BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3696569.2.1
(1022 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF476071.1|CF476071 RTWW2_16_D03.g1_A021 Well-watered lo... 68 8e-010
gb|CF479898.1|CF479898 RTWW3_12_H04.g1_A022 Well-watered lo... 68 8e-010
gb|CO197872.1|CO197872 GEO1_9_E12.g1_A029 Root gravitropism... 68 8e-010
gb|CX649869.1|CX649869 COLD1_42_B01.b1_A029 Root cold Pinus... 68 8e-010
gb|CX649938.1|CX649938 COLD1_42_B01.g1_A029 Root cold Pinus... 68 8e-010
gb|DR070227.1|DR070227 RTDK1_12_C03.b1_A029 Roots, dark Pin... 68 8e-010
gb|DR181356.1|DR181356 RTMNUT1_38_A01.g2_A029 Roots minus m... 68 8e-010
gb|U64890.1|PTU64890 Pinus taeda expansin mRNA, partial cds 68 8e-010
gb|U64891.1|PTU64891 Pinus taeda expansin mRNA, partial cds 68 8e-010
gb|U64893.1|PTU64893 Pinus taeda expansin mRNA, partial cds 68 8e-010
gb|AF085330.1|AF085330 Pinus taeda expansin mRNA, complete cds 68 8e-010
gb|U64892.1|PTU64892 Pinus taeda expansin mRNA, partial cds 68 8e-010
gb|CF391855.1|CF391855 RTDR3_10_C05.g1_A022 Loblolly pine r... 66 3e-009
gb|CN784348.1|CN784348 EST783039 Sequencing ESTs from loblo... 66 3e-009
gb|CX650764.1|CX650764 COLD1_48_A05.b1_A029 Root cold Pinus... 66 3e-009
gb|DR688987.1|DR688987 EST1079073 Normalized pine embryo li... 66 3e-009
gb|DR692635.1|DR692635 EST1082723 Normalized pine embryo li... 66 3e-009
gb|DT625757.1|DT625757 EST1157681 Sequencing ESTs from lobl... 66 3e-009
gb|DR070312.1|DR070312 RTDK1_12_C03.g1_A029 Roots, dark Pin... 64 1e-008
gb|DR097316.1|DR097316 STRR1_33_H05.g3_A033 Stem Response R... 64 1e-008
gb|CO368672.1|CO368672 RTK1_42_C07.b1_A029 Roots minus pota... 62 5e-008
gb|CO368748.1|CO368748 RTK1_42_C07.g1_A029 Roots minus pota... 62 5e-008
gb|DT624311.1|DT624311 EST1158586 Sequencing ESTs from lobl... 62 5e-008
gb|BG039378.1|BG039378 NXSI_098_D11_F NXSI (Nsf Xylem Side ... 58 7e-007
gb|CF399941.1|CF399941 RTWW1_2_C11.b1_A015 Well-watered lob... 58 7e-007
gb|CF400653.1|CF400653 RTWW1_6_A01.g1_A015 Well-watered lob... 58 7e-007
gb|CF475910.1|CF475910 RTWW2_15_D07.g1_A021 Well-watered lo... 58 7e-007
gb|CO172418.1|CO172418 NDL1_29_D02.g1_A029 Needles control ... 58 7e-007
gb|CX650634.1|CX650634 COLD1_47_B12.b1_A029 Root cold Pinus... 58 7e-007
gb|CX650703.1|CX650703 COLD1_47_B12.g1_A029 Root cold Pinus... 58 7e-007
gb|DR055360.1|DR055360 RTCA1_23_E11.b1_A029 Roots minus cal... 58 7e-007
gb|DR055518.1|DR055518 RTCA1_24_E10.b1_A029 Roots minus cal... 58 7e-007
gb|DR070635.1|DR070635 RTDK1_14_D09.g1_A029 Roots, dark Pin... 58 7e-007
gb|DR692432.1|DR692432 EST1082520 Normalized pine embryo li... 58 7e-007
gb|DR011201.1|DR011201 HEAT1_4_E06.b1_A029 Root at 37 C for... 56 3e-006
gb|DR047687.1|DR047687 RTBOR1_2_F07.g1_A029 Roots plus adde... 56 3e-006
gb|DR120161.1|DR120161 RTMG1_27_H07.g2_A029 Roots minus mag... 56 3e-006
gb|DR180723.1|DR180723 RTMNUT1_34_A06.g1_A029 Roots minus m... 56 3e-006
gb|CF400025.1|CF400025 RTWW1_2_C11.g1_A015 Well-watered lob... 54 1e-005
gb|CF663902.1|CF663902 RTCNT1_5_H12.g1_A029 Root control Pi... 54 1e-005
gb|CF666895.1|CF666895 RTCNT1_26_G11.g1_A029 Root control P... 54 1e-005
gb|CO171305.1|CO171305 NDL1_20_C09.g1_A029 Needles control ... 54 1e-005
gb|CO369598.1|CO369598 RTK1_48_F01.b1_A029 Roots minus pota... 54 1e-005
gb|CO369680.1|CO369680 RTK1_48_F01.g1_A029 Roots minus pota... 54 1e-005
gb|CV035793.1|CV035793 RTNACL1_42_B01.g1_A029 Roots plus ad... 54 1e-005
gb|CV144435.1|CV144435 EST855644 Sequencing ESTs from loblo... 54 1e-005
gb|DR071171.1|DR071171 RTDK1_18_C12.b1_A029 Roots, dark Pin... 54 1e-005
gb|DT624714.1|DT624714 EST1159049 Sequencing ESTs from lobl... 54 1e-005
gb|CF477384.1|CF477384 RTWW3_7_A01.g1_A022 Well-watered lob... 52 5e-005
gb|CO361349.1|CO361349 NDL2_4_G08.b1_A029 Needles control 2... 52 5e-005
gb|CO361435.1|CO361435 NDL2_4_G08.g1_A029 Needles control 2... 52 5e-005
gb|CO367410.1|CO367410 RTK1_34_D03.b1_A029 Roots minus pota... 52 5e-005
gb|CO367487.1|CO367487 RTK1_34_D03.g1_A029 Roots minus pota... 52 5e-005
gb|CX648594.1|CX648594 COLD1_29_D11.g1_A029 Root cold Pinus... 52 5e-005
gb|CX648930.1|CX648930 COLD1_31_H02.g1_A029 Root cold Pinus... 52 5e-005
gb|DR050231.1|DR050231 RTBOR1_22_D04.b1_A029 Roots plus add... 52 5e-005
gb|DR050310.1|DR050310 RTBOR1_22_D04.g1_A029 Roots plus add... 52 5e-005
gb|DR051762.1|DR051762 RTBOR1_32_E10.b1_A029 Roots plus add... 52 5e-005
gb|DR051834.1|DR051834 RTBOR1_32_E10.g1_A029 Roots plus add... 52 5e-005
gb|DR093671.1|DR093671 STRR1_9_E07.g1_A033 Stem Response Re... 52 5e-005
gb|DR163147.1|DR163147 RTFE1_41_E12.b1_A029 Roots minus iro... 52 5e-005
gb|DR163235.1|DR163235 RTFE1_41_E12.g1_A029 Roots minus iro... 52 5e-005
gb|DR163481.1|DR163481 RTFE1_43_D12.b1_A029 Roots minus iro... 52 5e-005
gb|DR163657.1|DR163657 RTFE1_44_D12.b1_A029 Roots minus iro... 52 5e-005
gb|DR163745.1|DR163745 RTFE1_44_D12.g1_A029 Roots minus iro... 52 5e-005
gb|DR165660.1|DR165660 RTPHOS1_6_B10.g1_A029 Roots minus ph... 52 5e-005
gb|DR168497.1|DR168497 RTPHOS1_25_G11.g1_A029 Roots minus p... 52 5e-005
gb|DR694543.1|DR694543 EST1084635 Normalized pine embryo li... 52 5e-005
gb|DR742067.1|DR742067 RTCU1_1_B09.g1_A029 Roots plus added... 52 5e-005
gb|DT639052.1|DT639052 EST1153983 Normalized pine embryo li... 52 5e-005
gb|AW290421.1|AW290421 NXNV020D02F Nsf Xylem Normal wood Ve... 50 2e-004
gb|BX251144.1|BX251144 BX251144 Pinus pinaster differenciat... 50 2e-004
gb|BX251561.1|BX251561 BX251561 Pinus pinaster differenciat... 50 2e-004
gb|BX251613.1|BX251613 BX251613 Pinus pinaster differenciat... 50 2e-004
gb|BX253271.1|BX253271 BX253271 Pinus pinaster differenciat... 50 2e-004
gb|BX254474.1|BX254474 BX254474 Pinus pinaster differenciat... 50 2e-004
gb|BE762031.1|BE762031 NXCI_076_B10_F NXCI (Nsf Xylem Compr... 50 2e-004
