BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3148257.2.1
(675 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO163966.1|CO163966 FLD1_45_A08.b1_A029 Root flooded Pin... 44 0.007
gb|CO167472.1|CO167472 FLD1_69_D10.b1_A029 Root flooded Pin... 44 0.007
gb|CV032910.1|CV032910 RTNACL1_19_C02.b1_A029 Roots plus ad... 44 0.007
gb|CX647297.1|CX647297 COLD1_15_D02.b1_A029 Root cold Pinus... 44 0.007
gb|CX647312.1|CX647312 COLD1_15_E09.b1_A029 Root cold Pinus... 44 0.007
gb|CX648663.1|CX648663 COLD1_30_D01.b1_A029 Root cold Pinus... 44 0.007
gb|CX652147.1|CX652147 COLD1_57_E12.b1_A029 Root cold Pinus... 44 0.007
gb|DR071785.1|DR071785 RTDK1_22_C07.b1_A029 Roots, dark Pin... 44 0.007
gb|CF672659.1|CF672659 RTCNT1_73_D08.b1_A029 Root control P... 42 0.029
gb|CO163120.1|CO163120 FLD1_39_C07.g1_A029 Root flooded Pin... 42 0.029
gb|CO164354.1|CO164354 FLD1_47_B03.g1_A029 Root flooded Pin... 42 0.029
gb|CO167254.1|CO167254 FLD1_67_G09.g1_A029 Root flooded Pin... 42 0.029
gb|CV036346.1|CV036346 RTNACL1_58_C12.g1_A029 Roots plus ad... 42 0.029
gb|DR011079.1|DR011079 HEAT1_3_F10.b1_A029 Root at 37 C for... 42 0.029
gb|DR385475.1|DR385475 RTHG1_8_H03.g1_A029 Roots plus added... 42 0.029
gb|DR743561.1|DR743561 RTCU1_16_E10.g1_A029 Roots plus adde... 42 0.029
gb|CO160691.1|CO160691 FLD1_23_G09.b1_A029 Root flooded Pin... 40 0.11
gb|CO167042.1|CO167042 FLD1_66_H11.b1_A029 Root flooded Pin... 40 0.11
gb|CO167112.1|CO167112 FLD1_66_H11.g1_A029 Root flooded Pin... 40 0.11
gb|CX648994.1|CX648994 COLD1_32_F06.b1_A029 Root cold Pinus... 40 0.11
gb|CX653068.1|CX653068 COLD1_63_E09.b1_A029 Root cold Pinus... 40 0.11
gb|DR048162.1|DR048162 RTBOR1_7_B01.b2_A029 Roots plus adde... 40 0.11
gb|DR167782.1|DR167782 RTPHOS1_21_B06.b1_A029 Roots minus p... 40 0.11
gb|DR743042.1|DR743042 RTCU1_13_E05.b1_A029 Roots plus adde... 40 0.11
gb|BQ699990.1|BQ699990 NXRV132_F09_F NXRV (Nsf Xylem Root w... 38 0.45
gb|CO159352.1|CO159352 FLD1_13_C07.b1_A029 Root flooded Pin... 38 0.45
gb|CO164798.1|CO164798 FLD1_50_H09.b1_A029 Root flooded Pin... 38 0.45
gb|CX646168.1|CX646168 COLD1_7_E11.g1_A029 Root cold Pinus ... 38 0.45
gb|CX647304.1|CX647304 COLD1_15_D12.b1_A029 Root cold Pinus... 38 0.45
gb|CX649581.1|CX649581 COLD1_36_E01.b1_A029 Root cold Pinus... 38 0.45
gb|DR011795.1|DR011795 HEAT1_8_A08.b1_A029 Root at 37 C for... 38 0.45
gb|DR025637.1|DR025637 STRS1_72_G09.g1_A034 Shoot tip pitch... 38 0.45
gb|DR048963.1|DR048963 RTBOR1_12_H05.b1_A029 Roots plus add... 38 0.45
gb|DR049686.1|DR049686 RTBOR1_18_H10.b1_A029 Roots plus add... 38 0.45
gb|DR050726.1|DR050726 RTBOR1_25_G05.b1_A029 Roots plus add... 38 0.45
gb|DR055573.1|DR055573 RTCA1_24_C05.g2_A029 Roots minus cal... 38 0.45
gb|DR078362.1|DR078362 RTFEPL1_3_D11.g1_A029 Roots plus add... 38 0.45
gb|DR387956.1|DR387956 RTHG1_25_G01.b1_A029 Roots plus adde... 38 0.45
>gb|CO163966.1|CO163966 FLD1_45_A08.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_45_A08_A029 3', mRNA sequence
Length = 892
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcgaga 22
||||||||||||||||||||||
Sbjct: 870 gaattcggcacgaggctcgaga 891
>gb|CO167472.1|CO167472 FLD1_69_D10.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_69_D10_A029 3', mRNA sequence
Length = 828
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcgaga 22
||||||||||||||||||||||
Sbjct: 807 gaattcggcacgaggctcgaga 828
>gb|CV032910.1|CV032910 RTNACL1_19_C02.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_19_C02_A029 3', mRNA sequence
Length = 858
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcgaga 22
||||||||||||||||||||||
Sbjct: 836 gaattcggcacgaggctcgaga 857
>gb|CX647297.1|CX647297 COLD1_15_D02.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_15_D02_A029 3', mRNA sequence
Length = 447
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcgaga 22
||||||||||||||||||||||
Sbjct: 424 gaattcggcacgaggctcgaga 445
>gb|CX647312.1|CX647312 COLD1_15_E09.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_15_E09_A029 3', mRNA sequence
Length = 637
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcgaga 22
||||||||||||||||||||||
Sbjct: 615 gaattcggcacgaggctcgaga 636
>gb|CX648663.1|CX648663 COLD1_30_D01.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_30_D01_A029 3', mRNA sequence
Length = 793
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcgaga 22
||||||||||||||||||||||
Sbjct: 771 gaattcggcacgaggctcgaga 792
>gb|CX652147.1|CX652147 COLD1_57_E12.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_57_E12_A029 3', mRNA sequence
Length = 661
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcgaga 22
