BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3204680.2.1
(672 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR055965.1|DR055965 RTCA1_27_E03.b1_A029 Roots minus cal... 46 0.002
gb|CF393447.1|CF393447 RTDR3_13_F08.b1_A022 Loblolly pine r... 40 0.11
gb|CF393543.1|CF393543 RTDR3_13_F08.g1_A022 Loblolly pine r... 40 0.11
gb|CF474032.1|CF474032 RTWW2_18_C08.b1_A021 Well-watered lo... 40 0.11
gb|CF664508.1|CF664508 RTCNT1_10_F05.b1_A029 Root control P... 40 0.11
gb|BX682419.1|BX682419 BX682419 Pinus pinaster differenciat... 40 0.11
gb|CO159040.1|CO159040 FLD1_11_A05.b1_A029 Root flooded Pin... 40 0.11
gb|CO159111.1|CO159111 FLD1_11_A05.g1_A029 Root flooded Pin... 40 0.11
gb|CO159438.1|CO159438 FLD1_13_C12.g1_A029 Root flooded Pin... 40 0.11
gb|CX648261.1|CX648261 COLD1_27_B11.g1_A029 Root cold Pinus... 40 0.11
gb|DN450818.1|DN450818 EST946617 Sequencing ESTs from loblo... 40 0.11
gb|DN627809.1|DN627809 EST978625 Subtracted pine embryo lib... 40 0.11
gb|DN628031.1|DN628031 EST978847 Subtracted pine embryo lib... 40 0.11
gb|DN628852.1|DN628852 EST979668 Subtracted pine embryo lib... 40 0.11
gb|DN630889.1|DN630889 EST981705 Subtracted pine embryo lib... 40 0.11
gb|DN631306.1|DN631306 EST982122 Subtracted pine embryo lib... 40 0.11
gb|DN632729.1|DN632729 EST983545 Subtracted pine embryo lib... 40 0.11
gb|DN634085.1|DN634085 EST984901 Subtracted pine embryo lib... 40 0.11
gb|DR013139.1|DR013139 HEAT1_17_F05.b1_A029 Root at 37 C fo... 40 0.11
gb|DR024062.1|DR024062 STRS1_62_B05.b1_A034 Shoot tip pitch... 40 0.11
gb|DR055988.1|DR055988 RTCA1_27_G07.b1_A029 Roots minus cal... 40 0.11
gb|DR060018.1|DR060018 RTNIT1_25_E04.b1_A029 Roots minus ni... 40 0.11
gb|DR117730.1|DR117730 RTMG1_8_G01.g1_A029 Roots minus magn... 40 0.11
gb|DR178749.1|DR178749 RTMNUT1_13_F03.g1_A029 Roots minus m... 40 0.11
gb|DR179164.1|DR179164 RTMNUT1_16_H11.b1_A029 Roots minus m... 40 0.11
gb|DR179243.1|DR179243 RTMNUT1_16_H11.g1_A029 Roots minus m... 40 0.11
gb|DR181728.1|DR181728 RTMNUT1_40_D09.g2_A029 Roots minus m... 40 0.11
gb|DR386118.1|DR386118 RTHG1_13_C02.b1_A029 Roots plus adde... 40 0.11
gb|DR387808.1|DR387808 RTHG1_24_F11.b1_A029 Roots plus adde... 40 0.11
gb|DT625150.1|DT625150 EST1159425 Sequencing ESTs from lobl... 40 0.11
>gb|DR055965.1|DR055965 RTCA1_27_E03.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_27_E03_A029 3', mRNA sequence
Length = 787
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 438 cagtggatttggacgtgagcttggaga 464
|||||| ||||||||||||||||||||
Sbjct: 594 cagtggttttggacgtgagcttggaga 620
>gb|CF393447.1|CF393447 RTDR3_13_F08.b1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_13_F08_A022 3', mRNA
sequence
Length = 664
Score = 40.1 bits (20), Expect = 0.11
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 200 catcaatggaaatctggagggaggaagtctttggtccagt 239
|||||||| |||| ||||||||||| || ||||| |||||
Sbjct: 49 catcaatgcaaatatggagggaggaggtatttgggccagt 88
>gb|CF393543.1|CF393543 RTDR3_13_F08.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_13_F08_A022 5', mRNA
sequence
Length = 742
Score = 40.1 bits (20), Expect = 0.11
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 200 catcaatggaaatctggagggaggaagtctttggtccagt 239
|||||||| |||| ||||||||||| || ||||| |||||
Sbjct: 319 catcaatgcaaatatggagggaggaggtatttgggccagt 358
>gb|CF474032.1|CF474032 RTWW2_18_C08.b1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_18_C08_A021 3', mRNA sequence
Length = 637
Score = 40.1 bits (20), Expect = 0.11
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 200 catcaatggaaatctggagggaggaagtctttggtccagt 239