gb|CD027081.1|CD027081 NXNV020D02 Nsf Xylem Normal wood Ver... 50 2e-004
gb|CF386013.1|CF386013 RTDR1_7_F11.g1_A015 Loblolly pine ro... 50 2e-004
gb|CF391890.1|CF391890 RTDR3_10_G01.g1_A022 Loblolly pine r... 50 2e-004
gb|CF479851.1|CF479851 RTWW3_12_D07.g1_A022 Well-watered lo... 50 2e-004
gb|CF668487.1|CF668487 RTCNT1_36_F12.g1_A029 Root control P... 50 2e-004
gb|BX682844.1|BX682844 BX682844 Pinus pinaster differenciat... 50 2e-004
gb|CR393207.1|CR393207 CR393207 RN Pinus pinaster cDNA clon... 50 2e-004
gb|CR393417.1|CR393417 CR393417 RN Pinus pinaster cDNA clon... 50 2e-004
gb|CO166169.1|CO166169 FLD1_59_G05.g1_A029 Root flooded Pin... 50 2e-004
gb|CO200976.1|CO200976 RTCNT2_2_G03.g1_A029 Root control 2 ... 50 2e-004
gb|CO362158.1|CO362158 RTK1_1_E05.g1_A029 Roots minus potas... 50 2e-004
gb|CO362167.1|CO362167 RTK1_1_F05.g1_A029 Roots minus potas... 50 2e-004
gb|DR015281.1|DR015281 STRS1_2_C05.g1_A034 Shoot tip pitch ... 50 2e-004
gb|DR022663.1|DR022663 STRS1_52_D06.g1_A034 Shoot tip pitch... 50 2e-004
gb|DR023285.1|DR023285 STRS1_56_D02.g1_A034 Shoot tip pitch... 50 2e-004
gb|DR024833.1|DR024833 STRS1_67_F03.g1_A034 Shoot tip pitch... 50 2e-004
gb|DR051531.1|DR051531 RTBOR1_30_E09.g1_A029 Roots plus add... 50 2e-004
gb|DR055601.1|DR055601 RTCA1_24_E10.g2_A029 Roots minus cal... 50 2e-004
gb|DR070152.1|DR070152 RTDK1_11_D01.g1_A029 Roots, dark Pin... 50 2e-004
gb|DR080162.1|DR080162 RTFEPL1_20_E11.g1_A029 Roots plus ad... 50 2e-004
gb|DR093057.1|DR093057 STRR1_5_F06.g1_A033 Stem Response Re... 50 2e-004
gb|DR096273.1|DR096273 STRR1_26_H05.g1_A033 Stem Response R... 50 2e-004
gb|DR096352.1|DR096352 STRR1_27_A07.g1_A033 Stem Response R... 50 2e-004
gb|DR099166.1|DR099166 STRR1_53_C12.g1_A033 Stem Response R... 50 2e-004
gb|DR100480.1|DR100480 STRR1_64_A12.g1_A033 Stem Response R... 50 2e-004
gb|DR120128.1|DR120128 RTMG1_27_E05.g2_A029 Roots minus mag... 50 2e-004
gb|DR687528.1|DR687528 EST1077610 Normalized pine embryo li... 50 2e-004
gb|DR692513.1|DR692513 EST1082601 Normalized pine embryo li... 50 2e-004
gb|DR746394.1|DR746394 RTCU1_36_E04.g1_A029 Roots plus adde... 50 2e-004
gb|DT633920.1|DT633920 EST1148851 Normalized pine embryo li... 50 2e-004
gb|DT637181.1|DT637181 EST1152112 Normalized pine embryo li... 50 2e-004
gb|AA556812.1|AA556812 654 Loblolly pine C Pinus taeda cDNA... 48 7e-004
gb|AA556861.1|AA556861 703 Loblolly pine C Pinus taeda cDNA... 48 7e-004
gb|AW011524.1|AW011524 ST21H02 Pine TriplEx shoot tip libra... 48 7e-004
gb|BF049828.1|BF049828 NXCI_111_D09_F NXCI (Nsf Xylem Compr... 48 7e-004
gb|BF609490.1|BF609490 NXSI_043_C03_F NXSI (Nsf Xylem Side ... 48 7e-004
gb|BF609532.1|BF609532 NXSI_043_G01_F NXSI (Nsf Xylem Side ... 48 7e-004
gb|BF778581.1|BF778581 NXSI_088_D02_F NXSI (Nsf Xylem Side ... 48 7e-004
gb|CX646780.1|CX646780 COLD1_11_B06.g1_A029 Root cold Pinus... 48 7e-004
gb|CX649475.1|CX649475 COLD1_35_B04.g1_A029 Root cold Pinus... 48 7e-004
gb|CX652556.1|CX652556 COLD1_59_H02.g1_A029 Root cold Pinus... 48 7e-004
gb|CX713463.1|CX713463 RTPQ1_9_C04.g1_A032 Roots treated wi... 48 7e-004
gb|DR010784.1|DR010784 HEAT1_1_F12.b1_A029 Root at 37 C for... 48 7e-004
gb|DR010861.1|DR010861 HEAT1_1_F12.g1_A029 Root at 37 C for... 48 7e-004
gb|DR011619.1|DR011619 HEAT1_6_G09.g1_A029 Root at 37 C for... 48 7e-004
gb|DR055148.1|DR055148 RTCA1_21_G09.g2_A029 Roots minus cal... 48 7e-004
gb|DR056610.1|DR056610 RTCA1_31_A02.g1_A029 Roots minus cal... 48 7e-004
gb|DR070179.1|DR070179 RTDK1_11_F07.g1_A029 Roots, dark Pin... 48 7e-004
gb|DR072178.1|DR072178 RTDK1_24_C09.g1_A029 Roots, dark Pin... 48 7e-004
gb|DR089298.1|DR089298 RTAL1_7_G03.g1_A029 Roots plus added... 48 7e-004
gb|DR090373.1|DR090373 RTAL1_14_D02.g1_A029 Roots plus adde... 48 7e-004
gb|DR090533.1|DR090533 RTAL1_15_E12.g1_A029 Roots plus adde... 48 7e-004
gb|DR092307.1|DR092307 RTAL1_28_G05.b1_A029 Roots plus adde... 48 7e-004
gb|DR098553.1|DR098553 STRR1_46_F12.b1_A033 Stem Response R... 48 7e-004
gb|DR100599.1|DR100599 STRR1_65_E02.g1_A033 Stem Response R... 48 7e-004
gb|DR102236.1|DR102236 STRR1_79_C04.g1_A033 Stem Response R... 48 7e-004
gb|DR113034.1|DR113034 RTS1_32_B12.g1_A029 Roots minus sulf... 48 7e-004
gb|DR163422.1|DR163422 RTFE1_42_G07.g1_A029 Roots minus iro... 48 7e-004
gb|DR683982.1|DR683982 EST1074058 Normalized pine embryo li... 48 7e-004
gb|DR684423.1|DR684423 EST1074500 Normalized pine embryo li... 48 7e-004
gb|DT631935.1|DT631935 EST1146866 Normalized pine embryo li... 48 7e-004
gb|DT632413.1|DT632413 EST1147344 Normalized pine embryo li... 48 7e-004
gb|DT636492.1|DT636492 EST1151423 Normalized pine embryo li... 48 7e-004
gb|BX250040.1|BX250040 BX250040 Pinus pinaster differenciat... 46 0.003
gb|BQ198383.1|BQ198383 NXLV130_C02_F NXLV (Nsf Xylem Late w... 46 0.003
gb|CF386766.1|CF386766 RTDR1_16_C08.g1_A015 Loblolly pine r... 46 0.003
gb|CF400637.1|CF400637 RTWW1_6_B06.g1_A015 Well-watered lob... 46 0.003
gb|CF471900.1|CF471900 RTDS1_7_A08.b1_A015 Drought-stressed... 46 0.003
gb|CF471926.1|CF471926 RTDS1_7_A08.g1_A015 Drought-stressed... 46 0.003
gb|CF478581.1|CF478581 RTWW3_16_B04.b1_A022 Well-watered lo... 46 0.003
gb|CF668214.1|CF668214 RTCNT1_35_D04.b1_A029 Root control P... 46 0.003
gb|CF668294.1|CF668294 RTCNT1_35_D04.g1_A029 Root control P... 46 0.003
gb|DR021085.1|DR021085 STRS1_42_F09.b1_A034 Shoot tip pitch... 46 0.003
gb|DR021165.1|DR021165 STRS1_42_F09.g1_A034 Shoot tip pitch... 46 0.003
gb|DR095411.1|DR095411 STRR1_20_G09.g1_A033 Stem Response R... 46 0.003
gb|DR096360.1|DR096360 STRR1_27_B05.g1_A033 Stem Response R... 46 0.003
gb|DR120696.1|DR120696 RTMG1_31_G12.b1_A029 Roots minus mag... 46 0.003
gb|DR168662.1|DR168662 RTPHOS1_27_B09.b1_A029 Roots minus p... 46 0.003
gb|DR685073.1|DR685073 EST1075150 Normalized pine embryo li... 46 0.003
