BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3671909.2.1
(767 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX649036.1|CX649036 COLD1_32_B09.g1_A029 Root cold Pinus... 60 1e-007
gb|DR016492.1|DR016492 STRS1_10_A08.g1_A034 Shoot tip pitch... 60 1e-007
gb|AA556941.1|AA556941 783 Loblolly pine C Pinus taeda cDNA... 58 6e-007
gb|AI812771.1|AI812771 18H4 Pine Lambda Zap Xylem library P... 58 6e-007
gb|AI812842.1|AI812842 20F6 Pine Lambda Zap Xylem library P... 58 6e-007
gb|AW042602.1|AW042602 ST23G12 Pine TriplEx shoot tip libra... 58 6e-007
gb|AW290024.1|AW290024 NXNV009G04F Nsf Xylem Normal wood Ve... 58 6e-007
gb|BX251949.1|BX251949 BX251949 Pinus pinaster differenciat... 58 6e-007
gb|BX252751.1|BX252751 BX252751 Pinus pinaster differenciat... 58 6e-007
gb|BX252947.1|BX252947 BX252947 Pinus pinaster differenciat... 58 6e-007
gb|BX254605.1|BX254605 BX254605 Pinus pinaster differenciat... 58 6e-007
gb|BX254863.1|BX254863 BX254863 Pinus pinaster differenciat... 58 6e-007
gb|BX254943.1|BX254943 BX254943 Pinus pinaster differenciat... 58 6e-007
gb|BE187484.1|BE187484 NXNV_98_G10_F Nsf Xylem Normal wood ... 58 6e-007
gb|BF221256.1|BF221256 NXCI_156_F01_F NXCI (Nsf Xylem Compr... 58 6e-007
gb|BF609556.1|BF609556 NXSI_046_B06_F NXSI (Nsf Xylem Side ... 58 6e-007
gb|BF610527.1|BF610527 NXSI_059_F06_F NXSI (Nsf Xylem Side ... 58 6e-007
gb|BF777569.1|BF777569 NXSI_070_A12_F NXSI (Nsf Xylem Side ... 58 6e-007
gb|BF778666.1|BF778666 NXSI_090_D08_F NXSI (Nsf Xylem Side ... 58 6e-007
gb|BG039758.1|BG039758 NXSI_103_F12_F NXSI (Nsf Xylem Side ... 58 6e-007
gb|BG040113.1|BG040113 NXSI_106_F02_F NXSI (Nsf Xylem Side ... 58 6e-007
gb|BG275289.1|BG275289 NXSI_142_A01_F NXSI (Nsf Xylem Side ... 58 6e-007
gb|BG275516.1|BG275516 NXSI_139_E05_F NXSI (Nsf Xylem Side ... 58 6e-007
gb|BG276019.1|BG276019 NXSI_147_E12_F NXSI (Nsf Xylem Side ... 58 6e-007
gb|BI644029.1|BI644029 NXPV_127_B12_F NXPV (Nsf Xylem Plani... 58 6e-007
gb|BM427766.1|BM427766 NXRV_003_A06_F NXRV (Nsf Xylem Root ... 58 6e-007
gb|BQ696484.1|BQ696484 NXPV_041_G06_F NXPV (Nsf Xylem Plani... 58 6e-007
gb|BQ699307.1|BQ699307 NXRV126_A09_F NXRV (Nsf Xylem Root w... 58 6e-007
gb|BQ699654.1|BQ699654 NXRV125_B02_F NXRV (Nsf Xylem Root w... 58 6e-007
gb|BQ699741.1|BQ699741 NXRV128_C09_F NXRV (Nsf Xylem Root w... 58 6e-007
gb|BQ701255.1|BQ701255 NXSI_061_D08_F NXSI (Nsf Xylem Side ... 58 6e-007
gb|BQ701829.1|BQ701829 NXSI_121_A07_F NXSI (Nsf Xylem Side ... 58 6e-007
gb|BQ702414.1|BQ702414 NXSI_128_D03_F NXSI (Nsf Xylem Side ... 58 6e-007
gb|CD016854.1|CD016854 NXCI_062_C09_F NXCI (Nsf Xylem Compr... 58 6e-007
gb|CD021604.1|CD021604 NXNV_156_C06_F Nsf Xylem Normal wood... 58 6e-007
gb|CD026691.1|CD026691 NXNV009G04 Nsf Xylem Normal wood Ver... 58 6e-007
gb|CF385572.1|CF385572 RTDR1_4_A06.g1_A015 Loblolly pine ro... 58 6e-007
gb|CF387165.1|CF387165 RTDR1_11_A09.b1_A015 Loblolly pine r... 58 6e-007
gb|CF387281.1|CF387281 RTDR1_11_A09.g1_A015 Loblolly pine r... 58 6e-007
gb|CF387668.1|CF387668 RTDR1_19_A10.b1_A015 Loblolly pine r... 58 6e-007
gb|CF389398.1|CF389398 RTDR2_7_E10.b1_A021 Loblolly pine ro... 58 6e-007
gb|CF394836.1|CF394836 RTDS2_8_G08.b1_A021 Drought-stressed... 58 6e-007
gb|CF394939.1|CF394939 RTDS2_8_G08.g1_A021 Drought-stressed... 58 6e-007
gb|CF395347.1|CF395347 RTDS2_11_B10.b1_A021 Drought-stresse... 58 6e-007