|||||||| |||| ||||||||||| || ||||| |||||
Sbjct: 96 catcaatgcaaatatggagggaggaggtatttgggccagt 135
>gb|CF664508.1|CF664508 RTCNT1_10_F05.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_10_F05_A029 3', mRNA sequence
Length = 649
Score = 40.1 bits (20), Expect = 0.11
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 200 catcaatggaaatctggagggaggaagtctttggtccagt 239
|||||||| |||| ||||||||||| || ||||| |||||
Sbjct: 106 catcaatgcaaatatggagggaggaggtatttgggccagt 145
>gb|BX682419.1|BX682419 BX682419 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 116C12 similar to BETAINE-ALDEHYDE
DEHYDROGENASE (EC 1.2.1.8), mRNA sequence
Length = 590
Score = 40.1 bits (20), Expect = 0.11
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 262 actgaagatgaagccatcgaacttgccaacgatacacagtatggtttggctggtgc 317
|||||||| ||||| ||||||||||| || || ||||||||| ||||||||||
Sbjct: 122 actgaagaagaagcaatcgaacttgcaaatgactcacagtatgccctggctggtgc 177
Score = 40.1 bits (20), Expect = 0.11
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 200 catcaatggaaatctggagggaggaagtctttggtccagt 239
|||||||| |||| ||||||||||| || ||||| |||||
Sbjct: 60 catcaatgcaaatatggagggaggaggtatttgggccagt 99
>gb|CO159040.1|CO159040 FLD1_11_A05.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_11_A05_A029 3', mRNA sequence
Length = 713
Score = 40.1 bits (20), Expect = 0.11
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 200 catcaatggaaatctggagggaggaagtctttggtccagt 239
|||||||| |||| ||||||||||| || ||||| |||||
Sbjct: 39 catcaatgcaaatatggagggaggaggtatttgggccagt 78
>gb|CO159111.1|CO159111 FLD1_11_A05.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_11_A05_A029 5', mRNA sequence
Length = 796
Score = 40.1 bits (20), Expect = 0.11
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 200 catcaatggaaatctggagggaggaagtctttggtccagt 239
|||||||| |||| ||||||||||| || ||||| |||||
Sbjct: 228 catcaatgcaaatatggagggaggaggtatttgggccagt 267
>gb|CO159438.1|CO159438 FLD1_13_C12.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_13_C12_A029 5', mRNA sequence
Length = 820
Score = 40.1 bits (20), Expect = 0.11
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 200 catcaatggaaatctggagggaggaagtctttggtccagt 239
|||||||| |||| ||||||||||| || ||||| |||||
Sbjct: 574 catcaatgcaaatatggagggaggaggtatttgggccagt 535
>gb|CX648261.1|CX648261 COLD1_27_B11.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_27_B11_A029 5', mRNA sequence
Length = 827
Score = 40.1 bits (20), Expect = 0.11
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 200 catcaatggaaatctggagggaggaagtctttggtccagt 239
|||||||| |||| ||||||||||| || ||||| |||||
Sbjct: 663 catcaatgcaaatatggagggaggaggtatttgggccagt 624
>gb|DN450818.1|DN450818 EST946617 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIEU63 5' end, mRNA sequence
Length = 586
Score = 40.1 bits (20), Expect = 0.11
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 200 catcaatggaaatctggagggaggaagtctttggtccagt 239
|||||||| |||| ||||||||||| || ||||| |||||
Sbjct: 43 catcaatgcaaatatggagggaggaggtatttgggccagt 82
>gb|DN627809.1|DN627809 EST978625 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAAP92, mRNA sequence
Length = 375
Score = 40.1 bits (20), Expect = 0.11
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 200 catcaatggaaatctggagggaggaagtctttggtccagt 239
|||||||| |||| ||||||||||| || ||||| |||||
Sbjct: 258 catcaatgcaaatatggagggaggaggtatttgggccagt 219
>gb|DN628031.1|DN628031 EST978847 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAAT35, mRNA sequence
Length = 465
Score = 40.1 bits (20), Expect = 0.11