gb|CF477424.1|CF477424 RTWW3_7_B01.g1_A022 Well-watered lob... 44 0.011
gb|CO169428.1|CO169428 NDL1_7_B04.b1_A029 Needles control P... 44 0.011
gb|CO169500.1|CO169500 NDL1_7_B04.g1_A029 Needles control P... 44 0.011
gb|DR053875.1|DR053875 RTCA1_13_G12.g1_A029 Roots minus cal... 44 0.011
gb|DR119250.1|DR119250 RTMG1_22_C11.b1_A029 Roots minus mag... 44 0.011
gb|DR119331.1|DR119331 RTMG1_22_C11.g1_A029 Roots minus mag... 44 0.011
gb|DR745029.1|DR745029 RTCU1_26_C03.g1_A029 Roots plus adde... 44 0.011
gb|CF401946.1|CF401946 RTWW1_16_F09.b1_A015 Well-watered lo... 42 0.044
gb|CF402042.1|CF402042 RTWW1_16_F09.g1_A015 Well-watered lo... 42 0.044
gb|CV138360.1|CV138360 EST849569 Sequencing ESTs from loblo... 42 0.044
gb|AW290718.1|AW290718 NXNV046B02F Nsf Xylem Normal wood Ve... 40 0.17
gb|AW985386.1|AW985386 NXNV_134_G08_F Nsf Xylem Normal wood... 40 0.17
gb|BE049743.1|BE049743 NXNV_143_C08_F Nsf Xylem Normal wood... 40 0.17
gb|BF186094.1|BF186094 NXCI_132_F04_F NXCI (Nsf Xylem Compr... 40 0.17
gb|BF609081.1|BF609081 NXSI_040_B10_F NXSI (Nsf Xylem Side ... 40 0.17
gb|BG275593.1|BG275593 NXSI_143_F09_F NXSI (Nsf Xylem Side ... 40 0.17
gb|CD020758.1|CD020758 NXNV_085_G07_F Nsf Xylem Normal wood... 40 0.17
gb|CD027376.1|CD027376 NXNV046B02 Nsf Xylem Normal wood Ver... 40 0.17
gb|CF386668.1|CF386668 RTDR1_16_C08.b1_A015 Loblolly pine r... 40 0.17
gb|CF396870.1|CF396870 RTDS2_24_A10.g1_A021 Drought-stresse... 40 0.17
gb|CF400511.1|CF400511 RTWW1_6_B06.b1_A015 Well-watered lob... 40 0.17
gb|CF474408.1|CF474408 RTWW2_20_A09.g1_A021 Well-watered lo... 40 0.17
gb|CF668454.1|CF668454 RTCNT1_36_C09.g1_A029 Root control P... 40 0.17
gb|CO197560.1|CO197560 GEO1_7_H02.b1_A029 Root gravitropism... 40 0.17
gb|DR015200.1|DR015200 STRS1_2_C05.b1_A034 Shoot tip pitch ... 40 0.17
gb|DR092975.1|DR092975 STRR1_5_F06.b1_A033 Stem Response Re... 40 0.17
gb|DR100138.1|DR100138 STRR1_62_B05.b1_A033 Stem Response R... 40 0.17
gb|DR100574.1|DR100574 STRR1_65_E02.b1_A033 Stem Response R... 40 0.17
gb|DR102735.1|DR102735 STRR1_83_A06.g1_A033 Stem Response R... 40 0.17
>gb|CF476071.1|CF476071 RTWW2_16_D03.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_16_D03_A021 5', mRNA sequence
Length = 725
Score = 67.9 bits (34), Expect = 8e-010
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 516 gggtggcagcccatgtcccggaactggggccagaactggcagagcaactcgtacctggac 575
|||||||| || |||||||| |||||||||||||| |||||||||||| ||||| ||
Sbjct: 413 gggtggcaaccaatgtcccgcaactggggccagaattggcagagcaacagttacctcaac 472
Query: 576 aggcaggcgctctcgttccaggtcaccgccagcgacgg 613
||||| ||||| ||| |||||||| ||||||||||
Sbjct: 473 gggcagagcctctccttcaaggtcaccaccagcgacgg 510
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 405 ggcggcatccggttcaccatcaacgggcactcctacttcaacctggt 451
||||| || ||||||||| | ||||||||||| |||||||| |||||
Sbjct: 302 ggcggaattcggttcaccgtgaacgggcactcgtacttcaatctggt 348
>gb|CF479898.1|CF479898 RTWW3_12_H04.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_12_H04_A022 5', mRNA sequence
Length = 734
Score = 67.9 bits (34), Expect = 8e-010
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 516 gggtggcagcccatgtcccggaactggggccagaactggcagagcaactcgtacctggac 575
|||||||| || |||||||| |||||||||||||| |||||||||||| ||||| ||
Sbjct: 380 gggtggcaaccaatgtcccgcaactggggccagaattggcagagcaacagttacctcaac 439
Query: 576 aggcaggcgctctcgttccaggtcaccgccagcgacgg 613
||||| ||||| ||| |||||||| ||||||||||
Sbjct: 440 gggcagagcctctccttcaaggtcaccaccagcgacgg 477
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 405 ggcggcatccggttcaccatcaacgggcactcctacttcaacctggt 451
||||| || ||||||||| | ||||||||||| |||||||| |||||
Sbjct: 269 ggcggaattcggttcaccgtgaacgggcactcgtacttcaatctggt 315
>gb|CO197872.1|CO197872 GEO1_9_E12.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_9_E12_A029 5', mRNA sequence
Length = 812
Score = 67.9 bits (34), Expect = 8e-010
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 516 gggtggcagcccatgtcccggaactggggccagaactggcagagcaactcgtacctggac 575
|||||||| || |||||||| |||||||||||||| |||||||||||| ||||| ||
Sbjct: 663 gggtggcaaccaatgtcccgcaactggggccagaattggcagagcaacagttacctcaac 722
Query: 576 aggcaggcgctctcgttccaggtcaccgccagcgacgg 613
||||| ||||| ||| |||||||| ||||||||||
Sbjct: 723 gggcagagcctctccttcaaggtcaccaccagcgacgg 760
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 405 ggcggcatccggttcaccatcaacgggcactcctacttcaacctggt 451
||||| || ||||||||| | ||||||||||| |||||||| |||||
Sbjct: 552 ggcggaattcggttcaccgtgaacgggcactcgtacttcaatctggt 598
>gb|CX649869.1|CX649869 COLD1_42_B01.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_42_B01_A029 3', mRNA sequence
Length = 792
Score = 67.9 bits (34), Expect = 8e-010
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 516 gggtggcagcccatgtcccggaactggggccagaactggcagagcaactcgtacctggac 575
|||||||| || |||||||| |||||||||||||| |||||||||||| ||||| ||
Sbjct: 123 gggtggcaaccaatgtcccgcaactggggccagaattggcagagcaacagttacctcaac 182
Query: 576 aggcaggcgctctcgttccaggtcaccgccagcgacgg 613
||||| ||||| ||| |||||||| ||||||||||
Sbjct: 183 gggcagagcctctccttcaaggtcaccaccagcgacgg 220
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 405 ggcggcatccggttcaccatcaacgggcactcctacttcaacctggt 451
||||| || ||||||||| | ||||||||||| |||||||| |||||
Sbjct: 12 ggcggaattcggttcaccgtgaacgggcactcgtacttcaatctggt 58
>gb|CX649938.1|CX649938 COLD1_42_B01.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_42_B01_A029 5', mRNA sequence
Length = 862
Score = 67.9 bits (34), Expect = 8e-010
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 516 gggtggcagcccatgtcccggaactggggccagaactggcagagcaactcgtacctggac 575
|||||||| || |||||||| |||||||||||||| |||||||||||| ||||| ||
Sbjct: 646 gggtggcaaccaatgtcccgcaactggggccagaattggcagagcaacagttacctcaac 705
Query: 576 aggcaggcgctctcgttccaggtcaccgccagcgacgg 613
||||| ||||| ||| |||||||| ||||||||||