||||||||||||||||||||||
Sbjct: 637 gaattcggcacgaggctcgaga 658
>gb|DR071785.1|DR071785 RTDK1_22_C07.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_22_C07_A029 3', mRNA sequence
Length = 641
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcgaga 22
||||||||||||||||||||||
Sbjct: 619 gaattcggcacgaggctcgaga 640
>gb|CF672659.1|CF672659 RTCNT1_73_D08.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_73_D08_A029 3', mRNA sequence
Length = 330
Score = 42.1 bits (21), Expect = 0.029
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gaattcggcacgaggctcgag 21
|||||||||||||||||||||
Sbjct: 330 gaattcggcacgaggctcgag 310
>gb|CO163120.1|CO163120 FLD1_39_C07.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_39_C07_A029 5', mRNA sequence
Length = 480
Score = 42.1 bits (21), Expect = 0.029
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcgag 21
|||||||||||||||||||||
Sbjct: 314 gaattcggcacgaggctcgag 334
>gb|CO164354.1|CO164354 FLD1_47_B03.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_47_B03_A029 5', mRNA sequence
Length = 502
Score = 42.1 bits (21), Expect = 0.029
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gaattcggcacgaggctcgag 21
|||||||||||||||||||||
Sbjct: 468 gaattcggcacgaggctcgag 448
>gb|CO167254.1|CO167254 FLD1_67_G09.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_67_G09_A029 5', mRNA sequence
Length = 712
Score = 42.1 bits (21), Expect = 0.029
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcgag 21
|||||||||||||||||||||
Sbjct: 691 gaattcggcacgaggctcgag 711
>gb|CV036346.1|CV036346 RTNACL1_58_C12.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_58_C12_A029 5', mRNA sequence
Length = 454
Score = 42.1 bits (21), Expect = 0.029
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gaattcggcacgaggctcgag 21
|||||||||||||||||||||
Sbjct: 421 gaattcggcacgaggctcgag 401
>gb|DR011079.1|DR011079 HEAT1_3_F10.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_3_F10_A029 3', mRNA sequence
Length = 685
Score = 42.1 bits (21), Expect = 0.029
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gaattcggcacgaggctcgag 21
|||||||||||||||||||||
Sbjct: 668 gaattcggcacgaggctcgag 648
>gb|DR385475.1|DR385475 RTHG1_8_H03.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_8_H03_A029 5', mRNA sequence
Length = 686
Score = 42.1 bits (21), Expect = 0.029
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gaattcggcacgaggctcgag 21
|||||||||||||||||||||
Sbjct: 653 gaattcggcacgaggctcgag 633
>gb|DR743561.1|DR743561 RTCU1_16_E10.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_16_E10_A029 5', mRNA sequence
Length = 664
Score = 42.1 bits (21), Expect = 0.029
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gaattcggcacgaggctcgag 21
|||||||||||||||||||||
Sbjct: 571 gaattcggcacgaggctcgag 551
>gb|CO160691.1|CO160691 FLD1_23_G09.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_23_G09_A029 3', mRNA sequence
Length = 166
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gaattcggcacgaggctcga 20
||||||||||||||||||||
Sbjct: 133 gaattcggcacgaggctcga 114
>gb|CO167042.1|CO167042 FLD1_66_H11.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_66_H11_A029 3', mRNA sequence
Length = 775
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gaattcggcacgaggctcga 20
||||||||||||||||||||
Sbjct: 21 gaattcggcacgaggctcga 2
>gb|CO167112.1|CO167112 FLD1_66_H11.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_66_H11_A029 5', mRNA sequence
Length = 797
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gaattcggcacgaggctcga 20
||||||||||||||||||||
Sbjct: 645 gaattcggcacgaggctcga 626
>gb|CX648994.1|CX648994 COLD1_32_F06.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_32_F06_A029 3', mRNA sequence
Length = 527
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gaattcggcacgaggctcga 20
||||||||||||||||||||
Sbjct: 492 gaattcggcacgaggctcga 473
>gb|CX653068.1|CX653068 COLD1_63_E09.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_63_E09_A029 3', mRNA sequence
Length = 850
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gaattcggcacgaggctcga 20
||||||||||||||||||||
Sbjct: 838 gaattcggcacgaggctcga 819
>gb|DR048162.1|DR048162 RTBOR1_7_B01.b2_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_7_B01_A029 3', mRNA sequence
Length = 730
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gaattcggcacgaggctcga 20
||||||||||||||||||||
Sbjct: 713 gaattcggcacgaggctcga 694
>gb|DR167782.1|DR167782 RTPHOS1_21_B06.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_21_B06_A029 3', mRNA sequence
Length = 544
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gaattcggcacgaggctcga 20
