BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3204317.2.1
(607 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW010487.1|AW010487 ST07D06 Pine TriplEx shoot tip libra... 74 7e-012
gb|CF477622.1|CF477622 RTWW3_9_B03.b1_A022 Well-watered lob... 74 7e-012
gb|CO169436.1|CO169436 NDL1_7_C03.b1_A029 Needles control P... 74 7e-012
gb|CX652380.1|CX652380 COLD1_58_E05.g1_A029 Root cold Pinus... 74 7e-012
gb|DR013586.1|DR013586 HEAT1_20_F02.b1_A029 Root at 37 C fo... 74 7e-012
gb|DR019596.1|DR019596 STRS1_31_D05.b1_A034 Shoot tip pitch... 74 7e-012
gb|DR019640.1|DR019640 STRS1_31_H11.b1_A034 Shoot tip pitch... 74 7e-012
gb|DR019670.1|DR019670 STRS1_31_D05.g1_A034 Shoot tip pitch... 74 7e-012
gb|DR024579.1|DR024579 STRS1_66_A03.b1_A034 Shoot tip pitch... 74 7e-012
gb|DR052378.1|DR052378 RTCA1_4_F07.b1_A029 Roots minus calc... 74 7e-012
gb|DR052459.1|DR052459 RTCA1_4_F07.g1_A029 Roots minus calc... 74 7e-012
gb|DR055729.1|DR055729 RTCA1_25_C02.g1_A029 Roots minus cal... 74 7e-012
gb|DR081506.1|DR081506 RTFEPL1_30_D11.b1_A029 Roots plus ad... 74 7e-012
gb|DR093835.1|DR093835 STRR1_10_E06.g1_A033 Stem Response R... 74 7e-012
gb|DR094032.1|DR094032 STRR1_12_B03.b1_A033 Stem Response R... 74 7e-012
gb|DR094103.1|DR094103 STRR1_12_B03.g1_A033 Stem Response R... 74 7e-012
gb|DR164307.1|DR164307 RTFE1_48_D09.b1_A029 Roots minus iro... 74 7e-012
dbj|BD224353.1| Materials and methods for the modification ... 74 7e-012
dbj|BD224416.1| Materials and methods for the modification ... 74 7e-012
gb|CX652294.1|CX652294 COLD1_58_E05.b1_A029 Root cold Pinus... 62 3e-008
gb|BX681734.1|BX681734 BX681734 RS Pinus pinaster cDNA clon... 58 4e-007
gb|DR111231.1|DR111231 RTS1_16_F03.b1_A029 Roots minus sulf... 46 0.002
gb|DR387082.1|DR387082 RTHG1_19_G02.b1_A029 Roots plus adde... 38 0.40
>gb|AW010487.1|AW010487 ST07D06 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST07D06, mRNA sequence
Length = 811
Score = 73.8 bits (37), Expect = 7e-012
Identities = 67/77 (87%)
Strand = Plus / Minus
Query: 497 acgtaggtgacggctttgtacagtccccaaggcacgatgtagagccagtctgagttcgcc 556
||||| |||||||| ||||| || ||||||||||| ||||| ||||| | |||||||||
Sbjct: 356 acgtatgtgacggccttgtatagaccccaaggcacaatgtaaagccaattggagttcgcc 297
Query: 557 cttggtccaatcggcac 573
||||||||||| |||||
Sbjct: 296 cttggtccaataggcac 280
>gb|CF477622.1|CF477622 RTWW3_9_B03.b1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_9_B03_A022 3', mRNA sequence
Length = 667
Score = 73.8 bits (37), Expect = 7e-012
Identities = 67/77 (87%)
Strand = Plus / Minus
Query: 497 acgtaggtgacggctttgtacagtccccaaggcacgatgtagagccagtctgagttcgcc 556
||||| |||||||| ||||| || ||||||||||| ||||| ||||| | |||||||||
Sbjct: 230 acgtatgtgacggccttgtatagaccccaaggcacaatgtaaagccaattggagttcgcc 171
Query: 557 cttggtccaatcggcac 573
||||||||||| |||||
Sbjct: 170 cttggtccaataggcac 154
>gb|CO169436.1|CO169436 NDL1_7_C03.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_7_C03_A029 3', mRNA sequence
Length = 795
Score = 73.8 bits (37), Expect = 7e-012
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 497 acgtaggtgacggctttgtacagtccccaaggcacgatgtagagccagtctgagttcgcc 556
||||| |||||||| ||||| || ||||||||||| ||||| ||||| | |||||||||
Sbjct: 151 acgtatgtgacggccttgtatagaccccaaggcacaatgtaaagccaattggagttcgcc 210
Query: 557 cttggtccaatcggcac 573
||||||||||| |||||
Sbjct: 211 cttggtccaataggcac 227
>gb|CX652380.1|CX652380 COLD1_58_E05.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_58_E05_A029 5', mRNA sequence