Sbjct: 706 gggcagagcctctccttcaaggtcaccaccagcgacgg 743
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 405 ggcggcatccggttcaccatcaacgggcactcctacttcaacctggt 451
||||| || ||||||||| | ||||||||||| |||||||| |||||
Sbjct: 535 ggcggaattcggttcaccgtgaacgggcactcgtacttcaatctggt 581
>gb|DR070227.1|DR070227 RTDK1_12_C03.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_12_C03_A029 3', mRNA sequence
Length = 725
Score = 67.9 bits (34), Expect = 8e-010
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 516 gggtggcagcccatgtcccggaactggggccagaactggcagagcaactcgtacctggac 575
|||||||| || |||||||| |||||||||||||| |||||||||||| ||||| ||
Sbjct: 79 gggtggcaaccaatgtcccgcaactggggccagaattggcagagcaacagttacctcaac 138
Query: 576 aggcaggcgctctcgttccaggtcaccgccagcgacgg 613
||||| ||||| ||| |||||||| ||||||||||
Sbjct: 139 gggcagagcctctccttcaaggtcaccaccagcgacgg 176
>gb|DR181356.1|DR181356 RTMNUT1_38_A01.g2_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_38_A01_A029 5', mRNA sequence
Length = 765
Score = 67.9 bits (34), Expect = 8e-010
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 516 gggtggcagcccatgtcccggaactggggccagaactggcagagcaactcgtacctggac 575
|||||||| || |||||||| |||||||||||||| |||||||||||| ||||| ||
Sbjct: 622 gggtggcaaccaatgtcccgcaactggggccagaattggcagagcaacagttacctcaac 681
Query: 576 aggcaggcgctctcgttccaggtcaccgccagcgacgg 613
||||| ||||| ||| |||||||| ||||||||||
Sbjct: 682 gggcagagcctctccttcaaggtcaccaccagcgacgg 719
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 405 ggcggcatccggttcaccatcaacgggcactcctacttcaacctggt 451
||||| || ||||||||| | ||||||||||| |||||||| |||||
Sbjct: 511 ggcggaattcggttcaccgtgaacgggcactcgtacttcaatctggt 557
>gb|U64890.1|PTU64890 Pinus taeda expansin mRNA, partial cds
Length = 923
Score = 67.9 bits (34), Expect = 8e-010
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 519 tggcagcccatgtcccggaactggggccagaactggcagagcaactcgtacctggacagg 578
|||||||||||||| || |||||||| ||||||||||| ||||| |||||||| || |
Sbjct: 530 tggcagcccatgtcacgcaactggggacagaactggcaaagcaattcgtacctcaacgga 589
Query: 579 caggcgctctcgttccaggtcaccgccagcgacggccg 616
||| || |||||||||||||| ||||||| |||||
Sbjct: 590 cagagcctttcgttccaggtcacaaccagcgatggccg 627
Score = 54.0 bits (27), Expect = 1e-005
Identities = 78/95 (82%)
Strand = Plus / Plus
Query: 234 acggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggtgc 293
||||| ||||||||||||||||| ||| ||| || |||| |||| |||| || ||||||
Sbjct: 245 acggctaccaacttctgcccgccgaacaacgctcttcccaacgacaacggtggatggtgc 304
Query: 294 aacccgccgcgcccgcacttcgacatggccgagcc 328
||||| |||| | ||| ||||| ||||| |||||
Sbjct: 305 aacccaccgctgcagcatttcgatatggcggagcc 339
>gb|U64891.1|PTU64891 Pinus taeda expansin mRNA, partial cds
Length = 919
Score = 67.9 bits (34), Expect = 8e-010
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 519 tggcagcccatgtcccggaactggggccagaactggcagagcaactcgtacctggacagg 578
|||||||||||||| || |||||||| ||||||||||| ||||| |||||||| || |
Sbjct: 530 tggcagcccatgtcacgcaactggggacagaactggcaaagcaattcgtacctcaacgga 589
Query: 579 caggcgctctcgttccaggtcaccgccagcgacggccg 616
||| || |||||||||||||| ||||||| |||||
Sbjct: 590 cagagcctttcgttccaggtcacaaccagcgatggccg 627
Score = 61.9 bits (31), Expect = 5e-008
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 234 acggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggtgc 293
||||| ||||||||||||||||| ||| ||| ||||||| |||| |||| || ||||||
Sbjct: 245 acggctaccaacttctgcccgccaaacaacgctctccccaacgacaacggtggatggtgc 304
Query: 294 aacccgccgcgcccgcacttcgacatggccgagcc 328
||||| |||| | ||| ||||| ||||| |||||
Sbjct: 305 aacccaccgctgcagcatttcgatatggcggagcc 339
>gb|U64893.1|PTU64893 Pinus taeda expansin mRNA, partial cds
Length = 891
Score = 67.9 bits (34), Expect = 8e-010
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 519 tggcagcccatgtcccggaactggggccagaactggcagagcaactcgtacctggacagg 578
|||||||||||||| || |||||||| ||||||||||| |||||||| ||||| || |
Sbjct: 530 tggcagcccatgtcacgcaactggggacagaactggcaaagcaactcctacctcaacgga 589
Query: 579 caggcgctctcgttccaggtcaccgccagcgacggccg 616
||| || |||||||||||||| ||||||| |||||
Sbjct: 590 cagagcctttcgttccaggtcacaaccagcgatggccg 627
Score = 61.9 bits (31), Expect = 5e-008
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 234 acggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggtgc 293
||||| ||||||||||||||||| ||| ||| ||||||| |||| |||| || ||||||
Sbjct: 245 acggctaccaacttctgcccgccaaacaacgctctccccaacgacaacggtggatggtgc 304
Query: 294 aacccgccgcgcccgcacttcgacatggccgagcc 328
||||| |||| | ||| ||||| ||||| |||||
Sbjct: 305 aacccaccgctgcagcatttcgatatggcggagcc 339
>gb|AF085330.1|AF085330 Pinus taeda expansin mRNA, complete cds
Length = 998
Score = 67.9 bits (34), Expect = 8e-010
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 519 tggcagcccatgtcccggaactggggccagaactggcagagcaactcgtacctggacagg 578
|||||||||||||| || |||||||| ||||||||||| ||||| |||||||| || |
Sbjct: 681 tggcagcccatgtcacgcaactggggacagaactggcaaagcaattcgtacctcaacgga 740
Query: 579 caggcgctctcgttccaggtcaccgccagcgacggccg 616
||| || |||||||||||||| ||||||| |||||
Sbjct: 741 cagagcctttcgttccaggtcacaaccagcgatggccg 778
Score = 54.0 bits (27), Expect = 1e-005
Identities = 78/95 (82%)
Strand = Plus / Plus
Query: 234 acggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggtgc 293
||||| |||||||||||||| || ||| ||| ||||||| |||| |||| || ||||||
Sbjct: 396 acggctaccaacttctgcccaccaaacaacgctctccccaacgacaacggtggatggtgc 455
Query: 294 aacccgccgcgcccgcacttcgacatggccgagcc 328
||||| |||| | ||| ||||| ||||| |||||
Sbjct: 456 aacccaccgctgcagcatttcgatatggcggagcc 490
>gb|U64892.1|PTU64892 Pinus taeda expansin mRNA, partial cds
Length = 923
Score = 67.9 bits (34), Expect = 8e-010
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 519 tggcagcccatgtcccggaactggggccagaactggcagagcaactcgtacctggacagg 578
|||||||||||||| || |||||||| ||||||||||| ||||| |||||||| || |
