BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3276099.2.1
(545 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR683340.1|DR683340 EST1073416 Normalized pine embryo li... 56 2e-006
gb|DR695338.1|DR695338 EST1085431 Normalized pine embryo li... 56 2e-006
gb|DT631572.1|DT631572 EST1146503 Normalized pine embryo li... 56 2e-006
gb|AW981601.1|AW981601 PC14E06 Pine TriplEx pollen cone lib... 38 0.36
gb|BX248931.1|BX248931 BX248931 Pinus pinaster differenciat... 38 0.36
gb|CF471564.1|CF471564 RTDS1_4_F11.b1_A015 Drought-stressed... 38 0.36
gb|CF665619.1|CF665619 RTCNT1_17_D12.b1_A029 Root control P... 38 0.36
gb|BX676800.1|BX676800 BX676800 RN Pinus pinaster cDNA clon... 38 0.36
gb|BX677682.1|BX677682 BX677682 RN Pinus pinaster cDNA clon... 38 0.36
gb|CR392103.1|CR392103 CR392103 RN Pinus pinaster cDNA clon... 38 0.36
gb|CO163868.1|CO163868 FLD1_44_F12.b1_A029 Root flooded Pin... 38 0.36
gb|CO165751.1|CO165751 FLD1_56_F10.g1_A029 Root flooded Pin... 38 0.36
gb|CO165761.1|CO165761 FLD1_56_G10.g1_A029 Root flooded Pin... 38 0.36
gb|CV036061.1|CV036061 RTNACL1_44_A04.g1_A029 Roots plus ad... 38 0.36
gb|CX651373.1|CX651373 COLD1_52_A01.b1_A029 Root cold Pinus... 38 0.36
gb|CX651440.1|CX651440 COLD1_52_A01.g1_A029 Root cold Pinus... 38 0.36
gb|DN630631.1|DN630631 EST981447 Subtracted pine embryo lib... 38 0.36
gb|DR015456.1|DR015456 STRS1_3_D06.g1_A034 Shoot tip pitch ... 38 0.36
gb|DR058095.1|DR058095 RTNIT1_9_E03.g1_A029 Roots minus nit... 38 0.36
gb|DR169182.1|DR169182 RTPHOS1_30_D03.g1_A029 Roots minus p... 38 0.36
gb|DR386167.1|DR386167 RTHG1_13_H03.b1_A029 Roots plus adde... 38 0.36
gb|DR387572.1|DR387572 RTHG1_22_F02.g2_A029 Roots plus adde... 38 0.36
gb|DR387574.1|DR387574 RTHG1_22_F04.g2_A029 Roots plus adde... 38 0.36
gb|DT630315.1|DT630315 EST1154727 Subtracted pine embryo li... 38 0.36
>gb|DR683340.1|DR683340 EST1073416 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAG06 3' end, mRNA sequence
Length = 777
Score = 56.0 bits (28), Expect = 2e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 72 aagcttcaggttcaagaaaggatgacaaggcagatagctgaagc 115
|||||||| |||||||||||| | |||| |||||||||||||||
Sbjct: 333 aagcttcaagttcaagaaaggcttacaaagcagatagctgaagc 376
>gb|DR695338.1|DR695338 EST1085431 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEN91 3' end, mRNA sequence
Length = 294
Score = 56.0 bits (28), Expect = 2e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 72 aagcttcaggttcaagaaaggatgacaaggcagatagctgaagc 115
|||||||| |||||||||||| | |||| |||||||||||||||
Sbjct: 121 aagcttcaagttcaagaaaggcttacaaagcagatagctgaagc 164
>gb|DT631572.1|DT631572 EST1146503 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFA26 3' end, mRNA sequence
Length = 910
Score = 56.0 bits (28), Expect = 2e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 72 aagcttcaggttcaagaaaggatgacaaggcagatagctgaagc 115
|||||||| |||||||||||| | |||| |||||||||||||||
Sbjct: 341 aagcttcaagttcaagaaaggcttacaaagcagatagctgaagc 384
>gb|AW981601.1|AW981601 PC14E06 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC14E06, mRNA sequence
Length = 480
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 97 caaggcagatagctgaagc 115
|||||||||||||||||||
Sbjct: 336 caaggcagatagctgaagc 318
>gb|BX248931.1|BX248931 BX248931 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP002G12, mRNA sequence
Length = 660
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 97 caaggcagatagctgaagc 115
|||||||||||||||||||
Sbjct: 508 caaggcagatagctgaagc 490
>gb|CF471564.1|CF471564 RTDS1_4_F11.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_4_F11_A015 3', mRNA sequence
Length = 743
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 97 caaggcagatagctgaagc 115
|||||||||||||||||||
Sbjct: 291 caaggcagatagctgaagc 309
>gb|CF665619.1|CF665619 RTCNT1_17_D12.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_17_D12_A029 3', mRNA sequence
Length = 467
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 97 caaggcagatagctgaagc 115
|||||||||||||||||||
Sbjct: 203 caaggcagatagctgaagc 185
>gb|BX676800.1|BX676800 BX676800 RN Pinus pinaster cDNA clone RN11D02, mRNA sequence
Length = 402
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 97 caaggcagatagctgaagc 115
|||||||||||||||||||
Sbjct: 114 caaggcagatagctgaagc 96
>gb|BX677682.1|BX677682 BX677682 RN Pinus pinaster cDNA clone RN43A10, mRNA sequence
Length = 351
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 97 caaggcagatagctgaagc 115
|||||||||||||||||||
Sbjct: 105 caaggcagatagctgaagc 87
>gb|CR392103.1|CR392103 CR392103 RN Pinus pinaster cDNA clone RN12pD02, mRNA sequence