||||||||||||||||||||
Sbjct: 533 gaattcggcacgaggctcga 514
>gb|DR743042.1|DR743042 RTCU1_13_E05.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_13_E05_A029 3', mRNA sequence
Length = 442
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gaattcggcacgaggctcga 20
||||||||||||||||||||
Sbjct: 442 gaattcggcacgaggctcga 423
>gb|BQ699990.1|BQ699990 NXRV132_F09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda
cDNA clone NXRV132_F09 5', mRNA sequence
Length = 539
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gaattcggcacgaggctcg 19
|||||||||||||||||||
Sbjct: 24 gaattcggcacgaggctcg 6
>gb|CO159352.1|CO159352 FLD1_13_C07.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_13_C07_A029 3', mRNA sequence
Length = 351
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcg 19
|||||||||||||||||||
Sbjct: 84 gaattcggcacgaggctcg 102
>gb|CO164798.1|CO164798 FLD1_50_H09.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_50_H09_A029 3', mRNA sequence
Length = 825
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gaattcggcacgaggctcg 19
|||||||||||||||||||
Sbjct: 813 gaattcggcacgaggctcg 795
>gb|CX646168.1|CX646168 COLD1_7_E11.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_7_E11_A029 5', mRNA sequence
Length = 789
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcg 19
|||||||||||||||||||
Sbjct: 533 gaattcggcacgaggctcg 551
>gb|CX647304.1|CX647304 COLD1_15_D12.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_15_D12_A029 3', mRNA sequence
Length = 770
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gaattcggcacgaggctcg 19
|||||||||||||||||||
Sbjct: 723 gaattcggcacgaggctcg 705
>gb|CX649581.1|CX649581 COLD1_36_E01.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_36_E01_A029 3', mRNA sequence
Length = 756
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gaattcggcacgaggctcg 19
|||||||||||||||||||
Sbjct: 744 gaattcggcacgaggctcg 726
>gb|DR011795.1|DR011795 HEAT1_8_A08.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_8_A08_A029 3', mRNA sequence
Length = 637
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gaattcggcacgaggctcg 19
|||||||||||||||||||
Sbjct: 628 gaattcggcacgaggctcg 610
>gb|DR025637.1|DR025637 STRS1_72_G09.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_72_G09_A034 5', mRNA sequence
Length = 564
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcg 19
|||||||||||||||||||
Sbjct: 425 gaattcggcacgaggctcg 443
>gb|DR048963.1|DR048963 RTBOR1_12_H05.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_12_H05_A029 3', mRNA sequence
Length = 828
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gaattcggcacgaggctcg 19
|||||||||||||||||||
Sbjct: 827 gaattcggcacgaggctcg 809
>gb|DR049686.1|DR049686 RTBOR1_18_H10.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_18_H10_A029 3', mRNA sequence
Length = 663
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gaattcggcacgaggctcg 19
|||||||||||||||||||
Sbjct: 638 gaattcggcacgaggctcg 620
>gb|DR050726.1|DR050726 RTBOR1_25_G05.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_25_G05_A029 3', mRNA sequence
Length = 859
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gaattcggcacgaggctcg 19
|||||||||||||||||||
Sbjct: 848 gaattcggcacgaggctcg 830
>gb|DR055573.1|DR055573 RTCA1_24_C05.g2_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_24_C05_A029 5', mRNA sequence
Length = 504
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gaattcggcacgaggctcg 19
|||||||||||||||||||
Sbjct: 301 gaattcggcacgaggctcg 283
>gb|DR078362.1|DR078362 RTFEPL1_3_D11.g1_A029 Roots plus added iron Pinus taeda cDNA
clone RTFEPL1_3_D11_A029 5', mRNA sequence
Length = 849
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gaattcggcacgaggctcg 19
|||||||||||||||||||
Sbjct: 97 gaattcggcacgaggctcg 79
>gb|DR387956.1|DR387956 RTHG1_25_G01.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_25_G01_A029 3', mRNA sequence
Length = 594
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcg 19
|||||||||||||||||||
Sbjct: 217 gaattcggcacgaggctcg 235
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 79,857
Number of Sequences: 355925
Number of extensions: 79857
Number of successful extensions: 28052
Number of sequences better than 0.5: 38
Number of HSP's better than 0.5 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27954
Number of HSP's gapped (non-prelim): 98
length of query: 675
length of database: 217,277,237
effective HSP length: 19
effective length of query: 656
effective length of database: 210,514,662
effective search space: 138097618272
effective search space used: 138097618272
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)