Sbjct: 530 tggcagcccatgtcacgcaactggggacagaactggcaaagcaattcgtacctcaacgga 589
Query: 579 caggcgctctcgttccaggtcaccgccagcgacggccg 616
||| || |||||||||||||| ||||||| |||||
Sbjct: 590 cagagcctttcgttccaggtcacaaccagcgatggccg 627
Score = 61.9 bits (31), Expect = 5e-008
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 234 acggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggtgc 293
||||| ||||||||||||||||| ||| ||| ||||||| |||| |||| || ||||||
Sbjct: 245 acggctaccaacttctgcccgccaaacaacgctctccccaacgacaacggtggatggtgc 304
Query: 294 aacccgccgcgcccgcacttcgacatggccgagcc 328
||||| |||| | ||| ||||| ||||| |||||
Sbjct: 305 aacccaccgctgcagcatttcgatatggcggagcc 339
>gb|CF391855.1|CF391855 RTDR3_10_C05.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_10_C05_A022 5', mRNA
sequence
Length = 765
Score = 65.9 bits (33), Expect = 3e-009
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 519 tggcagcccatgtcccggaactggggccagaactggcagagcaac 563
|||||||| |||||||||||||||||||| || ||||||||||||
Sbjct: 605 tggcagccaatgtcccggaactggggccaaaattggcagagcaac 649
>gb|CN784348.1|CN784348 EST783039 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAAK45 5' end, mRNA sequence
Length = 778
Score = 65.9 bits (33), Expect = 3e-009
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 519 tggcagcccatgtcccggaactggggccagaactggcagagcaac 563
|||||||| |||||||||||||||||||| || ||||||||||||
Sbjct: 584 tggcagccaatgtcccggaactggggccaaaattggcagagcaac 628
>gb|CX650764.1|CX650764 COLD1_48_A05.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_48_A05_A029 3', mRNA sequence
Length = 650
Score = 65.9 bits (33), Expect = 3e-009
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 519 tggcagcccatgtcccggaactggggccagaactggcagagcaac 563
|||||||| |||||||||||||||||||| || ||||||||||||
Sbjct: 394 tggcagccaatgtcccggaactggggccaaaattggcagagcaac 350
>gb|DR688987.1|DR688987 EST1079073 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACC87 3' end, mRNA sequence
Length = 772
Score = 65.9 bits (33), Expect = 3e-009
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 519 tggcagcccatgtcccggaactggggccagaactggcagagcaac 563
|||||||| |||||||||||||||||||| || ||||||||||||
Sbjct: 638 tggcagccaatgtcccggaactggggccaaaattggcagagcaac 682
>gb|DR692635.1|DR692635 EST1082723 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADO50 3' end, mRNA sequence
Length = 902
Score = 65.9 bits (33), Expect = 3e-009
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 519 tggcagcccatgtcccggaactggggccagaactggcagagcaac 563
|||||||| |||||||||||||||||||| || ||||||||||||
Sbjct: 641 tggcagccaatgtcccggaactggggccaaaattggcagagcaac 685
>gb|DT625757.1|DT625757 EST1157681 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMA338 5' end, mRNA sequence
Length = 817
Score = 65.9 bits (33), Expect = 3e-009
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 519 tggcagcccatgtcccggaactggggccagaactggcagagcaac 563
|||||||| |||||||||||||||||||| || ||||||||||||
Sbjct: 584 tggcagccaatgtcccggaactggggccaaaattggcagagcaac 628
>gb|DR070312.1|DR070312 RTDK1_12_C03.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_12_C03_A029 5', mRNA sequence
Length = 710
Score = 63.9 bits (32), Expect = 1e-008
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 516 gggtggcagcccatgtcccggaactggggccagaactggcagagcaac 563
|||||||| || |||||||| |||||||||||||| ||||||||||||
Sbjct: 585 gggtggcaaccaatgtcccgcaactggggccagaattggcagagcaac 632
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 405 ggcggcatccggttcaccatcaacgggcactcctacttcaacctggt 451
||||| || ||||||||| | ||||||||||| |||||||| |||||
Sbjct: 474 ggcggaattcggttcaccgtgaacgggcactcgtacttcaatctggt 520
>gb|DR097316.1|DR097316 STRR1_33_H05.g3_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_33_H05_A033 5', mRNA sequence
Length = 794
Score = 63.9 bits (32), Expect = 1e-008
Identities = 80/96 (83%)
Strand = Plus / Minus
Query: 519 tggcagcccatgtcccggaactggggccagaactggcagagcaactcgtacctggacagg 578
|||||| ||||||| || |||||||| ||||||||||| |||||||| |||||| || |
Sbjct: 320 tggcaggccatgtcacgcaactggggacagaactggcaaagcaactcttacctgaacgga 261
Query: 579 caggcgctctcgttccaggtcaccgccagcgacggc 614
||| || || ||||| |||||| |||||||||||
Sbjct: 260 cagagcctatccttccaagtcaccaccagcgacggc 225
Score = 48.1 bits (24), Expect = 7e-004
Identities = 75/92 (81%)
Strand = Plus / Minus
Query: 237 gccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggtgcaac 296
|||||||||||||||||||| ||| | | || |||| |||| ||||||| ||||||||
Sbjct: 602 gccaccaacttctgcccgccaaacaatgctcttcccaacgacaacggcgggtggtgcaat 543
Query: 297 ccgccgcgcccgcacttcgacatggccgagcc 328
| || | || ||||||||| ||||| |||||
Sbjct: 542 ctacccctccagcacttcgatatggctgagcc 511
>gb|CO368672.1|CO368672 RTK1_42_C07.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_42_C07_A029 3', mRNA sequence
Length = 839
Score = 61.9 bits (31), Expect = 5e-008
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 528 atgtcccggaactggggccagaactggcagagcaactcgtacctggacaggcaggcgctc 587
|||||||| |||||||| ||||| |||||||||||||| || || | ||||| | |||
Sbjct: 153 atgtcccgcaactggggacagaattggcagagcaactcctatttgaatgggcagactctc 212
Query: 588 tcgttccaggtcaccgccagcga 610
|| |||||||||||| |||||||
Sbjct: 213 tctttccaggtcaccaccagcga 235
>gb|CO368748.1|CO368748 RTK1_42_C07.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_42_C07_A029 5', mRNA sequence
Length = 700
Score = 61.9 bits (31), Expect = 5e-008
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 528 atgtcccggaactggggccagaactggcagagcaactcgtacctggacaggcaggcgctc 587
|||||||| |||||||| ||||| |||||||||||||| || || | ||||| | |||
Sbjct: 507 atgtcccgcaactggggacagaattggcagagcaactcctatttgaatgggcagactctc 566
Query: 588 tcgttccaggtcaccgccagcga 610
|| |||||||||||| |||||||
Sbjct: 567 tctttccaggtcaccaccagcga 589
>gb|DT624311.1|DT624311 EST1158586 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAD27 5' end, mRNA sequence