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 200 catcaatggaaatctggagggaggaagtctttggtccagt 239
|||||||| |||| ||||||||||| || ||||| |||||
Sbjct: 130 catcaatgcaaatatggagggaggaggtatttgggccagt 169
>gb|DN628852.1|DN628852 EST979668 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAB565, mRNA sequence
Length = 465
Score = 40.1 bits (20), Expect = 0.11
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 200 catcaatggaaatctggagggaggaagtctttggtccagt 239
|||||||| |||| ||||||||||| || ||||| |||||
Sbjct: 336 catcaatgcaaatatggagggaggaggtatttgggccagt 297
>gb|DN630889.1|DN630889 EST981705 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAC122, mRNA sequence
Length = 463
Score = 40.1 bits (20), Expect = 0.11
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 200 catcaatggaaatctggagggaggaagtctttggtccagt 239
|||||||| |||| ||||||||||| || ||||| |||||
Sbjct: 336 catcaatgcaaatatggagggaggaggtatttgggccagt 297
>gb|DN631306.1|DN631306 EST982122 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAC763, mRNA sequence
Length = 465
Score = 40.1 bits (20), Expect = 0.11
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 200 catcaatggaaatctggagggaggaagtctttggtccagt 239
|||||||| |||| ||||||||||| || ||||| |||||
Sbjct: 130 catcaatgcaaatatggagggaggaggtatttgggccagt 169
>gb|DN632729.1|DN632729 EST983545 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTACT89, mRNA sequence
Length = 465
Score = 40.1 bits (20), Expect = 0.11
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 200 catcaatggaaatctggagggaggaagtctttggtccagt 239
|||||||| |||| ||||||||||| || ||||| |||||
Sbjct: 130 catcaatgcaaatatggagggaggaggtatttgggccagt 169
>gb|DN634085.1|DN634085 EST984901 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTADG70, mRNA sequence
Length = 465
Score = 40.1 bits (20), Expect = 0.11
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 200 catcaatggaaatctggagggaggaagtctttggtccagt 239
|||||||| |||| ||||||||||| || ||||| |||||
Sbjct: 336 catcaatgcaaatatggagggaggaggtatttgggccagt 297
>gb|DR013139.1|DR013139 HEAT1_17_F05.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_17_F05_A029 3', mRNA sequence
Length = 847
Score = 40.1 bits (20), Expect = 0.11
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 200 catcaatggaaatctggagggaggaagtctttggtccagt 239
|||||||| |||| ||||||||||| || ||||| |||||
Sbjct: 296 catcaatgcaaatatggagggaggaggtatttgggccagt 335
>gb|DR024062.1|DR024062 STRS1_62_B05.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_62_B05_A034 3', mRNA sequence
Length = 804
Score = 40.1 bits (20), Expect = 0.11
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 200 catcaatggaaatctggagggaggaagtctttggtccagt 239
|||||||| |||| ||||||||||| || ||||| |||||
Sbjct: 262 catcaatgcaaatatggagggaggaggtatttgggccagt 301
>gb|DR055988.1|DR055988 RTCA1_27_G07.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_27_G07_A029 3', mRNA sequence
Length = 868
Score = 40.1 bits (20), Expect = 0.11
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 200 catcaatggaaatctggagggaggaagtctttggtccagt 239
|||||||| |||| ||||||||||| || ||||| |||||
Sbjct: 326 catcaatgcaaatatggagggaggaggtatttgggccagt 365
>gb|DR060018.1|DR060018 RTNIT1_25_E04.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_25_E04_A029 3', mRNA sequence
Length = 796
Score = 40.1 bits (20), Expect = 0.11
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 200 catcaatggaaatctggagggaggaagtctttggtccagt 239
|||||||| |||| ||||||||||| || ||||| |||||
Sbjct: 42 catcaatgcaaatatggagggaggaggtatttgggccagt 81
