BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3665414.2.1
(3330 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ695902.1|BQ695902 NXPV_034_A09_F NXPV (Nsf Xylem Plani... 50 6e-004
gb|BE496448.1|BE496448 NXCI_018_C03_F NXCI (Nsf Xylem Compr... 44 0.037
gb|BX254965.1|BX254965 BX254965 Pinus pinaster differenciat... 42 0.15
gb|DR687137.1|DR687137 EST1077215 Normalized pine embryo li... 42 0.15
gb|DT634166.1|DT634166 EST1149097 Normalized pine embryo li... 42 0.15
>gb|BQ695902.1|BQ695902 NXPV_034_A09_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_034_A09 5', mRNA sequence
Length = 529
Score = 50.1 bits (25), Expect = 6e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 300 aggaggagaaggaggagcagcagcagcag 328
|||||||| ||||||||||||||||||||
Sbjct: 175 aggaggaggaggaggagcagcagcagcag 203
Score = 42.1 bits (21), Expect = 0.15
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 297 aggaggaggagaaggaggagcagcagcag 325
||||||||||| ||||| |||||||||||
Sbjct: 175 aggaggaggaggaggagcagcagcagcag 203
>gb|BE496448.1|BE496448 NXCI_018_C03_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda
cDNA clone NXCI_018_C03 5' similar to Arabidopsis
thaliana sequence At5g03640 protein kinase -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 523
Score = 44.1 bits (22), Expect = 0.037
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 3000 ggagatcaaacaacaccccttctttcgtggcataaactgggc 3041
|||||||||||| ||||| ||||| || || |||||||||||
Sbjct: 226 ggagatcaaacagcacccgttcttccgaggaataaactgggc 267
>gb|BX254965.1|BX254965 BX254965 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP108C08 similar to HOMEOBOX PROTEIN, mRNA
sequence
Length = 675
Score = 42.1 bits (21), Expect = 0.15
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 293 atataggaggaggagaaggaggagc 317
||||||||||||||| |||||||||
Sbjct: 36 atataggaggaggaggaggaggagc 60
>gb|DR687137.1|DR687137 EST1077215 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABN68 3' end, mRNA sequence
Length = 792
Score = 42.1 bits (21), Expect = 0.15
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 309 aggaggagcagcagcagcagc 329
|||||||||||||||||||||
Sbjct: 238 aggaggagcagcagcagcagc 218
>gb|DT634166.1|DT634166 EST1149097 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMG301 3' end, mRNA sequence
Length = 834
Score = 42.1 bits (21), Expect = 0.15
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 309 aggaggagcagcagcagcagc 329
|||||||||||||||||||||
Sbjct: 246 aggaggagcagcagcagcagc 226
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 442,426
Number of Sequences: 355925
Number of extensions: 442426
Number of successful extensions: 139825
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 139810
Number of HSP's gapped (non-prelim): 13
length of query: 3330
length of database: 217,277,237
effective HSP length: 20
effective length of query: 3310
effective length of database: 210,158,737
effective search space: 695625419470
effective search space used: 695625419470
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)