Length = 886
Score = 61.9 bits (31), Expect = 5e-008
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 528 atgtcccggaactggggccagaactggcagagcaactcgtacctggacaggcaggcgctc 587
|||||||| |||||||| ||||| |||||||||||||| || || | ||||| | |||
Sbjct: 660 atgtcccgcaactggggacagaattggcagagcaactcctatttgaatgggcagactctc 719
Query: 588 tcgttccaggtcaccgccagcga 610
|| |||||||||||| |||||||
Sbjct: 720 tctttccaggtcaccaccagcga 742
Score = 42.1 bits (21), Expect = 0.044
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 417 ttcaccatcaacgggcactcctacttcaa 445
||||| ||||| |||||||||||||||||
Sbjct: 549 ttcacgatcaatgggcactcctacttcaa 577
>gb|BG039378.1|BG039378 NXSI_098_D11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_098_D11 5' similar to Arabidopsis thaliana
sequence At3g03220 putative expansin precursor see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 544
Score = 58.0 bits (29), Expect = 7e-007
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 231 gtcacggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctgg 290
||||| ||||| || ||||||||||| ||||||||||| || | ||||| ||||| |||
Sbjct: 93 gtcacagccacgaatttctgcccgccgaactacggcctgcctggggacgatggcgggtgg 152
Query: 291 tgcaacccgccgcgcccgcacttcg 315
||||| ||||| |||| ||| ||||
Sbjct: 153 tgcaatccgcctcgccagcatttcg 177
>gb|CF399941.1|CF399941 RTWW1_2_C11.b1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_2_C11_A015 3', mRNA sequence
Length = 668
Score = 58.0 bits (29), Expect = 7e-007
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 519 tggcagcccatgtcccggaactggggccagaactggcagagcaactcgtacct 571
|||||||||||||| || |||||||| ||||||||||| ||||| || |||||
Sbjct: 231 tggcagcccatgtcacgcaactggggacagaactggcaaagcaattcctacct 283
Score = 44.1 bits (22), Expect = 0.011
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 393 tgcgtgaagaagggcggcatccggttcaccatcaacgggcactcctacttcaacctggtg 452
||||||| |||||| || || || |||||| | || || ||||| |||||||||||||||
Sbjct: 105 tgcgtgaggaagggaggaattcgtttcaccgtgaatggccactcatacttcaacctggtg 164
Query: 453 ct 454
||
Sbjct: 165 ct 166
>gb|CF400653.1|CF400653 RTWW1_6_A01.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_6_A01_A015 5', mRNA sequence
Length = 559
Score = 58.0 bits (29), Expect = 7e-007
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 231 gtcacggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctgg 290
||||| ||||| || ||||||||||| ||||||||||| || | ||||| ||||| |||
Sbjct: 138 gtcacagccacgaatttctgcccgccgaactacggcctgcctggggacgatggcgggtgg 197
Query: 291 tgcaacccgccgcgcccgcacttcg 315
||||| ||||| |||| ||| ||||
Sbjct: 198 tgcaatccgcctcgccagcatttcg 222
>gb|CF475910.1|CF475910 RTWW2_15_D07.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_15_D07_A021 5', mRNA sequence
Length = 664
Score = 58.0 bits (29), Expect = 7e-007
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 231 gtcacggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctgg 290
||||| ||||| || ||||||||||| ||||||||||| || | ||||| ||||| |||
Sbjct: 62 gtcacagccacgaatttctgcccgccgaactacggcctgcctggggacgatggcgggtgg 121
Query: 291 tgcaacccgccgcgcccgcacttcg 315
||||| ||||| |||| ||| ||||
Sbjct: 122 tgcaatccgcctcgccagcatttcg 146
>gb|CO172418.1|CO172418 NDL1_29_D02.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_29_D02_A029 5', mRNA sequence
Length = 728
Score = 58.0 bits (29), Expect = 7e-007
Identities = 71/85 (83%)
Strand = Plus / Minus
Query: 231 gtcacggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctgg 290
||||| ||||| || ||||||||||| ||||||||||| || | ||||| ||||| |||
Sbjct: 642 gtcacagccacgaatttctgcccgccgaactacggcctgcctggggacgatggcgggtgg 583
Query: 291 tgcaacccgccgcgcccgcacttcg 315
||||| ||||| |||| ||| ||||
Sbjct: 582 tgcaatccgcctcgccagcatttcg 558
>gb|CX650634.1|CX650634 COLD1_47_B12.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_47_B12_A029 3', mRNA sequence
Length = 711
Score = 58.0 bits (29), Expect = 7e-007
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 519 tggcagcccatgtcccggaactggggccagaactggcagagcaactcgtacct 571
|||||||||||||| || |||||||| ||||||||||| ||||| || |||||
Sbjct: 177 tggcagcccatgtcacgcaactggggacagaactggcaaagcaattcctacct 229
Score = 44.1 bits (22), Expect = 0.011
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 393 tgcgtgaagaagggcggcatccggttcaccatcaacgggcactcctacttcaacctggtg 452
||||||| |||||| || || || |||||| | || || ||||| |||||||||||||||
Sbjct: 51 tgcgtgaggaagggaggaattcgtttcaccgtgaatggccactcatacttcaacctggtg 110
Query: 453 ct 454
||
Sbjct: 111 ct 112
>gb|CX650703.1|CX650703 COLD1_47_B12.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_47_B12_A029 5', mRNA sequence
Length = 629
Score = 58.0 bits (29), Expect = 7e-007
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 519 tggcagcccatgtcccggaactggggccagaactggcagagcaactcgtacct 571
|||||||||||||| || |||||||| ||||||||||| ||||| || |||||
Sbjct: 459 tggcagcccatgtcacgcaactggggacagaactggcaaagcaattcctacct 511
Score = 54.0 bits (27), Expect = 1e-005
Identities = 78/95 (82%)
Strand = Plus / Plus
Query: 234 acggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggtgc 293
||||| || |||||||||||||| ||| ||| ||||||| |||| |||| || ||||||
Sbjct: 174 acggctactaacttctgcccgccaaacaacgctctccccaacgacaacggtggatggtgc 233
Query: 294 aacccgccgcgcccgcacttcgacatggccgagcc 328
||||| |||| | ||| ||||| ||||| |||||
Sbjct: 234 aacccaccgctgcagcatttcgatatggcggagcc 268
Score = 44.1 bits (22), Expect = 0.011
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 393 tgcgtgaagaagggcggcatccggttcaccatcaacgggcactcctacttcaacctggtg 452
||||||| |||||| || || || |||||| | || || ||||| |||||||||||||||
Sbjct: 333 tgcgtgaggaagggaggaattcgtttcaccgtgaatggccactcatacttcaacctggtg 392
Query: 453 ct 454
||
Sbjct: 393 ct 394
>gb|DR055360.1|DR055360 RTCA1_23_E11.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_23_E11_A029 3', mRNA sequence
Length = 688
