BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3198833.2.1
(593 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF479200.1|CF479200 RTWW3_24_E03.g1_A022 Well-watered lo... 44 0.006
gb|DR168448.1|DR168448 RTPHOS1_25_B11.g1_A029 Roots minus p... 44 0.006
gb|DR013467.1|DR013467 HEAT1_19_B05.g1_A029 Root at 37 C fo... 42 0.025
gb|DR070485.1|DR070485 RTDK1_13_D04.g1_A029 Roots, dark Pin... 42 0.025
dbj|BD236381.1| Materials and method for modification of pl... 42 0.025
>gb|CF479200.1|CF479200 RTWW3_24_E03.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_24_E03_A022 5', mRNA sequence
Length = 753
Score = 44.1 bits (22), Expect = 0.006
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 154 atctccggcaccattgacttcatcttcggcaactcggc 191
|||| ||||||||| || ||||||||||||||| ||||
Sbjct: 28 atctacggcaccatagatttcatcttcggcaacgcggc 65
>gb|DR168448.1|DR168448 RTPHOS1_25_B11.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_25_B11_A029 5', mRNA sequence
Length = 629
Score = 44.1 bits (22), Expect = 0.006
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 154 atctccggcaccattgacttcatcttcggcaactcggc 191
|||| ||||||||| || ||||||||||||||| ||||
Sbjct: 230 atctacggcaccatagatttcatcttcggcaacgcggc 267
>gb|DR013467.1|DR013467 HEAT1_19_B05.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_19_B05_A029 5', mRNA sequence
Length = 741
Score = 42.1 bits (21), Expect = 0.025
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 159 cggcaccattgacttcatcttcggcaactcggc 191
||||||||| || ||||||||||||||| ||||
Sbjct: 215 cggcaccatagatttcatcttcggcaacgcggc 247
>gb|DR070485.1|DR070485 RTDK1_13_D04.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_13_D04_A029 5', mRNA sequence
Length = 854
Score = 42.1 bits (21), Expect = 0.025
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 159 cggcaccattgacttcatcttcggcaactcggc 191
||||||||| || ||||||||||||||| ||||
Sbjct: 124 cggcaccatagatttcatcttcggcaacgcggc 156
>dbj|BD236381.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 440
Score = 42.1 bits (21), Expect = 0.025
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 160 ggcaccattgacttcatcttcggcaactc 188
|||||||| || |||||||||||||||||
Sbjct: 371 ggcaccatagatttcatcttcggcaactc 399
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 47,314
Number of Sequences: 355925
Number of extensions: 47314
Number of successful extensions: 10192
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10179
Number of HSP's gapped (non-prelim): 13
length of query: 593
length of database: 217,277,237
effective HSP length: 19
effective length of query: 574
effective length of database: 210,514,662
effective search space: 120835415988
effective search space used: 120835415988
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)