gb|CF395486.1|CF395486 RTDS2_11_B10.g1_A021 Drought-stresse... 58 6e-007
gb|CF395618.1|CF395618 RTDS2_12_H02.g1_A021 Drought-stresse... 58 6e-007
gb|CF398102.1|CF398102 RTDS3_21_C08.b1_A022 Drought-stresse... 58 6e-007
gb|CF399422.1|CF399422 RTDS3_28_D06.g1_A022 Drought-stresse... 58 6e-007
gb|CF399839.1|CF399839 RTWW1_1_H11.g1_A015 Well-watered lob... 58 6e-007
gb|CF400053.1|CF400053 RTWW1_2_B07.g1_A015 Well-watered lob... 58 6e-007
gb|CF400820.1|CF400820 RTWW1_8_G10.b1_A015 Well-watered lob... 58 6e-007
gb|CF400856.1|CF400856 RTWW1_8_G10.g1_A015 Well-watered lob... 58 6e-007
gb|CF401106.1|CF401106 RTWW1_10_F06.b1_A015 Well-watered lo... 58 6e-007
gb|CF401178.1|CF401178 RTWW1_10_F06.g1_A015 Well-watered lo... 58 6e-007
gb|CF402046.1|CF402046 RTWW1_16_D12.g1_A015 Well-watered lo... 58 6e-007
gb|CF402326.1|CF402326 RTWW1_19_E10.g1_A015 Well-watered lo... 58 6e-007
gb|CF402842.1|CF402842 RTWW1_23_D03.b1_A015 Well-watered lo... 58 6e-007
gb|CF470397.1|CF470397 RTDS1_17_C04.b1_A015 Drought-stresse... 58 6e-007
gb|CF470481.1|CF470481 RTDS1_17_C04.g1_A015 Drought-stresse... 58 6e-007
gb|CF471221.1|CF471221 RTDS1_2_D09.b1_A015 Drought-stressed... 58 6e-007
gb|CF471315.1|CF471315 RTDS1_2_D09.g1_A015 Drought-stressed... 58 6e-007
gb|CF471858.1|CF471858 RTDS1_7_G12.b1_A015 Drought-stressed... 58 6e-007
gb|CF472357.1|CF472357 RTDS1_9_G03.b1_A015 Drought-stressed... 58 6e-007
gb|CF472453.1|CF472453 RTDS1_9_G03.g1_A015 Drought-stressed... 58 6e-007
gb|CF473017.1|CF473017 RTDS1_1_A10.b1_A015 Drought-stressed... 58 6e-007
gb|CF473126.1|CF473126 RTDS1_1_A10.g1_A015 Drought-stressed... 58 6e-007
gb|CF473488.1|CF473488 RTWW2_3_G09.b2_A021 Well-watered lob... 58 6e-007
gb|CF476223.1|CF476223 RTWW2_21_H07.g1_A021 Well-watered lo... 58 6e-007
gb|CF476268.1|CF476268 RTWW2_22_D04.b1_A021 Well-watered lo... 58 6e-007
gb|CF477426.1|CF477426 RTWW3_7_H02.g1_A022 Well-watered lob... 58 6e-007
gb|CF477477.1|CF477477 RTWW3_8_G12.b1_A022 Well-watered lob... 58 6e-007
gb|CF477602.1|CF477602 RTWW3_8_G12.g1_A022 Well-watered lob... 58 6e-007
gb|CF664502.1|CF664502 RTCNT1_10_E07.b1_A029 Root control P... 58 6e-007
gb|CF664576.1|CF664576 RTCNT1_10_E07.g1_A029 Root control P... 58 6e-007
gb|CF665311.1|CF665311 RTCNT1_15_F02.b1_A029 Root control P... 58 6e-007
gb|CF666119.1|CF666119 RTCNT1_21_A01.b1_A029 Root control P... 58 6e-007
gb|CF669309.1|CF669309 RTCNT1_42_F10.b1_A029 Root control P... 58 6e-007
gb|CF669355.1|CF669355 RTCNT1_42_F10.g1_A029 Root control P... 58 6e-007
gb|CF669934.1|CF669934 RTCNT1_47_B04.b1_A029 Root control P... 58 6e-007
gb|CF670004.1|CF670004 RTCNT1_47_B04.g1_A029 Root control P... 58 6e-007
gb|CF670072.1|CF670072 RTCNT1_48_A01.b1_A029 Root control P... 58 6e-007
gb|CF672794.1|CF672794 RTCNT1_74_B01.b1_A029 Root control P... 58 6e-007
gb|BX678712.1|BX678712 BX678712 RS Pinus pinaster cDNA clon... 58 6e-007
gb|CO158422.1|CO158422 FLD1_6_G03.g1_A029 Root flooded Pinu... 58 6e-007
gb|CO160429.1|CO160429 FLD1_20_H12.g1_A029 Root flooded Pin... 58 6e-007
gb|CO161408.1|CO161408 FLD1_28_D03.g1_A029 Root flooded Pin... 58 6e-007
gb|CO172000.1|CO172000 NDL1_26_H11.b1_A029 Needles control ... 58 6e-007
gb|CO198057.1|CO198057 GEO1_11_A08.b1_A029 Root gravitropis... 58 6e-007
gb|CO199878.1|CO199878 GEO2_4_C04.b1_A032 Root gravitropism... 58 6e-007
gb|CO199955.1|CO199955 GEO2_4_C04.g1_A032 Root gravitropism... 58 6e-007