Score = 58.0 bits (29), Expect = 7e-007
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 519 tggcagcccatgtcccggaactggggccagaactggcagagcaactcgtacct 571
||||| ||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 58 tggcaacccatgtccaggaactggggagccaactggcagagcaactcgtacct 110
>gb|DR055518.1|DR055518 RTCA1_24_E10.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_24_E10_A029 3', mRNA sequence
Length = 820
Score = 58.0 bits (29), Expect = 7e-007
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 519 tggcagcccatgtcccggaactggggccagaactggcagagcaactcgtacct 571
||||| ||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 189 tggcaacccatgtccaggaactggggagccaactggcagagcaactcgtacct 241
>gb|DR070635.1|DR070635 RTDK1_14_D09.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_14_D09_A029 5', mRNA sequence
Length = 657
Score = 58.0 bits (29), Expect = 7e-007
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 519 tggcagcccatgtcccggaactggggccagaactggcagagcaactcgtacct 571
||||| ||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 21 tggcaacccatgtccaggaactggggagccaactggcagagcaactcgtacct 73
>gb|DR692432.1|DR692432 EST1082520 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADM10 3' end, mRNA sequence
Length = 820
Score = 58.0 bits (29), Expect = 7e-007
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 519 tggcagcccatgtcccggaactggggccagaactggcagagcaactcgtacct 571
||||| ||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 699 tggcaacccatgtccaggaactggggagccaactggcagagcaactcgtacct 751
>gb|DR011201.1|DR011201 HEAT1_4_E06.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_4_E06_A029 3', mRNA sequence
Length = 752
Score = 56.0 bits (28), Expect = 3e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 519 tggcagcccatgtcccggaactggggccagaactggcagagcaa 562
|||||||||||||| || |||||||| ||||||||||| |||||
Sbjct: 251 tggcagcccatgtcacgcaactggggacagaactggcaaagcaa 294
>gb|DR047687.1|DR047687 RTBOR1_2_F07.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_2_F07_A029 5', mRNA sequence
Length = 689
Score = 56.0 bits (28), Expect = 3e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 519 tggcagcccatgtcccggaactggggccagaactggcagagcaa 562
|||||||||||||| || |||||||| ||||||||||| |||||
Sbjct: 130 tggcagcccatgtcacgcaactggggacagaactggcaaagcaa 173
>gb|DR120161.1|DR120161 RTMG1_27_H07.g2_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_27_H07_A029 5', mRNA sequence
Length = 693
Score = 56.0 bits (28), Expect = 3e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 519 tggcagcccatgtcccggaactggggccagaactggcagagcaa 562
|||||||||||||| || |||||||| ||||||||||| |||||
Sbjct: 620 tggcagcccatgtcacgcaactggggacagaactggcaaagcaa 663
>gb|DR180723.1|DR180723 RTMNUT1_34_A06.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_34_A06_A029 5', mRNA sequence
Length = 773
Score = 56.0 bits (28), Expect = 3e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 519 tggcagcccatgtcccggaactggggccagaactggcagagcaa 562
|||||||||||||| || |||||||| ||||||||||| |||||
Sbjct: 597 tggcagcccatgtcacgcaactggggacagaactggcaaagcaa 640
>gb|CF400025.1|CF400025 RTWW1_2_C11.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_2_C11_A015 5', mRNA sequence
Length = 560
Score = 54.0 bits (27), Expect = 1e-005
Identities = 78/95 (82%)
Strand = Plus / Plus
Query: 234 acggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggtgc 293
||||| || |||||||||||||| ||| ||| ||||||| |||| |||| || ||||||
Sbjct: 156 acggctactaacttctgcccgccaaacaacgctctccccaacgacaacggtggatggtgc 215
Query: 294 aacccgccgcgcccgcacttcgacatggccgagcc 328
||||| |||| | ||| ||||| ||||| |||||
Sbjct: 216 aacccaccgctgcagcatttcgatatggcggagcc 250
Score = 44.1 bits (22), Expect = 0.011
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 393 tgcgtgaagaagggcggcatccggttcaccatcaacgggcactcctacttcaacctggtg 452
||||||| |||||| || || || |||||| | || || ||||| |||||||||||||||
Sbjct: 422 tgcgtgaggaagggaggaattcgtttcaccgtgaatggccactcatacttcaacctggtg 481
Query: 453 ct 454
||
Sbjct: 482 ct 483
>gb|CF663902.1|CF663902 RTCNT1_5_H12.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_5_H12_A029 5', mRNA sequence
Length = 699
Score = 54.0 bits (27), Expect = 1e-005
Identities = 78/95 (82%)
Strand = Plus / Plus
Query: 234 acggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggtgc 293
||||| || |||||||||||||| ||| ||| ||||||| |||| |||| || ||||||
Sbjct: 397 acggctactaacttctgcccgccaaacaacgctctccccaacgacaacggtggatggtgc 456
Query: 294 aacccgccgcgcccgcacttcgacatggccgagcc 328
||||| |||| | ||| ||||| ||||| |||||
Sbjct: 457 aacccaccgctgcagcatttcgatatggcggagcc 491
Score = 44.1 bits (22), Expect = 0.011
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 393 tgcgtgaagaagggcggcatccggttcaccatcaacgggcactcctacttcaacctggtg 452
||||||| |||||| || || || |||||| | || || ||||| |||||||||||||||
Sbjct: 556 tgcgtgaggaagggaggaattcgtttcaccgtgaatggccactcatacttcaacctggtg 615
Query: 453 ct 454
||
Sbjct: 616 ct 617
>gb|CF666895.1|CF666895 RTCNT1_26_G11.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_26_G11_A029 5', mRNA sequence
Length = 779
Score = 54.0 bits (27), Expect = 1e-005
Identities = 75/91 (82%)
Strand = Plus / Plus
Query: 232 tcacggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggt 291
||||||| ||||| ||||||||||| || |||| |||| | | ||||| ||||| ||||
Sbjct: 341 tcacggcaaccaatttctgcccgcctaattacgccctcgcaaatgacgatggcgggtggt 400
Query: 292 gcaacccgccgcgcccgcacttcgacatggc 322
|||| || || ||| |||||||||||||||
Sbjct: 401 gcaatcctcctcgcgagcacttcgacatggc 431
>gb|CO171305.1|CO171305 NDL1_20_C09.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_20_C09_A029 5', mRNA sequence
Length = 776
Score = 54.0 bits (27), Expect = 1e-005
Identities = 75/91 (82%)
Strand = Plus / Plus
Query: 232 tcacggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggt 291
||||||| ||||| ||||||||||| || |||| |||| | | ||||| ||||| ||||
