = 740
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 247 aacccggtgcacaagaaggtgcccgtgctcatccacaacggtaagcc 293
||||| || ||||||||| | || ||||||||||||||||| |||||
Sbjct: 550 aaccctgttcacaagaagattccggtgctcatccacaacggcaagcc 504
>gb|CF667817.1|CF667817 RTCNT1_32_E07.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_32_E07_A029 5', mRNA sequence
Length = 780
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 247 aacccggtgcacaagaaggtgcccgtgctcatccacaacggtaagcc 293
||||| || ||||||||| | || ||||||||||||||||| |||||
Sbjct: 710 aaccctgttcacaagaagattccggtgctcatccacaacggcaagcc 664
>gb|CF668197.1|CF668197 RTCNT1_35_B06.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_35_B06_A029 3', mRNA sequence
Length = 764
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 247 aacccggtgcacaagaaggtgcccgtgctcatccacaacggtaagcc 293
||||| || ||||||||| | || ||||||||||||||||| |||||
Sbjct: 583 aaccctgttcacaagaagattccggtgctcatccacaacggcaagcc 537
>gb|CF668641.1|CF668641 RTCNT1_37_F07.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_37_F07_A029 5', mRNA sequence
Length = 774
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 247 aacccggtgcacaagaaggtgcccgtgctcatccacaacggtaagcc 293
||||| || ||||||||| | || ||||||||||||||||| |||||
Sbjct: 138 aaccctgttcacaagaagattccagtgctcatccacaacggcaagcc 184
>gb|CF670972.1|CF670972 RTCNT1_53_G07.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_53_G07_A029 5', mRNA sequence
Length = 714
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 247 aacccggtgcacaagaaggtgcccgtgctcatccacaacggtaagcc 293
||||| || ||||||||| | || ||||||||||||||||| |||||
Sbjct: 178 aaccctgttcacaagaagattccagtgctcatccacaacggcaagcc 224
>gb|CO158862.1|CO158862 FLD1_9_F07.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_9_F07_A029 5', mRNA sequence
Length = 817
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 247 aacccggtgcacaagaaggtgcccgtgctcatccacaacggtaagcc 293
||||| || ||||||||| | || ||||||||||||||||| |||||
Sbjct: 139 aaccctgttcacaagaagattccggtgctcatccacaacggcaagcc 185
>gb|CO164769.1|CO164769 FLD1_50_E04.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_50_E04_A029 3', mRNA sequence
Length = 854
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 247 aacccggtgcacaagaaggtgcccgtgctcatccacaacggtaagcc 293
||||| || ||||||||| | || ||||||||||||||||| |||||
Sbjct: 71 aaccctgttcacaagaagattccggtgctcatccacaacggcaagcc 117
>gb|CO169071.1|CO169071 NDL1_4_B06.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_4_B06_A029 5', mRNA sequence
Length = 674
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 247 aacccggtgcacaagaaggtgcccgtgctcatccacaacggtaagcc 293
||||| || ||||||||| | || ||||||||||||||||| |||||
Sbjct: 131 aaccctgttcacaagaagattccggtgctcatccacaacggcaagcc 177
>gb|CO196998.1|CO196998 GEO1_3_E09.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_3_E09_A029 3', mRNA sequence
Length = 519
Score = 46.1 bits (23), Expect = 0.003
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 223 aagagtgagctcctgctcaagtccaacccggtgcacaagaaggtgcccgtgctcatccac 282
||||| ||||| ||||| || || ||||| || ||||||||| | || ||||||||||||
Sbjct: 339 aagagcgagctgctgctgaaatcgaaccctgtccacaagaagatacctgtgctcatccac 280
Query: 283 aacggtaagcc 293
|| || |||||
Sbjct: 279 aatggaaagcc 269
>gb|CX647534.1|CX647534 COLD1_17_A03.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_17_A03_A029 5', mRNA sequence
Length = 478
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 247 aacccggtgcacaagaaggtgcccgtgctcatccacaacggtaagcc 293
||||| || ||||||||| | || ||||||||||||||||| |||||
Sbjct: 158 aaccctgttcacaagaagattccagtgctcatccacaacggcaagcc 204
