BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3203826.2.1
(594 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF664980.1|CF664980 RTCNT1_13_D02.b1_A029 Root control P... 38 0.39
gb|DR013221.1|DR013221 HEAT1_18_A03.b1_A029 Root at 37 C fo... 38 0.39
gb|DR014607.1|DR014607 HEAT1_50_B11.g1_A029 Root at 37 C fo... 38 0.39
gb|DR023829.1|DR023829 STRS1_60_G07.b1_A034 Shoot tip pitch... 38 0.39
gb|DR054984.1|DR054984 RTCA1_20_G02.g1_A029 Roots minus cal... 38 0.39
gb|DR688199.1|DR688199 EST1078283 Normalized pine embryo li... 38 0.39
gb|DR693172.1|DR693172 EST1083260 Normalized pine embryo li... 38 0.39
gb|DT638097.1|DT638097 EST1153028 Normalized pine embryo li... 38 0.39
>gb|CF664980.1|CF664980 RTCNT1_13_D02.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_13_D02_A029 3', mRNA sequence
Length = 660
Score = 38.2 bits (19), Expect = 0.39
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 267 cacaaacatcagaaggtga 285
|||||||||||||||||||
Sbjct: 389 cacaaacatcagaaggtga 371
>gb|DR013221.1|DR013221 HEAT1_18_A03.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_18_A03_A029 3', mRNA sequence
Length = 721
Score = 38.2 bits (19), Expect = 0.39
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 270 aaacatcagaaggtgatacacca 292
||||||||||||||| |||||||
Sbjct: 43 aaacatcagaaggtggtacacca 21
>gb|DR014607.1|DR014607 HEAT1_50_B11.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_50_B11_A029 5', mRNA sequence
Length = 897
Score = 38.2 bits (19), Expect = 0.39
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 270 aaacatcagaaggtgatacacca 292
||||||||||||||| |||||||
Sbjct: 48 aaacatcagaaggtggtacacca 26
>gb|DR023829.1|DR023829 STRS1_60_G07.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_60_G07_A034 3', mRNA sequence
Length = 810
Score = 38.2 bits (19), Expect = 0.39
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 270 aaacatcagaaggtgatacacca 292
||||||||||||||| |||||||
Sbjct: 3 aaacatcagaaggtggtacacca 25
>gb|DR054984.1|DR054984 RTCA1_20_G02.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_20_G02_A029 5', mRNA sequence
Length = 740
Score = 38.2 bits (19), Expect = 0.39
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 270 aaacatcagaaggtgatacacca 292
||||||||||||||| |||||||
Sbjct: 572 aaacatcagaaggtggtacacca 550
>gb|DR688199.1|DR688199 EST1078283 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAC267 3' end, mRNA sequence
Length = 833
Score = 38.2 bits (19), Expect = 0.39
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 270 aaacatcagaaggtgatacacca 292
||||||||||||||| |||||||
Sbjct: 769 aaacatcagaaggtggtacacca 747
>gb|DR693172.1|DR693172 EST1083260 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADV69 3' end, mRNA sequence
Length = 633
Score = 38.2 bits (19), Expect = 0.39
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 270 aaacatcagaaggtgatacacca 292
||||||||||||||| |||||||
Sbjct: 599 aaacatcagaaggtggtacacca 577
>gb|DT638097.1|DT638097 EST1153028 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHB10 3' end, mRNA sequence
Length = 866
Score = 38.2 bits (19), Expect = 0.39
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 270 aaacatcagaaggtgatacacca 292
||||||||||||||| |||||||
Sbjct: 779 aaacatcagaaggtggtacacca 757
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 65,459
Number of Sequences: 355925
Number of extensions: 65459
Number of successful extensions: 18522
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18514
Number of HSP's gapped (non-prelim): 8
length of query: 594
length of database: 217,277,237
effective HSP length: 19
effective length of query: 575
effective length of database: 210,514,662
effective search space: 121045930650
effective search space used: 121045930650
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)