gb|CO368135.1|CO368135 RTK1_38_G08.g1_A029 Roots minus pota... 58 6e-007
gb|CO369202.1|CO369202 RTK1_45_D02.g1_A029 Roots minus pota... 58 6e-007
gb|CV032008.1|CV032008 RTNACL1_5_D05.b1_A029 Roots plus add... 58 6e-007
gb|CX645269.1|CX645269 COLD1_1_C08.g1_A029 Root cold Pinus ... 58 6e-007
gb|CX648337.1|CX648337 COLD1_28_B08.b1_A029 Root cold Pinus... 58 6e-007
gb|CX648959.1|CX648959 COLD1_32_B09.b1_A029 Root cold Pinus... 58 6e-007
gb|CX650723.1|CX650723 COLD1_47_E04.g1_A029 Root cold Pinus... 58 6e-007
gb|DR010779.1|DR010779 HEAT1_1_F06.b1_A029 Root at 37 C for... 58 6e-007
gb|DR010857.1|DR010857 HEAT1_1_F06.g1_A029 Root at 37 C for... 58 6e-007
gb|DR016415.1|DR016415 STRS1_10_A08.b1_A034 Shoot tip pitch... 58 6e-007
gb|DR020355.1|DR020355 STRS1_36_H06.b1_A034 Shoot tip pitch... 58 6e-007
gb|DR020425.1|DR020425 STRS1_36_H06.g1_A034 Shoot tip pitch... 58 6e-007
gb|DR022465.1|DR022465 STRS1_51_F01.b1_A034 Shoot tip pitch... 58 6e-007
gb|DR022529.1|DR022529 STRS1_51_F01.g1_A034 Shoot tip pitch... 58 6e-007
gb|DR053466.1|DR053466 RTCA1_11_G10.b1_A029 Roots minus cal... 58 6e-007
gb|DR059327.1|DR059327 RTNIT1_17_C03.b1_A029 Roots minus ni... 58 6e-007
gb|DR069623.1|DR069623 RTDK1_8_H09.b1_A029 Roots, dark Pinu... 58 6e-007
gb|DR069742.1|DR069742 RTDK1_9_D10.b1_A029 Roots, dark Pinu... 58 6e-007
gb|DR077997.1|DR077997 RTFEPL1_1_G01.b1_A029 Roots plus add... 58 6e-007
gb|DR078053.1|DR078053 RTFEPL1_1_D06.g1_A029 Roots plus add... 58 6e-007
gb|DR078079.1|DR078079 RTFEPL1_1_G01.g1_A029 Roots plus add... 58 6e-007
gb|DR078405.1|DR078405 RTFEPL1_4_A11.b1_A029 Roots plus add... 58 6e-007
gb|DR088359.1|DR088359 RTAL1_1_D08.b1_A029 Roots plus added... 58 6e-007
gb|DR094342.1|DR094342 STRR1_14_A07.b1_A033 Stem Response R... 58 6e-007
gb|DR095332.1|DR095332 STRR1_20_H02.b1_A033 Stem Response R... 58 6e-007
gb|DR097597.1|DR097597 STRR1_35_F09.g4_A033 Stem Response R... 58 6e-007
gb|DR098077.1|DR098077 STRR1_39_A09.b1_A033 Stem Response R... 58 6e-007
gb|DR098259.1|DR098259 STRR1_40_E06.b1_A033 Stem Response R... 58 6e-007
gb|DR099653.1|DR099653 STRR1_57_D07.b1_A033 Stem Response R... 58 6e-007
gb|DR101584.1|DR101584 STRR1_74_H05.b1_A033 Stem Response R... 58 6e-007
gb|DR101658.1|DR101658 STRR1_74_H05.g1_A033 Stem Response R... 58 6e-007
gb|DR120850.1|DR120850 RTMG1_32_H05.b1_A029 Roots minus mag... 58 6e-007
gb|DR178053.1|DR178053 RTMNUT1_9_B04.b1_A029 Roots minus mi... 58 6e-007
gb|DR179407.1|DR179407 RTMNUT1_22_A02.b2_A029 Roots minus m... 58 6e-007
gb|DR180812.1|DR180812 RTMNUT1_35_B03.b1_A029 Roots minus m... 58 6e-007
gb|DR180889.1|DR180889 RTMNUT1_35_B03.g1_A029 Roots minus m... 58 6e-007
gb|DR385097.1|DR385097 RTHG1_6_D02.g1_A029 Roots plus added... 58 6e-007
gb|DR385324.1|DR385324 RTHG1_8_A11.b1_A029 Roots plus added... 58 6e-007
gb|DR388433.1|DR388433 RTHG1_28_F03.b1_A029 Roots plus adde... 58 6e-007
gb|DR388680.1|DR388680 RTHG1_29_G06.g1_A029 Roots plus adde... 58 6e-007
gb|DR742942.1|DR742942 RTCU1_8_B04.g2_A029 Roots plus added... 58 6e-007
gb|DR743628.1|DR743628 RTCU1_17_D07.b1_A029 Roots plus adde... 58 6e-007
gb|DR743699.1|DR743699 RTCU1_17_D07.g1_A029 Roots plus adde... 58 6e-007
gb|DR743926.1|DR743926 RTCU1_19_C07.b1_A029 Roots plus adde... 58 6e-007
gb|DR744974.1|DR744974 RTCU1_26_D05.b1_A029 Roots plus adde... 58 6e-007
gb|DR745352.1|DR745352 RTCU1_28_E12.g1_A029 Roots plus adde... 58 6e-007