>gb|CX649701.1|CX649701 COLD1_41_A07.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_41_A07_A029 3', mRNA sequence
Length = 802
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 247 aacccggtgcacaagaaggtgcccgtgctcatccacaacggtaagcc 293
||||| || ||||||||| | || ||||||||||||||||| |||||
Sbjct: 597 aaccctgttcacaagaagtttccggtgctcatccacaacggcaagcc 551
>gb|CX649777.1|CX649777 COLD1_41_A07.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_41_A07_A029 5', mRNA sequence
Length = 749
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 247 aacccggtgcacaagaaggtgcccgtgctcatccacaacggtaagcc 293
||||| || ||||||||| | || ||||||||||||||||| |||||
Sbjct: 730 aaccctgttcacaagaagtttccggtgctcatccacaacggcaagcc 684
>gb|CX650204.1|CX650204 COLD1_44_D11.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_44_D11_A029 3', mRNA sequence
Length = 829
Score = 46.1 bits (23), Expect = 0.003
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 223 aagagtgagctcctgctcaagtccaacccggtgcacaagaaggtgcccgtgctcatccac 282
||||| ||||| ||||| || || ||||| || ||||||||| | || ||||||||||||
Sbjct: 724 aagagcgagctgctgctgaaatcgaaccctgtccacaagaagatacctgtgctcatccac 665
Query: 283 aacggtaagcc 293
|| || |||||
Sbjct: 664 aatggaaagcc 654
>gb|CX653214.1|CX653214 COLD1_64_D05.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_64_D05_A029 3', mRNA sequence
Length = 805
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 247 aacccggtgcacaagaaggtgcccgtgctcatccacaacggtaagcc 293
||||| || ||||||||| | || ||||||||||||||||| |||||
Sbjct: 73 aaccctgttcacaagaagattccggtgctcatccacaacggcaagcc 119
>gb|CX653288.1|CX653288 COLD1_64_D05.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_64_D05_A029 5', mRNA sequence
Length = 759
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 247 aacccggtgcacaagaaggtgcccgtgctcatccacaacggtaagcc 293
||||| || ||||||||| | || ||||||||||||||||| |||||
Sbjct: 171 aaccctgttcacaagaagattccggtgctcatccacaacggcaagcc 217
>gb|DR010884.1|DR010884 HEAT1_2_A05.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_2_A05_A029 3', mRNA sequence
Length = 743
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 247 aacccggtgcacaagaaggtgcccgtgctcatccacaacggtaagcc 293
||||| || ||||||||| | || ||||||||||||||||| |||||
Sbjct: 544 aaccctgttcacaagaagattccggtgctcatccacaacggcaagcc 498
>gb|DR010961.1|DR010961 HEAT1_2_A05.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_2_A05_A029 5', mRNA sequence
Length = 796
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 247 aacccggtgcacaagaaggtgcccgtgctcatccacaacggtaagcc 293
||||| || ||||||||| | || ||||||||||||||||| |||||
Sbjct: 732 aaccctgttcacaagaagattccggtgctcatccacaacggcaagcc 686
>gb|DR051113.1|DR051113 RTBOR1_27_F04.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_27_F04_A029 5', mRNA sequence
Length = 816
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 247 aacccggtgcacaagaaggtgcccgtgctcatccacaacggtaagcc 293
||||| || ||||||||| | || ||||||||||||||||| |||||
Sbjct: 158 aaccctgttcacaagaagattccggtgctcatccacaacggcaagcc 204
>gb|DR053024.1|DR053024 RTCA1_8_B11.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_8_B11_A029 5', mRNA sequence
Length = 784
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 247 aacccggtgcacaagaaggtgcccgtgctcatccacaacggtaagcc 293
||||| || ||||||||| | || ||||||||||||||||| |||||
Sbjct: 169 aaccctgttcacaagaagattccggtgctcatccacaacggcaagcc 215
>gb|DR068567.1|DR068567 RTDK1_1_C09.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_1_C09_A029 5', mRNA sequence
Length = 754
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 247 aacccggtgcacaagaaggtgcccgtgctcatccacaacggtaagcc 293
||||| || ||||||||| | || ||||||||||||||||| |||||
