BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3184927.2.1
         (1157 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CF474741.1|CF474741  RTWW2_7_F01.g1_A021 Well-watered lob...    40   0.20 
gb|BX682046.1|BX682046  BX682046 RS Pinus pinaster cDNA clon...    40   0.20 
gb|CO200290.1|CO200290  GEO2_6_C05.g1_A032 Root gravitropism...    40   0.20 
gb|DR088806.1|DR088806  RTAL1_4_E05.g1_A029 Roots plus added...    40   0.20 

>gb|CF474741.1|CF474741 RTWW2_7_F01.g1_A021 Well-watered loblolly pine roots WW2 Pinus
           taeda cDNA clone RTWW2_7_F01_A021 5', mRNA sequence
          Length = 708

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 803 tcttgcacgatctcagcacgttcagagt 830
           ||||||||||| |||| |||||||||||
Sbjct: 191 tcttgcacgatttcagaacgttcagagt 164



>gb|BX682046.1|BX682046 BX682046 RS Pinus pinaster cDNA clone RS69B03, mRNA sequence
          Length = 190

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 803 tcttgcacgatctcagcacgttcagagt 830
           ||||||||||| |||| |||||||||||
Sbjct: 61  tcttgcacgatttcagaacgttcagagt 34



>gb|CO200290.1|CO200290 GEO2_6_C05.g1_A032 Root gravitropism October 2003 test Pinus taeda
           cDNA clone GEO2_6_C05_A032 5', mRNA sequence
          Length = 849

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 803 tcttgcacgatctcagcacgttcagagt 830
           ||||||||||| |||| |||||||||||
Sbjct: 390 tcttgcacgatttcagaacgttcagagt 363



>gb|DR088806.1|DR088806 RTAL1_4_E05.g1_A029 Roots plus added aluminum Pinus taeda cDNA
           clone RTAL1_4_E05_A029 5', mRNA sequence
          Length = 719

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 803 tcttgcacgatctcagcacgttcagagt 830
           ||||||||||| |||| |||||||||||
Sbjct: 424 tcttgcacgatttcagaacgttcagagt 397



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 92,239
Number of Sequences: 355925
Number of extensions: 92239
Number of successful extensions: 25437
Number of sequences better than  0.5: 4
Number of HSP's better than  0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25427
Number of HSP's gapped (non-prelim): 10
length of query: 1157
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1138
effective length of database: 210,514,662
effective search space: 239565685356
effective search space used: 239565685356
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)