dbj|BD224279.1| Materials and methods for the modification ... 58 6e-007
dbj|BD224324.1| Materials and methods for the modification ... 58 6e-007
dbj|BD224400.1| Materials and methods for the modification ... 58 6e-007
dbj|BD272995.1| Materials and methods for the modification ... 58 6e-007
gb|BG275633.1|BG275633 NXSI_144_B02_F NXSI (Nsf Xylem Side ... 52 3e-005
gb|AW888069.1|AW888069 NXNV_126_H07_F Nsf Xylem Normal wood... 50 1e-004
gb|CF476197.1|CF476197 RTWW2_21_B01.g1_A021 Well-watered lo... 50 1e-004
gb|DR023030.1|DR023030 STRS1_55_B12.b1_A034 Shoot tip pitch... 50 1e-004
gb|DR386950.1|DR386950 RTHG1_18_A04.g1_A029 Roots plus adde... 50 1e-004
gb|CF477371.1|CF477371 RTWW3_7_H02.b1_A022 Well-watered lob... 46 0.002
gb|CF473580.1|CF473580 RTWW2_3_G09.g1_A021 Well-watered lob... 40 0.13
>gb|CX649036.1|CX649036 COLD1_32_B09.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_32_B09_A029 5', mRNA sequence
Length = 551
Score = 60.0 bits (30), Expect = 1e-007
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggtc 632
||||||||||||||||||||||||||||||
Sbjct: 48 gaaccgctcggggcggaactcctcggggtc 19
>gb|DR016492.1|DR016492 STRS1_10_A08.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_10_A08_A034 5', mRNA sequence
Length = 499
Score = 60.0 bits (30), Expect = 1e-007
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggtc 632
||||||||||||||||||||||||||||||
Sbjct: 30 gaaccgctcggggcggaactcctcggggtc 1
>gb|AA556941.1|AA556941 783 Loblolly pine C Pinus taeda cDNA clone 7C7B, mRNA sequence
Length = 678
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
|||||||||||||||||||||||||||||
Sbjct: 391 gaaccgctcggggcggaactcctcggggt 363
>gb|AI812771.1|AI812771 18H4 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 518
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
|||||||||||||||||||||||||||||
Sbjct: 256 gaaccgctcggggcggaactcctcggggt 228
>gb|AI812842.1|AI812842 20F6 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 539
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
|||||||||||||||||||||||||||||
Sbjct: 271 gaaccgctcggggcggaactcctcggggt 243
>gb|AW042602.1|AW042602 ST23G12 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST23G12, mRNA sequence
Length = 478
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
|||||||||||||||||||||||||||||
Sbjct: 321 gaaccgctcggggcggaactcctcggggt 293
>gb|AW290024.1|AW290024 NXNV009G04F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV009G04 5', mRNA sequence
Length = 438
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
|||||||||||||||||||||||||||||
Sbjct: 199 gaaccgctcggggcggaactcctcggggt 171
>gb|BX251949.1|BX251949 BX251949 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP057F03 similar to TRANS CINNAMATE 4
MONOOXYGENASE, mRNA sequence
Length = 672
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
|||||||||||||||||||||||||||||
Sbjct: 410 gaaccgctcggggcggaactcctcggggt 382
>gb|BX252751.1|BX252751 BX252751 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP070B11 similar to TRANS CINNAMATE 4
MONOOXYGENASE, mRNA sequence
Length = 637
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
|||||||||||||||||||||||||||||
Sbjct: 626 gaaccgctcggggcggaactcctcggggt 598
>gb|BX252947.1|BX252947 BX252947 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP075D08 similar to TRANS CINNAMATE 4
MONOOXYGENASE, mRNA sequence
Length = 596
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