Sbjct: 58 aaccctgttcacaagaagattccggtgctcatccacaacggcaagcc 104
>gb|DR161647.1|DR161647 RTFE1_13_C07.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_13_C07_A029 3', mRNA sequence
Length = 516
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 247 aacccggtgcacaagaaggtgcccgtgctcatccacaacggtaagcc 293
||||| || ||||||||| | || ||||||||||||||||| |||||
Sbjct: 336 aaccctgttcacaagaagattccggtgctcatccacaacggcaagcc 290
>gb|BX250469.1|BX250469 BX250469 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP037D02 similar to PROBABLE GLUTATHIONE S
TRANSFERASE, mRNA sequence
Length = 571
Score = 42.1 bits (21), Expect = 0.044
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 379 gccactgctcgcttctgggctgcct 403
|||| ||||||||||||||||||||
Sbjct: 340 gccaatgctcgcttctgggctgcct 364
>gb|BX252449.1|BX252449 BX252449 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP064G01 similar to PROBABLE GLUTATHIONE S
TRANSFERASE, mRNA sequence
Length = 668
Score = 42.1 bits (21), Expect = 0.044
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 379 gccactgctcgcttctgggctgcct 403
|||| ||||||||||||||||||||
Sbjct: 335 gccaatgctcgcttctgggctgcct 359
>gb|BF010556.1|BF010556 NXCI_085_H12_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_085_H12 5' similar to Arabidopsis
thaliana sequence At1g10360 putative glutathione
S-transferase TSI-1 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 390
Score = 42.1 bits (21), Expect = 0.044
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 379 gccactgctcgcttctgggctgcct 403
|||| ||||||||||||||||||||
Sbjct: 158 gccattgctcgcttctgggctgcct 182
>gb|CF666144.1|CF666144 RTCNT1_21_D05.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_21_D05_A029 3', mRNA sequence
Length = 761
Score = 42.1 bits (21), Expect = 0.044
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 257 acaagaaggtgcccgtgctcatccacaacggtaagcc 293
|||||||| | || ||||||||||||||||| |||||
Sbjct: 1 acaagaagattccggtgctcatccacaacggcaagcc 37
>gb|BX681127.1|BX681127 BX681127 RS Pinus pinaster cDNA clone RS54B10, mRNA sequence
Length = 594
Score = 42.1 bits (21), Expect = 0.044
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 247 aacccggtgcacaagaaggtgcccgtgctcatccacaacgg 287
||||| || ||||||||| | || |||||||||||||||||
Sbjct: 183 aaccctgttcacaagaagattccggtgctcatccacaacgg 223
>gb|BX784295.1|BX784295 BX784295 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 132B07 similar to GLUTATHIONE S-TRANSFERASE
(EC 2.5.1.18), mRNA sequence
Length = 682
Score = 42.1 bits (21), Expect = 0.044
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 379 gccactgctcgcttctgggctgcct 403
|||| ||||||||||||||||||||
Sbjct: 327 gccaatgctcgcttctgggctgcct 351
>gb|CO167625.1|CO167625 FLD1_70_D02.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_70_D02_A029 3', mRNA sequence
Length = 704
Score = 42.1 bits (21), Expect = 0.044
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 257 acaagaaggtgcccgtgctcatccacaacggtaagcc 293
|||||||| | || ||||||||||||||||| |||||
Sbjct: 1 acaagaagattccggtgctcatccacaacggcaagcc 37
>gb|CX651236.1|CX651236 COLD1_51_C04.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_51_C04_A029 3', mRNA sequence
Length = 367
Score = 42.1 bits (21), Expect = 0.044
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 247 aacccggtgcacaagaaggtgcccgtgctcatccacaacgg 287
||||| || ||||||||| | || |||||||||||||||||
Sbjct: 196 aaccctgttcacaagaagattccggtgctcatccacaacgg 156
>gb|DR016733.1|DR016733 STRS1_11_G08.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_11_G08_A034 5', mRNA sequence
Length = 920
Score = 42.1 bits (21), Expect = 0.044
