BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3510875.2.1
         (707 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DN459286.1|DN459286  EST955085 Sequencing ESTs from loblo...    38   0.47 
gb|DT626688.1|DT626688  EST1159764 Sequencing ESTs from lobl...    38   0.47 

>gb|DN459286.1|DN459286 EST955085 Sequencing ESTs from loblolly pine embryos Pinus taeda
           cDNA clone RPIHL42 5' end, mRNA sequence
          Length = 336

 Score = 38.2 bits (19), Expect = 0.47
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 293 ggtggtcccggaggtggcgccgg 315
           |||||||| ||||||||||||||
Sbjct: 256 ggtggtccaggaggtggcgccgg 278



>gb|DT626688.1|DT626688 EST1159764 Sequencing ESTs from loblolly pine embryos Pinus taeda
           cDNA clone PIMAQ20 5' end, mRNA sequence
          Length = 875

 Score = 38.2 bits (19), Expect = 0.47
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 293 ggtggtcccggaggtggcgccgg 315
           |||||||| ||||||||||||||
Sbjct: 256 ggtggtccaggaggtggcgccgg 278



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 54,834
Number of Sequences: 355925
Number of extensions: 54834
Number of successful extensions: 13035
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13032
Number of HSP's gapped (non-prelim): 3
length of query: 707
length of database: 217,277,237
effective HSP length: 19
effective length of query: 688
effective length of database: 210,514,662
effective search space: 144834087456
effective search space used: 144834087456
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)