Sbjct: 338 tcacggcaaccaatttctgcccgcctaattacgccctcgcaaatgacgatggcgggtggt 397
Query: 292 gcaacccgccgcgcccgcacttcgacatggc 322
|||| || || ||| |||||||||||||||
Sbjct: 398 gcaatcctcctcgcgagcacttcgacatggc 428
>gb|CO369598.1|CO369598 RTK1_48_F01.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_48_F01_A029 3', mRNA sequence
Length = 820
Score = 54.0 bits (27), Expect = 1e-005
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 528 atgtcccggaactggggccagaactggcagagcaactcgtacctggacaggcaggcgctc 587
|||||||| |||||||| ||||| |||||||||||||| || || | ||||| |||
Sbjct: 366 atgtcccgcaactggggacagaattggcagagcaactcctatttgaatgggcagagtctc 307
Query: 588 tcgttccaggtcaccgccagcga 610
|| |||||||||||| |||||||
Sbjct: 306 tccttccaggtcaccaccagcga 284
>gb|CO369680.1|CO369680 RTK1_48_F01.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_48_F01_A029 5', mRNA sequence
Length = 697
Score = 54.0 bits (27), Expect = 1e-005
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 528 atgtcccggaactggggccagaactggcagagcaactcgtacctggacaggcaggcgctc 587
|||||||| |||||||| ||||| |||||||||||||| || || | ||||| |||
Sbjct: 580 atgtcccgcaactggggacagaattggcagagcaactcctatttgaatgggcagagtctc 521
Query: 588 tcgttccaggtcaccgccagcga 610
|| |||||||||||| |||||||
Sbjct: 520 tccttccaggtcaccaccagcga 498
>gb|CV035793.1|CV035793 RTNACL1_42_B01.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_42_B01_A029 5', mRNA sequence
Length = 767
Score = 54.0 bits (27), Expect = 1e-005
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 390 ccgtgcgtgaagaagggcggcatccggttcaccatcaacgggcactcctacttcaacct 448
|||||| ||| ||||||||| || || |||||||||| ||| ||||| |||||||||||
Sbjct: 684 ccgtgcttgaggaagggcggaattcgcttcaccatcaccggccactcatacttcaacct 626
Score = 48.1 bits (24), Expect = 7e-004
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 519 tggcagcccatgtcccggaactggggccagaactggcagagcaa 562
|||||||| ||||| || |||||||| ||||||||||| |||||
Sbjct: 555 tggcagcctatgtcacgcaactggggacagaactggcaaagcaa 512
>gb|CV144435.1|CV144435 EST855644 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPID557 5' end, mRNA sequence
Length = 769
Score = 54.0 bits (27), Expect = 1e-005
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 528 atgtcccggaactggggccagaactggcagagcaactcgtacctggacaggcaggcgctc 587
|||||||| |||||||| ||||| |||||||||||||| || || | ||||| |||
Sbjct: 641 atgtcccgcaactggggacagaattggcagagcaactcctatttgaatgggcagagtctc 700
Query: 588 tcgttccaggtcaccgccagcga 610
|| |||||||||||| |||||||
Sbjct: 701 tctttccaggtcaccaccagcga 723
Score = 42.1 bits (21), Expect = 0.044
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 417 ttcaccatcaacgggcactcctacttcaa 445
||||| ||||| |||||||||||||||||
Sbjct: 530 ttcacgatcaatgggcactcctacttcaa 558
>gb|DR071171.1|DR071171 RTDK1_18_C12.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_18_C12_A029 3', mRNA sequence
Length = 808
Score = 54.0 bits (27), Expect = 1e-005
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 390 ccgtgcgtgaagaagggcggcatccggttcaccatcaacgggcactcctacttcaacct 448
|||||| ||| ||||||||| || || |||||||||| ||| ||||| |||||||||||
Sbjct: 199 ccgtgcttgaggaagggcggaattcgcttcaccatcaccggccactcatacttcaacct 257
Score = 48.1 bits (24), Expect = 7e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 519 tggcagcccatgtcccggaactggggccagaactggcagagcaa 562
|||||||| ||||| || |||||||| ||||||||||| |||||
Sbjct: 328 tggcagcctatgtcacgcaactggggacagaactggcaaagcaa 371
>gb|DT624714.1|DT624714 EST1159049 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAI31 5' end, mRNA sequence
Length = 844
Score = 54.0 bits (27), Expect = 1e-005
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 528 atgtcccggaactggggccagaactggcagagcaactcgtacctggacaggcaggcgctc 587
|||||||| |||||||| ||||| |||||||||||||| || || | ||||| |||
Sbjct: 641 atgtcccgcaactggggacagaattggcagagcaactcctatttgaatgggcagagtctc 700
Query: 588 tcgttccaggtcaccgccagcga 610
|| |||||||||||| |||||||
Sbjct: 701 tctttccaggtcaccaccagcga 723
Score = 42.1 bits (21), Expect = 0.044
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 417 ttcaccatcaacgggcactcctacttcaa 445
||||| ||||| |||||||||||||||||
Sbjct: 530 ttcacgatcaatgggcactcctacttcaa 558
>gb|CF477384.1|CF477384 RTWW3_7_A01.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_7_A01_A022 5', mRNA sequence
Length = 715
Score = 52.0 bits (26), Expect = 5e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 528 atgtcccggaactggggccagaactggcagagcaactc 565
|||||||| |||||||| ||||| ||||||||||||||
Sbjct: 653 atgtcccgcaactggggacagaattggcagagcaactc 690
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 417 ttcaccatcaacgggcactcctacttcaacctggtgct 454
||||| ||||| ||||||||||||||||| |||||||
Sbjct: 542 ttcacgatcaatgggcactcctacttcaatttggtgct 579
>gb|CO361349.1|CO361349 NDL2_4_G08.b1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_4_G08_A029 3', mRNA sequence
Length = 819
Score = 52.0 bits (26), Expect = 5e-005
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 246 ttctgcccgcccaactacggcctccccagcgacgacggcggctggtgcaacccgccgcgc 305
||||||||||| ||||||||||| || | ||||| ||||| |||||||| ||||| |||
Sbjct: 35 ttctgcccgccgaactacggcctgcctggggacgatggcgggtggtgcaatccgcctcgc 94
Query: 306 ccgcacttcg 315
| ||| ||||
Sbjct: 95 cagcatttcg 104
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 80,865
Number of Sequences: 355925
Number of extensions: 80865
Number of successful extensions: 23325
Number of sequences better than 0.5: 186
Number of HSP's better than 0.5 without gapping: 183
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 22650
Number of HSP's gapped (non-prelim): 641
length of query: 1022
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1003
effective length of database: 210,514,662
effective search space: 211146205986
effective search space used: 211146205986
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)