|||||||||||||||||||||||||||||
Sbjct: 171 gaaccgctcggggcggaactcctcggggt 143
>gb|BX254605.1|BX254605 BX254605 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP101A11 similar to TRANS CINNAMATE 4
MONOOXYGENASE, mRNA sequence
Length = 634
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
|||||||||||||||||||||||||||||
Sbjct: 156 gaaccgctcggggcggaactcctcggggt 128
>gb|BX254863.1|BX254863 BX254863 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP106C08 similar to TRANS CINNAMATE 4
MONOOXYGENASE, mRNA sequence
Length = 672
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
|||||||||||||||||||||||||||||
Sbjct: 318 gaaccgctcggggcggaactcctcggggt 290
>gb|BX254943.1|BX254943 BX254943 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP107H04 similar to TRANS CINNAMATE 4
MONOOXYGENASE, mRNA sequence
Length = 443
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
|||||||||||||||||||||||||||||
Sbjct: 344 gaaccgctcggggcggaactcctcggggt 316
>gb|BE187484.1|BE187484 NXNV_98_G10_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV_98_G10 5' similar to Arabidopsis thaliana sequence
At2g30490 cinnamate-4-hydroxylase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 614
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
|||||||||||||||||||||||||||||
Sbjct: 224 gaaccgctcggggcggaactcctcggggt 196
>gb|BF221256.1|BF221256 NXCI_156_F01_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_156_F01 5' similar to Arabidopsis
thaliana sequence At2g30490 cinnamate-4-hydroxylase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 391
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
|||||||||||||||||||||||||||||
Sbjct: 341 gaaccgctcggggcggaactcctcggggt 313
>gb|BF609556.1|BF609556 NXSI_046_B06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_046_B06 5' similar to Arabidopsis thaliana
sequence At2g30490 cinnamate-4-hydroxylase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 329
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
|||||||||||||||||||||||||||||
Sbjct: 263 gaaccgctcggggcggaactcctcggggt 235
>gb|BF610527.1|BF610527 NXSI_059_F06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_059_F06 5' similar to Arabidopsis thaliana
sequence At2g30490 cinnamate-4-hydroxylase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 532
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
|||||||||||||||||||||||||||||
Sbjct: 477 gaaccgctcggggcggaactcctcggggt 449
>gb|BF777569.1|BF777569 NXSI_070_A12_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_070_A12 5' similar to Arabidopsis thaliana
sequence At2g30490 cinnamate-4-hydroxylase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 318
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
|||||||||||||||||||||||||||||
Sbjct: 255 gaaccgctcggggcggaactcctcggggt 227
>gb|BF778666.1|BF778666 NXSI_090_D08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_090_D08 5' similar to Arabidopsis thaliana
sequence At2g30490 cinnamate-4-hydroxylase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 440
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
|||||||||||||||||||||||||||||
Sbjct: 255 gaaccgctcggggcggaactcctcggggt 227
>gb|BG039758.1|BG039758 NXSI_103_F12_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_103_F12 5' similar to Arabidopsis thaliana
sequence At2g30490 cinnamate-4-hydroxylase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 322