Length = 364
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 97 caaggcagatagctgaagc 115
|||||||||||||||||||
Sbjct: 95 caaggcagatagctgaagc 77
>gb|CO163868.1|CO163868 FLD1_44_F12.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_44_F12_A029 3', mRNA sequence
Length = 820
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 97 caaggcagatagctgaagc 115
|||||||||||||||||||
Sbjct: 225 caaggcagatagctgaagc 243
>gb|CO165751.1|CO165751 FLD1_56_F10.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_56_F10_A029 5', mRNA sequence
Length = 763
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 97 caaggcagatagctgaagc 115
|||||||||||||||||||
Sbjct: 519 caaggcagatagctgaagc 501
>gb|CO165761.1|CO165761 FLD1_56_G10.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_56_G10_A029 5', mRNA sequence
Length = 658
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 97 caaggcagatagctgaagc 115
|||||||||||||||||||
Sbjct: 519 caaggcagatagctgaagc 501
>gb|CV036061.1|CV036061 RTNACL1_44_A04.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_44_A04_A029 5', mRNA sequence
Length = 824
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 97 caaggcagatagctgaagc 115
|||||||||||||||||||
Sbjct: 434 caaggcagatagctgaagc 452
>gb|CX651373.1|CX651373 COLD1_52_A01.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_52_A01_A029 3', mRNA sequence
Length = 787
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 97 caaggcagatagctgaagc 115
|||||||||||||||||||
Sbjct: 495 caaggcagatagctgaagc 477
>gb|CX651440.1|CX651440 COLD1_52_A01.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_52_A01_A029 5', mRNA sequence
Length = 606
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 97 caaggcagatagctgaagc 115
|||||||||||||||||||
Sbjct: 569 caaggcagatagctgaagc 551
>gb|DN630631.1|DN630631 EST981447 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTABX28, mRNA sequence
Length = 941
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 97 caaggcagatagctgaagc 115
|||||||||||||||||||
Sbjct: 703 caaggcagatagctgaagc 685
>gb|DR015456.1|DR015456 STRS1_3_D06.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_3_D06_A034 5', mRNA sequence
Length = 736
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 97 caaggcagatagctgaagc 115
|||||||||||||||||||
Sbjct: 440 caaggcagatagctgaagc 422
>gb|DR058095.1|DR058095 RTNIT1_9_E03.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_9_E03_A029 5', mRNA sequence
Length = 166
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 97 caaggcagatagctgaagc 115
|||||||||||||||||||
Sbjct: 78 caaggcagatagctgaagc 60
>gb|DR169182.1|DR169182 RTPHOS1_30_D03.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_30_D03_A029 5', mRNA sequence
Length = 706
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 97 caaggcagatagctgaagc 115
|||||||||||||||||||
Sbjct: 254 caaggcagatagctgaagc 272
>gb|DR386167.1|DR386167 RTHG1_13_H03.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_13_H03_A029 3', mRNA sequence
Length = 753
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 97 caaggcagatagctgaagc 115
|||||||||||||||||||
Sbjct: 331 caaggcagatagctgaagc 313
>gb|DR387572.1|DR387572 RTHG1_22_F02.g2_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_22_F02_A029 5', mRNA sequence
Length = 662
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 97 caaggcagatagctgaagc 115
|||||||||||||||||||
Sbjct: 330 caaggcagatagctgaagc 348
>gb|DR387574.1|DR387574 RTHG1_22_F04.g2_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_22_F04_A029 5', mRNA sequence
Length = 717
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 97 caaggcagatagctgaagc 115
|||||||||||||||||||
Sbjct: 329 caaggcagatagctgaagc 347
>gb|DT630315.1|DT630315 EST1154727 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PIME743, mRNA sequence
Length = 967
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 97 caaggcagatagctgaagc 115
|||||||||||||||||||
Sbjct: 723 caaggcagatagctgaagc 705
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 65,883
Number of Sequences: 355925
Number of extensions: 65883
Number of successful extensions: 18772
Number of sequences better than 0.5: 24
Number of HSP's better than 0.5 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18748
Number of HSP's gapped (non-prelim): 24
length of query: 545
length of database: 217,277,237
effective HSP length: 19
effective length of query: 526
effective length of database: 210,514,662
effective search space: 110730712212
effective search space used: 110730712212
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)