Length = 588
Score = 73.8 bits (37), Expect = 7e-012
Identities = 67/77 (87%)
Strand = Plus / Minus
Query: 497 acgtaggtgacggctttgtacagtccccaaggcacgatgtagagccagtctgagttcgcc 556
||||| |||||||| ||||| || ||||||||||| ||||| ||||| | |||||||||
Sbjct: 537 acgtatgtgacggccttgtatagaccccaaggcacaatgtaaagccaattggagttcgcc 478
Query: 557 cttggtccaatcggcac 573
||||||||||| |||||
Sbjct: 477 cttggtccaataggcac 461
>gb|DR013586.1|DR013586 HEAT1_20_F02.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_20_F02_A029 3', mRNA sequence
Length = 740
Score = 73.8 bits (37), Expect = 7e-012
Identities = 67/77 (87%)
Strand = Plus / Minus
Query: 497 acgtaggtgacggctttgtacagtccccaaggcacgatgtagagccagtctgagttcgcc 556
||||| |||||||| ||||| || ||||||||||| ||||| ||||| | |||||||||
Sbjct: 164 acgtatgtgacggccttgtatagaccccaaggcacaatgtaaagccaattggagttcgcc 105
Query: 557 cttggtccaatcggcac 573
||||||||||| |||||
Sbjct: 104 cttggtccaataggcac 88
>gb|DR019596.1|DR019596 STRS1_31_D05.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_31_D05_A034 3', mRNA sequence
Length = 865
Score = 73.8 bits (37), Expect = 7e-012
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 497 acgtaggtgacggctttgtacagtccccaaggcacgatgtagagccagtctgagttcgcc 556
||||| |||||||| ||||| || ||||||||||| ||||| ||||| | |||||||||
Sbjct: 432 acgtatgtgacggccttgtatagaccccaaggcacaatgtaaagccaattggagttcgcc 491
Query: 557 cttggtccaatcggcac 573
||||||||||| |||||
Sbjct: 492 cttggtccaataggcac 508
>gb|DR019640.1|DR019640 STRS1_31_H11.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_31_H11_A034 3', mRNA sequence
Length = 794
Score = 73.8 bits (37), Expect = 7e-012
Identities = 67/77 (87%)
Strand = Plus / Minus
Query: 497 acgtaggtgacggctttgtacagtccccaaggcacgatgtagagccagtctgagttcgcc 556
||||| |||||||| ||||| || ||||||||||| ||||| ||||| | |||||||||
Sbjct: 357 acgtatgtgacggccttgtatagaccccaaggcacaatgtaaagccaattggagttcgcc 298
Query: 557 cttggtccaatcggcac 573
||||||||||| |||||
Sbjct: 297 cttggtccaataggcac 281
>gb|DR019670.1|DR019670 STRS1_31_D05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_31_D05_A034 5', mRNA sequence
Length = 756
Score = 73.8 bits (37), Expect = 7e-012
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 497 acgtaggtgacggctttgtacagtccccaaggcacgatgtagagccagtctgagttcgcc 556
||||| |||||||| ||||| || ||||||||||| ||||| ||||| | |||||||||
Sbjct: 404 acgtatgtgacggccttgtatagaccccaaggcacaatgtaaagccaattggagttcgcc 463
Query: 557 cttggtccaatcggcac 573
||||||||||| |||||
Sbjct: 464 cttggtccaataggcac 480
>gb|DR024579.1|DR024579 STRS1_66_A03.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_66_A03_A034 3', mRNA sequence
Length = 605
Score = 73.8 bits (37), Expect = 7e-012
Identities = 67/77 (87%)
Strand = Plus / Minus
Query: 497 acgtaggtgacggctttgtacagtccccaaggcacgatgtagagccagtctgagttcgcc 556
||||| |||||||| ||||| || ||||||||||| ||||| ||||| | |||||||||
Sbjct: 162 acgtatgtgacggccttgtatagaccccaaggcacaatgtaaagccaattggagttcgcc 103
Query: 557 cttggtccaatcggcac 573
||||||||||| |||||
Sbjct: 102 cttggtccaataggcac 86
>gb|DR052378.1|DR052378 RTCA1_4_F07.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_4_F07_A029 3', mRNA sequence
Length = 865
Score = 73.8 bits (37), Expect = 7e-012
Identities = 67/77 (87%)
Strand = Plus / Minus
Query: 497 acgtaggtgacggctttgtacagtccccaaggcacgatgtagagccagtctgagttcgcc 556
||||| |||||||| ||||| || ||||||||||| ||||| ||||| | |||||||||