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
|||||||||||||||||||||||||||||
Sbjct: 263 gaaccgctcggggcggaactcctcggggt 235
>gb|BG040113.1|BG040113 NXSI_106_F02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_106_F02 5' similar to Arabidopsis thaliana
sequence At2g30490 cinnamate-4-hydroxylase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 326
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
|||||||||||||||||||||||||||||
Sbjct: 263 gaaccgctcggggcggaactcctcggggt 235
>gb|BG275289.1|BG275289 NXSI_142_A01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_142_A01 5' similar to Arabidopsis thaliana
sequence At2g30490 cinnamate-4-hydroxylase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 321
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
|||||||||||||||||||||||||||||
Sbjct: 255 gaaccgctcggggcggaactcctcggggt 227
>gb|BG275516.1|BG275516 NXSI_139_E05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_139_E05 5' similar to Arabidopsis thaliana
sequence At2g30490 cinnamate-4-hydroxylase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 417
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
|||||||||||||||||||||||||||||
Sbjct: 330 gaaccgctcggggcggaactcctcggggt 302
>gb|BG276019.1|BG276019 NXSI_147_E12_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_147_E12 5' similar to Arabidopsis thaliana
sequence At2g30490 cinnamate-4-hydroxylase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 343
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
|||||||||||||||||||||||||||||
Sbjct: 258 gaaccgctcggggcggaactcctcggggt 230
>gb|BI644029.1|BI644029 NXPV_127_B12_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_127_B12 5' similar to Arabidopsis
thaliana sequence At2g30490 cinnamate-4-hydroxylase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 217
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
|||||||||||||||||||||||||||||
Sbjct: 178 gaaccgctcggggcggaactcctcggggt 150
>gb|BM427766.1|BM427766 NXRV_003_A06_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_003_A06 5' similar to Arabidopsis thaliana
sequence At2g30490 cinnamate-4-hydroxylase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 561
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
|||||||||||||||||||||||||||||
Sbjct: 193 gaaccgctcggggcggaactcctcggggt 165
>gb|BQ696484.1|BQ696484 NXPV_041_G06_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_041_G06 5' similar to Arabidopsis
thaliana sequence At2g30490 cinnamate-4-hydroxylase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 247
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
|||||||||||||||||||||||||||||
Sbjct: 178 gaaccgctcggggcggaactcctcggggt 150
>gb|BQ699307.1|BQ699307 NXRV126_A09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV126_A09 5' similar to Arabidopsis thaliana
sequence At2g30490 cinnamate-4-hydroxylase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 346
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
|||||||||||||||||||||||||||||
Sbjct: 282 gaaccgctcggggcggaactcctcggggt 254
>gb|BQ699654.1|BQ699654 NXRV125_B02_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV125_B02 5' similar to Arabidopsis thaliana
sequence At2g30490 cinnamate-4-hydroxylase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 308
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
|||||||||||||||||||||||||||||
