BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3115190.2.2
         (1172 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CF478684.1|CF478684  RTWW3_16_H09.g1_A022 Well-watered lo...    42   0.051
gb|CF670903.1|CF670903  RTCNT1_53_H01.b1_A029 Root control P...    42   0.051
gb|CF670977.1|CF670977  RTCNT1_53_H01.g1_A029 Root control P...    42   0.051
gb|DR180886.1|DR180886  RTMNUT1_35_A12.g1_A029 Roots minus m...    42   0.051

>gb|CF478684.1|CF478684 RTWW3_16_H09.g1_A022 Well-watered loblolly pine roots WW3 Pinus
           taeda cDNA clone RTWW3_16_H09_A022 5', mRNA sequence
          Length = 770

 Score = 42.1 bits (21), Expect = 0.051
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 490 ggcttcttccacgttgtcaacaacgactacacgcactggctcatgtacgccat 542
           |||| |||||| || || |||||||| ||||||||||||   |||||||||||
Sbjct: 453 ggctacttccatgtggtgaacaacgattacacgcactgggaaatgtacgccat 401



>gb|CF670903.1|CF670903 RTCNT1_53_H01.b1_A029 Root control Pinus taeda cDNA clone
           RTCNT1_53_H01_A029 3', mRNA sequence
          Length = 763

 Score = 42.1 bits (21), Expect = 0.051
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                
Query: 490 ggcttcttccacgttgtcaacaacgactacacgcactggctcatgtacgccat 542
           |||| |||||| || || |||||||| ||||||||||||   |||||||||||
Sbjct: 100 ggctacttccatgtggtgaacaacgattacacgcactgggaaatgtacgccat 152



>gb|CF670977.1|CF670977 RTCNT1_53_H01.g1_A029 Root control Pinus taeda cDNA clone
           RTCNT1_53_H01_A029 5', mRNA sequence
          Length = 640

 Score = 42.1 bits (21), Expect = 0.051
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                
Query: 490 ggcttcttccacgttgtcaacaacgactacacgcactggctcatgtacgccat 542
           |||| |||||| || || |||||||| ||||||||||||   |||||||||||
Sbjct: 230 ggctacttccatgtggtgaacaacgattacacgcactgggaaatgtacgccat 282



>gb|DR180886.1|DR180886 RTMNUT1_35_A12.g1_A029 Roots minus micronutrients Pinus taeda cDNA
           clone RTMNUT1_35_A12_A029 5', mRNA sequence
          Length = 767

 Score = 42.1 bits (21), Expect = 0.051
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                    
Query: 15  catgatcatccagctctcgcaggagctgctcatgagcagcgacaagaccatcgacgg 71
           |||| |||||||||||  | |||||||| |||||| |||  ||||||| ||||||||
Sbjct: 654 catggtcatccagctcaaggaggagctgatcatgaacagttacaagacaatcgacgg 710



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 111,568
Number of Sequences: 355925
Number of extensions: 111568
Number of successful extensions: 34437
Number of sequences better than  0.5: 4
Number of HSP's better than  0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34433
Number of HSP's gapped (non-prelim): 4
length of query: 1172
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1153
effective length of database: 210,514,662
effective search space: 242723405286
effective search space used: 242723405286
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)