Sbjct: 428 acgtatgtgacggccttgtatagaccccaaggcacaatgtaaagccaattggagttcgcc 369
Query: 557 cttggtccaatcggcac 573
||||||||||| |||||
Sbjct: 368 cttggtccaataggcac 352
>gb|DR052459.1|DR052459 RTCA1_4_F07.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_4_F07_A029 5', mRNA sequence
Length = 932
Score = 73.8 bits (37), Expect = 7e-012
Identities = 67/77 (87%)
Strand = Plus / Minus
Query: 497 acgtaggtgacggctttgtacagtccccaaggcacgatgtagagccagtctgagttcgcc 556
||||| |||||||| ||||| || ||||||||||| ||||| ||||| | |||||||||
Sbjct: 569 acgtatgtgacggccttgtatagaccccaaggcacaatgtaaagccaattggagttcgcc 510
Query: 557 cttggtccaatcggcac 573
||||||||||| |||||
Sbjct: 509 cttggtccaataggcac 493
>gb|DR055729.1|DR055729 RTCA1_25_C02.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_25_C02_A029 5', mRNA sequence
Length = 687
Score = 73.8 bits (37), Expect = 7e-012
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 497 acgtaggtgacggctttgtacagtccccaaggcacgatgtagagccagtctgagttcgcc 556
||||| |||||||| ||||| || ||||||||||| ||||| ||||| | |||||||||
Sbjct: 405 acgtatgtgacggccttgtatagaccccaaggcacaatgtaaagccaattggagttcgcc 464
Query: 557 cttggtccaatcggcac 573
||||||||||| |||||
Sbjct: 465 cttggtccaataggcac 481
>gb|DR081506.1|DR081506 RTFEPL1_30_D11.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_30_D11_A029 3', mRNA sequence
Length = 761
Score = 73.8 bits (37), Expect = 7e-012
Identities = 67/77 (87%)
Strand = Plus / Minus
Query: 497 acgtaggtgacggctttgtacagtccccaaggcacgatgtagagccagtctgagttcgcc 556
||||| |||||||| ||||| || ||||||||||| ||||| ||||| | |||||||||
Sbjct: 204 acgtatgtgacggccttgtatagaccccaaggcacaatgtaaagccaattggagttcgcc 145
Query: 557 cttggtccaatcggcac 573
||||||||||| |||||
Sbjct: 144 cttggtccaataggcac 128
>gb|DR093835.1|DR093835 STRR1_10_E06.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_10_E06_A033 5', mRNA sequence
Length = 788
Score = 73.8 bits (37), Expect = 7e-012
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 497 acgtaggtgacggctttgtacagtccccaaggcacgatgtagagccagtctgagttcgcc 556
||||| |||||||| ||||| || ||||||||||| ||||| ||||| | |||||||||
Sbjct: 421 acgtatgtgacggccttgtatagaccccaaggcacaatgtaaagccaattggagttcgcc 480
Query: 557 cttggtccaatcggcac 573
||||||||||| |||||
Sbjct: 481 cttggtccaataggcac 497
>gb|DR094032.1|DR094032 STRR1_12_B03.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_12_B03_A033 3', mRNA sequence
Length = 910
Score = 73.8 bits (37), Expect = 7e-012
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 497 acgtaggtgacggctttgtacagtccccaaggcacgatgtagagccagtctgagttcgcc 556
||||| |||||||| ||||| || ||||||||||| ||||| ||||| | |||||||||
Sbjct: 140 acgtatgtgacggccttgtatagaccccaaggcacaatgtaaagccaattggagttcgcc 199
Query: 557 cttggtccaatcggcac 573
||||||||||| |||||
Sbjct: 200 cttggtccaataggcac 216
>gb|DR094103.1|DR094103 STRR1_12_B03.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_12_B03_A033 5', mRNA sequence
Length = 864
Score = 73.8 bits (37), Expect = 7e-012
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 497 acgtaggtgacggctttgtacagtccccaaggcacgatgtagagccagtctgagttcgcc 556
||||| |||||||| ||||| || ||||||||||| ||||| ||||| | |||||||||
Sbjct: 380 acgtatgtgacggccttgtatagaccccaaggcacaatgtaaagccaattggagttcgcc 439
Query: 557 cttggtccaatcggcac 573
||||||||||| |||||
Sbjct: 440 cttggtccaataggcac 456
>gb|DR164307.1|DR164307 RTFE1_48_D09.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_48_D09_A029 3', mRNA sequence
Length = 868
Score = 73.8 bits (37), Expect = 7e-012