Sbjct: 220 gaaccgctcggggcggaactcctcggggt 192
>gb|BQ699741.1|BQ699741 NXRV128_C09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV128_C09 5' similar to Arabidopsis thaliana
sequence At2g30490 cinnamate-4-hydroxylase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 560
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
|||||||||||||||||||||||||||||
Sbjct: 314 gaaccgctcggggcggaactcctcggggt 286
>gb|BQ701255.1|BQ701255 NXSI_061_D08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_061_D08 5' similar to Arabidopsis thaliana
sequence At2g30490 cinnamate-4-hydroxylase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 316
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
|||||||||||||||||||||||||||||
Sbjct: 263 gaaccgctcggggcggaactcctcggggt 235
>gb|BQ701829.1|BQ701829 NXSI_121_A07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_121_A07 5' similar to Arabidopsis thaliana
sequence At2g30490 cinnamate-4-hydroxylase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 309
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
|||||||||||||||||||||||||||||
Sbjct: 239 gaaccgctcggggcggaactcctcggggt 211
>gb|BQ702414.1|BQ702414 NXSI_128_D03_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_128_D03 5' similar to Arabidopsis thaliana
sequence At2g30490 cinnamate-4-hydroxylase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 447
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
|||||||||||||||||||||||||||||
Sbjct: 263 gaaccgctcggggcggaactcctcggggt 235
>gb|CD016854.1|CD016854 NXCI_062_C09_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_062_C09 5', mRNA sequence
Length = 110
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
|||||||||||||||||||||||||||||
Sbjct: 52 gaaccgctcggggcggaactcctcggggt 24
>gb|CD021604.1|CD021604 NXNV_156_C06_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_156_C06 5', mRNA sequence
Length = 159
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
|||||||||||||||||||||||||||||
Sbjct: 80 gaaccgctcggggcggaactcctcggggt 52
>gb|CD026691.1|CD026691 NXNV009G04 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV009G04 5' similar to Arabidopsis thaliana sequence
At2g30490 cinnamate-4-hydroxylase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 438
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
|||||||||||||||||||||||||||||
Sbjct: 199 gaaccgctcggggcggaactcctcggggt 171
>gb|CF385572.1|CF385572 RTDR1_4_A06.g1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_4_A06_A015 5', mRNA
sequence
Length = 529
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
|||||||||||||||||||||||||||||
Sbjct: 436 gaaccgctcggggcggaactcctcggggt 464
>gb|CF387165.1|CF387165 RTDR1_11_A09.b1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_11_A09_A015 3', mRNA
sequence
Length = 574
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
|||||||||||||||||||||||||||||
Sbjct: 125 gaaccgctcggggcggaactcctcggggt 97
>gb|CF387281.1|CF387281 RTDR1_11_A09.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_11_A09_A015 5', mRNA
sequence
Length = 748
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
|||||||||||||||||||||||||||||
Sbjct: 585 gaaccgctcggggcggaactcctcggggt 557
>gb|CF387668.1|CF387668 RTDR1_19_A10.b1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_19_A10_A015 3', mRNA
sequence
Length = 541
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
|||||||||||||||||||||||||||||
