BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3276111.2.1
         (1393 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DR069530.1|DR069530  RTDK1_7_F12.g1_A029 Roots, dark Pinu...    44   0.015
gb|DR069440.1|DR069440  RTDK1_7_F12.b1_A029 Roots, dark Pinu...    40   0.24 

>gb|DR069530.1|DR069530 RTDK1_7_F12.g1_A029 Roots, dark Pinus taeda cDNA clone
           RTDK1_7_F12_A029 5', mRNA sequence
          Length = 816

 Score = 44.1 bits (22), Expect = 0.015
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 946 tactggctcgtcaagaactcgtgggg 971
           |||||| |||||||||||||||||||
Sbjct: 322 tactggatcgtcaagaactcgtgggg 297




 Score = 40.1 bits (20), Expect = 0.24
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 665 tcaccaccgaggccaactac 684
           ||||||||||||||||||||
Sbjct: 603 tcaccaccgaggccaactac 584



>gb|DR069440.1|DR069440 RTDK1_7_F12.b1_A029 Roots, dark Pinus taeda cDNA clone
           RTDK1_7_F12_A029 3', mRNA sequence
          Length = 844

 Score = 40.1 bits (20), Expect = 0.24
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 665 tcaccaccgaggccaactac 684
           ||||||||||||||||||||
Sbjct: 236 tcaccaccgaggccaactac 217



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 146,212
Number of Sequences: 355925
Number of extensions: 146212
Number of successful extensions: 42719
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42714
Number of HSP's gapped (non-prelim): 5
length of query: 1393
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1374
effective length of database: 210,514,662
effective search space: 289247145588
effective search space used: 289247145588
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)