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 379 gccactgctcgcttctgggctgcct 403
|||| ||||||||||||||||||||
Sbjct: 312 gccattgctcgcttctgggctgcct 336
>gb|DR019732.1|DR019732 STRS1_32_C01.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_32_C01_A034 3', mRNA sequence
Length = 721
Score = 42.1 bits (21), Expect = 0.044
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 379 gccactgctcgcttctgggctgcct 403
|||| ||||||||||||||||||||
Sbjct: 147 gccattgctcgcttctgggctgcct 171
>gb|DR019805.1|DR019805 STRS1_32_C01.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_32_C01_A034 5', mRNA sequence
Length = 722
Score = 42.1 bits (21), Expect = 0.044
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 379 gccactgctcgcttctgggctgcct 403
|||| ||||||||||||||||||||
Sbjct: 305 gccattgctcgcttctgggctgcct 329
>gb|DR097770.1|DR097770 STRR1_36_H02.g3_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_36_H02_A033 5', mRNA sequence
Length = 913
Score = 42.1 bits (21), Expect = 0.044
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 379 gccactgctcgcttctgggctgcct 403
|||| ||||||||||||||||||||
Sbjct: 320 gccattgctcgcttctgggctgcct 344
>gb|DR689922.1|DR689922 EST1080008 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACP02 3' end, mRNA sequence
Length = 812
Score = 42.1 bits (21), Expect = 0.044
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 379 gccactgctcgcttctgggctgcct 403
|||| ||||||||||||||||||||
Sbjct: 350 gccattgctcgcttctgggctgcct 374
>gb|DR742686.1|DR742686 RTCU1_5_G10.g2_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_5_G10_A029 5', mRNA sequence
Length = 307
Score = 42.1 bits (21), Expect = 0.044
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 256 cacaagaaggtgcccgtgctcatccacaa 284
||||||||||| ||||| |||||||||||
Sbjct: 188 cacaagaaggtacccgtactcatccacaa 216
>gb|DT636076.1|DT636076 EST1151007 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGN75 3' end, mRNA sequence
Length = 774
Score = 42.1 bits (21), Expect = 0.044
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 379 gccactgctcgcttctgggctgcct 403
|||| ||||||||||||||||||||
Sbjct: 358 gccattgctcgcttctgggctgcct 382
>gb|CF397569.1|CF397569 RTDS3_4_C10.b2_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_4_C10_A022 3', mRNA sequence
Length = 627
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 384 tgctcgcttctgggctgcct 403
||||||||||||||||||||
Sbjct: 26 tgctcgcttctgggctgcct 45
>gb|CF397627.1|CF397627 RTDS3_4_C10.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_4_C10_A022 5', mRNA sequence
Length = 745
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 384 tgctcgcttctgggctgcct 403
||||||||||||||||||||
Sbjct: 294 tgctcgcttctgggctgcct 313
>gb|CF471988.1|CF471988 RTDS1_7_D11.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_7_D11_A015 5', mRNA sequence
Length = 697
Score = 40.1 bits (20), Expect = 0.17
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 257 acaagaaggtgcccgtgctcatccacaa 284
||||| |||| |||||||||||||||||
Sbjct: 253 acaagcaggtccccgtgctcatccacaa 280
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 107,103
Number of Sequences: 355925
Number of extensions: 107103
Number of successful extensions: 25912
Number of sequences better than 0.5: 110
Number of HSP's better than 0.5 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25754
Number of HSP's gapped (non-prelim): 158
length of query: 1013
length of database: 217,277,237
effective HSP length: 19
effective length of query: 994
effective length of database: 210,514,662
effective search space: 209251574028
effective search space used: 209251574028
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)