Sbjct: 40 gaaccgctcggggcggaactcctcggggt 12
>gb|CF389398.1|CF389398 RTDR2_7_E10.b1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_7_E10_A021 3', mRNA
sequence
Length = 618
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
|||||||||||||||||||||||||||||
Sbjct: 161 gaaccgctcggggcggaactcctcggggt 133
>gb|CF394836.1|CF394836 RTDS2_8_G08.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_8_G08_A021 3', mRNA sequence
Length = 564
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
|||||||||||||||||||||||||||||
Sbjct: 114 gaaccgctcggggcggaactcctcggggt 86
>gb|CF394939.1|CF394939 RTDS2_8_G08.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_8_G08_A021 5', mRNA sequence
Length = 571
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
|||||||||||||||||||||||||||||
Sbjct: 111 gaaccgctcggggcggaactcctcggggt 83
>gb|CF395347.1|CF395347 RTDS2_11_B10.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_11_B10_A021 3', mRNA sequence
Length = 496
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
|||||||||||||||||||||||||||||
Sbjct: 39 gaaccgctcggggcggaactcctcggggt 11
>gb|CF395486.1|CF395486 RTDS2_11_B10.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_11_B10_A021 5', mRNA sequence
Length = 741
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
|||||||||||||||||||||||||||||
Sbjct: 257 gaaccgctcggggcggaactcctcggggt 229
>gb|CF395618.1|CF395618 RTDS2_12_H02.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_12_H02_A021 5', mRNA sequence
Length = 700
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
|||||||||||||||||||||||||||||
Sbjct: 646 gaaccgctcggggcggaactcctcggggt 618
>gb|CF398102.1|CF398102 RTDS3_21_C08.b1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_21_C08_A022 3', mRNA sequence
Length = 758
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
|||||||||||||||||||||||||||||
Sbjct: 260 gaaccgctcggggcggaactcctcggggt 288
>gb|CF399422.1|CF399422 RTDS3_28_D06.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_28_D06_A022 5', mRNA sequence
Length = 560
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
|||||||||||||||||||||||||||||
Sbjct: 505 gaaccgctcggggcggaactcctcggggt 477
>gb|CF399839.1|CF399839 RTWW1_1_H11.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_1_H11_A015 5', mRNA sequence
Length = 817
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
|||||||||||||||||||||||||||||
Sbjct: 528 gaaccgctcggggcggaactcctcggggt 500
>gb|CF400053.1|CF400053 RTWW1_2_B07.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_2_B07_A015 5', mRNA sequence
Length = 701
Score = 58.0 bits (29), Expect = 6e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 603 gaaccgctcggggcggaactcctcggggt 631
|||||||||||||||||||||||||||||
Sbjct: 442 gaaccgctcggggcggaactcctcggggt 414
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 54,521
Number of Sequences: 355925
Number of extensions: 54521
Number of successful extensions: 14107
Number of sequences better than 0.5: 147
Number of HSP's better than 0.5 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13960
Number of HSP's gapped (non-prelim): 147
length of query: 767
length of database: 217,277,237
effective HSP length: 19
effective length of query: 748
effective length of database: 210,514,662
effective search space: 157464967176
effective search space used: 157464967176
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)