>gb|DR117730.1|DR117730 RTMG1_8_G01.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_8_G01_A029 5', mRNA sequence
Length = 862
Score = 40.1 bits (20), Expect = 0.11
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 200 catcaatggaaatctggagggaggaagtctttggtccagt 239
|||||||| |||| ||||||||||| || ||||| |||||
Sbjct: 493 catcaatgcaaatatggagggaggaggtatttgggccagt 532
>gb|DR178749.1|DR178749 RTMNUT1_13_F03.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_13_F03_A029 5', mRNA sequence
Length = 748
Score = 40.1 bits (20), Expect = 0.11
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 200 catcaatggaaatctggagggaggaagtctttggtccagt 239
|||||||| |||| ||||||||||| || ||||| |||||
Sbjct: 637 catcaatgcaaatatggagggaggaggtatttgggccagt 598
>gb|DR179164.1|DR179164 RTMNUT1_16_H11.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_16_H11_A029 3', mRNA sequence
Length = 817
Score = 40.1 bits (20), Expect = 0.11
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 200 catcaatggaaatctggagggaggaagtctttggtccagt 239
|||||||| |||| ||||||||||| || ||||| |||||
Sbjct: 443 catcaatgcaaatatggagggaggaggtatttgggccagt 404
>gb|DR179243.1|DR179243 RTMNUT1_16_H11.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_16_H11_A029 5', mRNA sequence
Length = 815
Score = 40.1 bits (20), Expect = 0.11
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 200 catcaatggaaatctggagggaggaagtctttggtccagt 239
|||||||| |||| ||||||||||| || ||||| |||||
Sbjct: 526 catcaatgcaaatatggagggaggaggtatttgggccagt 487
>gb|DR181728.1|DR181728 RTMNUT1_40_D09.g2_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_40_D09_A029 5', mRNA sequence
Length = 700
Score = 40.1 bits (20), Expect = 0.11
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 200 catcaatggaaatctggagggaggaagtctttggtccagt 239
|||||||| |||| ||||||||||| || ||||| |||||
Sbjct: 642 catcaatgcaaatatggagggaggaggtatttgggccagt 603
>gb|DR386118.1|DR386118 RTHG1_13_C02.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_13_C02_A029 3', mRNA sequence
Length = 832
Score = 40.1 bits (20), Expect = 0.11
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 200 catcaatggaaatctggagggaggaagtctttggtccagt 239
|||||||| |||| ||||||||||| || ||||| |||||
Sbjct: 291 catcaatgcaaatatggagggaggaggtatttgggccagt 330
>gb|DR387808.1|DR387808 RTHG1_24_F11.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_24_F11_A029 3', mRNA sequence
Length = 789
Score = 40.1 bits (20), Expect = 0.11
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 200 catcaatggaaatctggagggaggaagtctttggtccagt 239
|||||||| |||| ||||||||||| || ||||| |||||
Sbjct: 247 catcaatgcaaatatggagggaggaggtatttgggccagt 286
>gb|DT625150.1|DT625150 EST1159425 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAM43 5' end, mRNA sequence
Length = 586
Score = 40.1 bits (20), Expect = 0.11
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 200 catcaatggaaatctggagggaggaagtctttggtccagt 239
|||||||| |||| ||||||||||| || ||||| |||||
Sbjct: 43 catcaatgcaaatatggagggaggaggtatttgggccagt 82
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 75,573
Number of Sequences: 355925
Number of extensions: 75573
Number of successful extensions: 17787
Number of sequences better than 0.5: 30
Number of HSP's better than 0.5 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17706
Number of HSP's gapped (non-prelim): 81
length of query: 672
length of database: 217,277,237
effective HSP length: 19
effective length of query: 653
effective length of database: 210,514,662
effective search space: 137466074286
effective search space used: 137466074286
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)