Identities = 67/77 (87%)
Strand = Plus / Minus
Query: 497 acgtaggtgacggctttgtacagtccccaaggcacgatgtagagccagtctgagttcgcc 556
||||| |||||||| ||||| || ||||||||||| ||||| ||||| | |||||||||
Sbjct: 439 acgtatgtgacggccttgtatagaccccaaggcacaatgtaaagccaattggagttcgcc 380
Query: 557 cttggtccaatcggcac 573
||||||||||| |||||
Sbjct: 379 cttggtccaataggcac 363
>dbj|BD224353.1| Materials and methods for the modification of plant lignin content
Length = 451
Score = 73.8 bits (37), Expect = 7e-012
Identities = 67/77 (87%)
Strand = Plus / Minus
Query: 497 acgtaggtgacggctttgtacagtccccaaggcacgatgtagagccagtctgagttcgcc 556
||||| |||||||| ||||| || ||||||||||| ||||| ||||| | |||||||||
Sbjct: 295 acgtatgtgacggccttgtatagaccccaaggcacaatgtaaagccaattggagttcgcc 236
Query: 557 cttggtccaatcggcac 573
||||||||||| |||||
Sbjct: 235 cttggtccaataggcac 219
>dbj|BD224416.1| Materials and methods for the modification of plant lignin content
Length = 437
Score = 73.8 bits (37), Expect = 7e-012
Identities = 67/77 (87%)
Strand = Plus / Minus
Query: 497 acgtaggtgacggctttgtacagtccccaaggcacgatgtagagccagtctgagttcgcc 556
||||| |||||||| ||||| || ||||||||||| ||||| ||||| | |||||||||
Sbjct: 281 acgtatgtgacggccttgtatagaccccaaggcacaatgtaaagccaattggagttcgcc 222
Query: 557 cttggtccaatcggcac 573
||||||||||| |||||
Sbjct: 221 cttggtccaataggcac 205
>gb|CX652294.1|CX652294 COLD1_58_E05.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_58_E05_A029 3', mRNA sequence
Length = 502
Score = 61.9 bits (31), Expect = 3e-008
Identities = 58/67 (86%)
Strand = Plus / Minus
Query: 497 acgtaggtgacggctttgtacagtccccaaggcacgatgtagagccagtctgagttcgcc 556
||||| |||||||| ||||| || ||||||||||| ||||| ||||| | |||||||||
Sbjct: 67 acgtatgtgacggccttgtatagaccccaaggcacaatgtaaagccaattggagttcgcc 8
Query: 557 cttggtc 563
|||||||
Sbjct: 7 cttggtc 1
>gb|BX681734.1|BX681734 BX681734 RS Pinus pinaster cDNA clone RS63F06, mRNA sequence
Length = 620
Score = 58.0 bits (29), Expect = 4e-007
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 521 ccccaaggcacgatgtagagccagtctgagttcgcccttggtccaatcggcac 573
||||||||||| ||||| ||||| | |||||||||||||||||||| |||||
Sbjct: 585 ccccaaggcacaatgtaaagccaattggagttcgcccttggtccaataggcac 533
>gb|DR111231.1|DR111231 RTS1_16_F03.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_16_F03_A029 3', mRNA sequence
Length = 628
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 497 acgtaggtgacggctttgtacagtccccaaggcacgatgtagagcca 543
||||| |||||||| ||||| || ||||||||||| ||||| |||||
Sbjct: 52 acgtatgtgacggccttgtatagaccccaaggcacaatgtaaagcca 6
>gb|DR387082.1|DR387082 RTHG1_19_G02.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_19_G02_A029 3', mRNA sequence
Length = 833
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 73 acgccgtgatatatatgat 91
|||||||||||||||||||
Sbjct: 784 acgccgtgatatatatgat 766
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 50,731
Number of Sequences: 355925
Number of extensions: 50731
Number of successful extensions: 12024
Number of sequences better than 0.5: 23
Number of HSP's better than 0.5 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11968
Number of HSP's gapped (non-prelim): 55
length of query: 607
length of database: 217,277,237
effective HSP length: 19
effective length of query: 588
effective length of database: 210,514,662
effective search space: 123782621256
effective search space used: 123782621256
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)